RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 THRAP3Q9Y2W1 955 aaKnown RBP29.52■■■□□ 2.32
COL6A1-203ENST00000466285 RGPD3A6NKT7 1758 aaPredicted RBP29.51■■■□□ 2.31
COL6A1-203ENST00000466285 RGPD4Q7Z3J3 1758 aa29.51■■■□□ 2.31
COL6A1-203ENST00000466285 PTF1AQ7RTS3 328 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 ARHGEF25Q86VW2 580 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 OVOS2A0A0G2JMS6 1433 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 OVOS2A0A0J9YW53 1432 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 OVOS2Q6IE36 1432 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 KTN1Q86UP2 1357 aaKnown RBP29.5■■■□□ 2.31
COL6A1-203ENST00000466285 PARD3Q8TEW0 1356 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 SBNO2Q9Y2G9 1366 aa29.5■■■□□ 2.31
COL6A1-203ENST00000466285 WDR17Q8IZU2 1322 aa29.48■■■□□ 2.31
COL6A1-203ENST00000466285 TOM1L2Q6ZVM7 507 aa29.47■■■□□ 2.31
COL6A1-203ENST00000466285 TTC21AQ8NDW8 1320 aa29.45■■■□□ 2.31
COL6A1-203ENST00000466285 ABCC6O95255 1503 aa29.43■■■□□ 2.3
COL6A1-203ENST00000466285 NME9Q86XW9 330 aa29.42■■■□□ 2.3
COL6A1-203ENST00000466285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.42■■■□□ 2.3
COL6A1-203ENST00000466285 ZNF692Q9BU19 519 aaPredicted RBP29.42■■■□□ 2.3
COL6A1-203ENST00000466285 CARD11Q9BXL7 1154 aa29.42■■■□□ 2.3
COL6A1-203ENST00000466285 MARCH10Q8NA82 808 aaPredicted RBP29.41■■■□□ 2.3
COL6A1-203ENST00000466285 DDB1Q16531 1140 aa29.4■■■□□ 2.3
COL6A1-203ENST00000466285 CASZ1Q86V15 1759 aa29.39■■■□□ 2.3
COL6A1-203ENST00000466285 USP31Q70CQ4 1352 aa29.39■■■□□ 2.29
COL6A1-203ENST00000466285 KCNH5Q8NCM2 988 aa29.38■■■□□ 2.29
COL6A1-203ENST00000466285 A0A1W2PP64 1363 aa29.38■■■□□ 2.29
COL6A1-203ENST00000466285 TONSLQ96HA7 1378 aa29.37■■■□□ 2.29
COL6A1-203ENST00000466285 ANO8Q9HCE9 1232 aaPredicted RBP29.36■■■□□ 2.29
COL6A1-203ENST00000466285 SLC12A5Q9H2X9 1139 aa29.35■■■□□ 2.29
COL6A1-203ENST00000466285 TNS2Q63HR2 1409 aa29.35■■■□□ 2.29
COL6A1-203ENST00000466285 NHSQ6T4R5 1651 aa29.34■■■□□ 2.29
COL6A1-203ENST00000466285 CSB-PGBD3P0DP91 1061 aa29.34■■■□□ 2.29
COL6A1-203ENST00000466285 CARD10Q9BWT7 1032 aa29.34■■■□□ 2.29
COL6A1-203ENST00000466285 EDC4Q6P2E9 1401 aaKnown RBP29.32■■■□□ 2.28
COL6A1-203ENST00000466285 TMC1Q8TDI8 760 aa29.32■■■□□ 2.28
COL6A1-203ENST00000466285 BCL9O00512 1426 aa29.31■■■□□ 2.28
COL6A1-203ENST00000466285 ERBB3P21860 1342 aa29.3■■■□□ 2.28
COL6A1-203ENST00000466285 CCDC7Q96M83 1385 aa29.28■■■□□ 2.28
COL6A1-203ENST00000466285 PROM2Q8N271 834 aa29.28■■■□□ 2.28
COL6A1-203ENST00000466285 TESK2Q96S53 571 aa29.28■■■□□ 2.28
COL6A1-203ENST00000466285 PDGFDQ9GZP0 370 aaPredicted RBP29.28■■■□□ 2.28
COL6A1-203ENST00000466285 RGPD2P0DJD1 1756 aa29.28■■■□□ 2.28
COL6A1-203ENST00000466285 BCL11BQ9C0K0 894 aaPredicted RBP29.27■■■□□ 2.28
COL6A1-203ENST00000466285 BTAF1O14981 1849 aa29.26■■■□□ 2.27
COL6A1-203ENST00000466285 NBPF14Q5TI25 921 aa29.25■■■□□ 2.27
COL6A1-203ENST00000466285 CDCA7Q9BWT1 371 aaPredicted RBP29.25■■■□□ 2.27
COL6A1-203ENST00000466285 PLSCR1O15162 318 aa29.24■■■□□ 2.27
COL6A1-203ENST00000466285 KCNQ2O43526 872 aa29.23■■■□□ 2.27
COL6A1-203ENST00000466285 MYOM1P52179 1685 aa29.23■■■□□ 2.27
COL6A1-203ENST00000466285 FAM208AQ9UK61 1670 aaKnown RBP29.23■■■□□ 2.27
COL6A1-203ENST00000466285 PAPPAQ13219 1627 aa29.23■■■□□ 2.27
COL6A1-203ENST00000466285 SHANK3Q9BYB0 1731 aa29.23■■■□□ 2.27
COL6A1-203ENST00000466285 C11orf95C9JLR9 678 aaPredicted RBP29.22■■■□□ 2.27
COL6A1-203ENST00000466285 HDGFL2Q7Z4V5 671 aaPredicted RBP29.22■■■□□ 2.27
COL6A1-203ENST00000466285 ST20-MTHFSA0A0A6YYL1 179 aa29.21■■■□□ 2.27
COL6A1-203ENST00000466285 NLRP2Q9NX02 1062 aa29.21■■■□□ 2.27
COL6A1-203ENST00000466285 ANKRD24Q8TF21 1146 aa29.2■■■□□ 2.26
COL6A1-203ENST00000466285 EXOC5O00471 708 aa29.18■■■□□ 2.26
COL6A1-203ENST00000466285 FBLN1P23142 703 aa29.18■■■□□ 2.26
COL6A1-203ENST00000466285 ACSBG1Q96GR2 724 aa29.18■■■□□ 2.26
COL6A1-203ENST00000466285 TERF2IPQ9NYB0 399 aa29.16■■■□□ 2.26
COL6A1-203ENST00000466285 TXNRD1Q16881 649 aa29.15■■■□□ 2.26
COL6A1-203ENST00000466285 DOT1LQ8TEK3 1739 aa29.14■■■□□ 2.26
COL6A1-203ENST00000466285 IL2RBP14784 551 aa29.13■■■□□ 2.25
COL6A1-203ENST00000466285 SPON1Q9HCB6 807 aa29.13■■■□□ 2.25
COL6A1-203ENST00000466285 KIF20BQ96Q89 1820 aa29.13■■■□□ 2.25
COL6A1-203ENST00000466285 KAT6BQ8WYB5 2073 aa29.11■■■□□ 2.25
COL6A1-203ENST00000466285 LTV1Q96GA3 475 aaPredicted RBP29.11■■■□□ 2.25
COL6A1-203ENST00000466285 PUS7Q96PZ0 661 aaKnown RBP29.11■■■□□ 2.25
COL6A1-203ENST00000466285 ZBTB7AO95365 584 aa29.1■■■□□ 2.25
COL6A1-203ENST00000466285 MAP3K19Q56UN5 1328 aa29.1■■■□□ 2.25
COL6A1-203ENST00000466285 NINLQ9Y2I6 1382 aa29.1■■■□□ 2.25
COL6A1-203ENST00000466285 TUBGCP6Q96RT7 1819 aa29.09■■■□□ 2.25
COL6A1-203ENST00000466285 USP47Q96K76 1375 aa29.09■■■□□ 2.25
COL6A1-203ENST00000466285 IP6K1Q92551 441 aa29.08■■■□□ 2.25
COL6A1-203ENST00000466285 ANKRD36BQ8N2N9 1353 aa29.08■■■□□ 2.25
COL6A1-203ENST00000466285 MEGF6O75095 1541 aa29.08■■■□□ 2.25
COL6A1-203ENST00000466285 PPP1R1BQ9UD71 204 aaPredicted RBP29.06■■■□□ 2.24
COL6A1-203ENST00000466285 PTGER2P43116 358 aa29.05■■■□□ 2.24
COL6A1-203ENST00000466285 HOXC9P31274 260 aa29.04■■■□□ 2.24
COL6A1-203ENST00000466285 SLC15A2Q16348 729 aa29.03■■■□□ 2.24
COL6A1-203ENST00000466285 ZNF827Q17R98 1081 aa29.02■■■□□ 2.24
COL6A1-203ENST00000466285 STK32BQ9NY57 414 aa29.02■■■□□ 2.24
COL6A1-203ENST00000466285 ATF5Q9Y2D1 282 aaPredicted RBP29.02■■■□□ 2.24
COL6A1-203ENST00000466285 COG3Q96JB2 828 aa29.01■■■□□ 2.23
COL6A1-203ENST00000466285 LRRC4BQ9NT99 713 aa29.01■■■□□ 2.23
COL6A1-203ENST00000466285 LY75O60449 1722 aa29■■■□□ 2.23
COL6A1-203ENST00000466285 RRS1Q15050 365 aaKnown RBP29■■■□□ 2.23
COL6A1-203ENST00000466285 NSD2O96028 1365 aa29■■■□□ 2.23
COL6A1-203ENST00000466285 TRIM26Q12899 539 aaPredicted RBP28.99■■■□□ 2.23
COL6A1-203ENST00000466285 GGNBP2Q9H3C7 697 aa28.99■■■□□ 2.23
COL6A1-203ENST00000466285 QSER1Q2KHR3 1735 aa28.98■■■□□ 2.23
COL6A1-203ENST00000466285 DDX54Q8TDD1 881 aaKnown RBP28.97■■■□□ 2.23
COL6A1-203ENST00000466285 FYB1O15117 783 aa28.96■■■□□ 2.23
COL6A1-203ENST00000466285 USHBP1Q8N6Y0 703 aa28.96■■■□□ 2.23
COL6A1-203ENST00000466285 RTL1A6NKG5 1358 aa28.96■■■□□ 2.23
COL6A1-203ENST00000466285 SGIP1Q9BQI5 828 aa28.95■■■□□ 2.22
COL6A1-203ENST00000466285 AMPHP49418 695 aa28.94■■■□□ 2.22
COL6A1-203ENST00000466285 KCNQ4P56696 695 aa28.94■■■□□ 2.22
COL6A1-203ENST00000466285 UTRNP46939 3433 aa28.93■■■□□ 2.22
COL6A1-203ENST00000466285 TOGARAM1Q9Y4F4 1720 aa28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms