RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 LARP1Q6PKG0 1096 aaKnown RBP16.55■□□□□ 0.24
SHROOM3-202ENST00000466541 AXIN2Q9Y2T1 843 aa16.55■□□□□ 0.24
SHROOM3-202ENST00000466541 USP54Q70EL1 1684 aa16.55■□□□□ 0.24
SHROOM3-202ENST00000466541 WASHC2AQ641Q2 1341 aa16.54■□□□□ 0.24
SHROOM3-202ENST00000466541 CSB-PGBD3P0DP91 1061 aa16.54■□□□□ 0.24
SHROOM3-202ENST00000466541 TNNT2P45379 298 aaPredicted RBP16.54■□□□□ 0.24
SHROOM3-202ENST00000466541 FAM98CQ17RN3 349 aaKnown RBP16.54■□□□□ 0.24
SHROOM3-202ENST00000466541 GLI3P10071 1580 aa16.54■□□□□ 0.24
SHROOM3-202ENST00000466541 RGS12O14924 1447 aa16.53■□□□□ 0.24
SHROOM3-202ENST00000466541 AATKQ6ZMQ8 1374 aa16.53■□□□□ 0.24
SHROOM3-202ENST00000466541 LMO7Q8WWI1 1683 aa16.53■□□□□ 0.24
SHROOM3-202ENST00000466541 RRS1Q15050 365 aaKnown RBP16.53■□□□□ 0.24
SHROOM3-202ENST00000466541 KNSTRNQ9Y448 316 aa16.53■□□□□ 0.24
SHROOM3-202ENST00000466541 COL18A1P39060 1754 aa16.52■□□□□ 0.24
SHROOM3-202ENST00000466541 AMPHP49418 695 aa16.52■□□□□ 0.24
SHROOM3-202ENST00000466541 LTV1Q96GA3 475 aaPredicted RBP16.52■□□□□ 0.24
SHROOM3-202ENST00000466541 SPATA31A5Q5VU36 1347 aa16.51■□□□□ 0.23
SHROOM3-202ENST00000466541 SPATA31A7Q8IWB4 1347 aa16.51■□□□□ 0.23
SHROOM3-202ENST00000466541 COL5A2P05997 1499 aaPredicted RBP16.51■□□□□ 0.23
SHROOM3-202ENST00000466541 TOM1L2Q6ZVM7 507 aa16.51■□□□□ 0.23
SHROOM3-202ENST00000466541 PPM1GO15355 546 aaPredicted RBP16.5■□□□□ 0.23
SHROOM3-202ENST00000466541 SEPT12Q8IYM1 358 aa16.5■□□□□ 0.23
SHROOM3-202ENST00000466541 MAP3K19Q56UN5 1328 aa16.49■□□□□ 0.23
SHROOM3-202ENST00000466541 SPATA31A1Q5TZJ5 1347 aa16.49■□□□□ 0.23
SHROOM3-202ENST00000466541 CDK12Q9NYV4 1490 aaPredicted RBP16.48■□□□□ 0.23
SHROOM3-202ENST00000466541 BRWD3Q6RI45 1802 aa16.48■□□□□ 0.23
SHROOM3-202ENST00000466541 MORC1Q86VD1 984 aa16.47■□□□□ 0.23
SHROOM3-202ENST00000466541 ANKRD24Q8TF21 1146 aa16.47■□□□□ 0.23
SHROOM3-202ENST00000466541 NLRP2Q9NX02 1062 aa16.47■□□□□ 0.23
SHROOM3-202ENST00000466541 MAP2P11137 1827 aaKnown RBP16.47■□□□□ 0.23
SHROOM3-202ENST00000466541 WDR17Q8IZU2 1322 aa16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 ANKRD26Q9UPS8 1709 aa16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 HOXC9P31274 260 aa16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 CC2D1BQ5T0F9 858 aaKnown RBP16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 TCP11L2Q8N4U5 519 aa16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 IP6K1Q92551 441 aa16.46■□□□□ 0.23
SHROOM3-202ENST00000466541 CRB1P82279 1406 aa16.45■□□□□ 0.22
SHROOM3-202ENST00000466541 EMILIN1Q9Y6C2 1016 aa16.45■□□□□ 0.22
SHROOM3-202ENST00000466541 FAM182BQ5T319 152 aa16.43■□□□□ 0.22
SHROOM3-202ENST00000466541 ERBB3P21860 1342 aa16.43■□□□□ 0.22
SHROOM3-202ENST00000466541 ABCC6O95255 1503 aa16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 ONECUT3O60422 494 aaPredicted RBP16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 HSP90AB2PQ58FF8 381 aa16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 AMER1Q5JTC6 1135 aaPredicted RBP16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 KRT27Q7Z3Y8 459 aa16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 PEAK1Q9H792 1746 aa16.42■□□□□ 0.22
SHROOM3-202ENST00000466541 RGPD2P0DJD1 1756 aa16.41■□□□□ 0.22
SHROOM3-202ENST00000466541 PER1O15534 1290 aaPredicted RBP16.41■□□□□ 0.22
SHROOM3-202ENST00000466541 CARD10Q9BWT7 1032 aa16.41■□□□□ 0.22
SHROOM3-202ENST00000466541 NSD2O96028 1365 aa16.4■□□□□ 0.22
SHROOM3-202ENST00000466541 BLMP54132 1417 aaPredicted RBP16.4■□□□□ 0.22
SHROOM3-202ENST00000466541 BARGINQ6ZT62 677 aa16.4■□□□□ 0.22
SHROOM3-202ENST00000466541 POLKQ9UBT6 870 aa16.4■□□□□ 0.22
SHROOM3-202ENST00000466541 THRAP3Q9Y2W1 955 aaKnown RBP16.4■□□□□ 0.22
SHROOM3-202ENST00000466541 FLT4P35916 1363 aa16.39■□□□□ 0.21
SHROOM3-202ENST00000466541 PDE3BQ13370 1112 aa16.39■□□□□ 0.21
SHROOM3-202ENST00000466541 THSD7AQ9UPZ6 1657 aa16.39■□□□□ 0.21
SHROOM3-202ENST00000466541 RTL1A6NKG5 1358 aa16.38■□□□□ 0.21
SHROOM3-202ENST00000466541 DDX10Q13206 875 aaKnown RBP16.38■□□□□ 0.21
SHROOM3-202ENST00000466541 USHBP1Q8N6Y0 703 aa16.38■□□□□ 0.21
SHROOM3-202ENST00000466541 SMG6Q86US8 1419 aaKnown RBP16.37■□□□□ 0.21
SHROOM3-202ENST00000466541 UPF1Q92900 1129 aaKnown RBP eCLIP16.37■□□□□ 0.21
SHROOM3-202ENST00000466541 EP400Q96L91 3159 aa16.37■□□□□ 0.21
SHROOM3-202ENST00000466541 WNK3Q9BYP7 1800 aa16.36■□□□□ 0.21
SHROOM3-202ENST00000466541 DDB1Q16531 1140 aa16.36■□□□□ 0.21
SHROOM3-202ENST00000466541 FAM208AQ9UK61 1670 aaKnown RBP16.35■□□□□ 0.21
SHROOM3-202ENST00000466541 NBPF6Q5VWK0 638 aa16.35■□□□□ 0.21
SHROOM3-202ENST00000466541 NBPF4Q96M43 638 aa16.35■□□□□ 0.21
SHROOM3-202ENST00000466541 INSRP06213 1382 aa16.35■□□□□ 0.21
SHROOM3-202ENST00000466541 PARP4Q9UKK3 1724 aaKnown RBP16.33■□□□□ 0.21
SHROOM3-202ENST00000466541 EXOC5O00471 708 aa16.33■□□□□ 0.2
SHROOM3-202ENST00000466541 IL2RBP14784 551 aa16.33■□□□□ 0.2
SHROOM3-202ENST00000466541 CDCA7Q9BWT1 371 aaPredicted RBP16.33■□□□□ 0.2
SHROOM3-202ENST00000466541 KIF24Q5T7B8 1368 aa16.33■□□□□ 0.2
SHROOM3-202ENST00000466541 LRRC37A3O60309 1634 aa16.32■□□□□ 0.2
SHROOM3-202ENST00000466541 MTHFSP49914 203 aa16.32■□□□□ 0.2
SHROOM3-202ENST00000466541 EIF4A2Q14240 407 aaKnown RBP16.31■□□□□ 0.2
SHROOM3-202ENST00000466541 KAT6BQ8WYB5 2073 aa16.31■□□□□ 0.2
SHROOM3-202ENST00000466541 DISP2A7MBM2 1401 aa16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 TRIM37O94972 964 aa16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 SF3B2Q13435 895 aaKnown RBP16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 FAM196AQ6ZSG2 479 aa16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 MARCH10Q8NA82 808 aaPredicted RBP16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 DDX54Q8TDD1 881 aaKnown RBP16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 RAPGEF4Q8WZA2 1011 aa16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 EYA1Q99502 592 aa16.29■□□□□ 0.2
SHROOM3-202ENST00000466541 NPC1L1Q9UHC9 1359 aa16.28■□□□□ 0.2
SHROOM3-202ENST00000466541 ZNF316A6NFI3 1004 aaPredicted RBP16.27■□□□□ 0.2
SHROOM3-202ENST00000466541 TATP17735 454 aaPredicted RBP16.27■□□□□ 0.2
SHROOM3-202ENST00000466541 MEGF6O75095 1541 aa16.25■□□□□ 0.19
SHROOM3-202ENST00000466541 ZCRB1Q8TBF4 217 aaKnown RBP16.25■□□□□ 0.19
SHROOM3-202ENST00000466541 TNS2Q63HR2 1409 aa16.25■□□□□ 0.19
SHROOM3-202ENST00000466541 DEFB132Q7Z7B7 95 aa16.24■□□□□ 0.19
SHROOM3-202ENST00000466541 CCDC125Q86Z20 511 aa16.24■□□□□ 0.19
SHROOM3-202ENST00000466541 ACSBG1Q96GR2 724 aa16.24■□□□□ 0.19
SHROOM3-202ENST00000466541 OVOS2A0A0G2JMS6 1433 aa16.24■□□□□ 0.19
SHROOM3-202ENST00000466541 PPP2R1AP30153 589 aa16.23■□□□□ 0.19
SHROOM3-202ENST00000466541 RGPD1P0DJD0 1748 aa16.22■□□□□ 0.19
SHROOM3-202ENST00000466541 DIAPH1O60610 1272 aaKnown RBP16.22■□□□□ 0.19
SHROOM3-202ENST00000466541 IL13P35225 146 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms