RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ARHGEF25Q86VW2 580 aa24.85■■□□□ 1.57
COL7A1-205ENST00000465238 MON2Q7Z3U7 1717 aa24.85■■□□□ 1.57
COL7A1-205ENST00000465238 TOM1L2Q6ZVM7 507 aa24.84■■□□□ 1.57
COL7A1-205ENST00000465238 USP47Q96K76 1375 aa24.83■■□□□ 1.57
COL7A1-205ENST00000465238 ST20-MTHFSA0A0A6YYL1 179 aa24.83■■□□□ 1.57
COL7A1-205ENST00000465238 AXIN2Q9Y2T1 843 aa24.83■■□□□ 1.57
COL7A1-205ENST00000465238 WDR17Q8IZU2 1322 aa24.83■■□□□ 1.56
COL7A1-205ENST00000465238 R3HDM1Q15032 1099 aaKnown RBP24.81■■□□□ 1.56
COL7A1-205ENST00000465238 SOX12O15370 315 aa24.8■■□□□ 1.56
COL7A1-205ENST00000465238 NFAT5O94916 1531 aa24.8■■□□□ 1.56
COL7A1-205ENST00000465238 RGPD5Q99666 1765 aa24.8■■□□□ 1.56
COL7A1-205ENST00000465238 LRRC37A3O60309 1634 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 OVOS2A0A0G2JMS6 1433 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 OVOS2A0A0J9YW53 1432 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 OVOS2Q6IE36 1432 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 SLC24A1O60721 1099 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 DDB1Q16531 1140 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 WNK3Q9BYP7 1800 aa24.79■■□□□ 1.56
COL7A1-205ENST00000465238 RREB1Q92766 1687 aa24.78■■□□□ 1.56
COL7A1-205ENST00000465238 CDCA7Q9BWT1 371 aaPredicted RBP24.78■■□□□ 1.56
COL7A1-205ENST00000465238 USP31Q70CQ4 1352 aa24.78■■□□□ 1.56
COL7A1-205ENST00000465238 PEAK1Q9H792 1746 aa24.78■■□□□ 1.56
COL7A1-205ENST00000465238 CD163L1Q9NR16 1453 aa24.77■■□□□ 1.56
COL7A1-205ENST00000465238 ABCC6O95255 1503 aa24.77■■□□□ 1.56
COL7A1-205ENST00000465238 TMC1Q8TDI8 760 aa24.77■■□□□ 1.56
COL7A1-205ENST00000465238 USP54Q70EL1 1684 aa24.77■■□□□ 1.56
COL7A1-205ENST00000465238 HDGFL2Q7Z4V5 671 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-205ENST00000465238 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.76■■□□□ 1.55
COL7A1-205ENST00000465238 PUS7Q96PZ0 661 aaKnown RBP24.76■■□□□ 1.55
COL7A1-205ENST00000465238 CARD10Q9BWT7 1032 aa24.76■■□□□ 1.55
COL7A1-205ENST00000465238 CSB-PGBD3P0DP91 1061 aa24.75■■□□□ 1.55
COL7A1-205ENST00000465238 EIF4G2P78344 907 aaKnown RBP eCLIP24.75■■□□□ 1.55
COL7A1-205ENST00000465238 TESK2Q96S53 571 aa24.74■■□□□ 1.55
COL7A1-205ENST00000465238 NUP188Q5SRE5 1749 aa24.74■■□□□ 1.55
COL7A1-205ENST00000465238 SBF2Q86WG5 1849 aa24.74■■□□□ 1.55
COL7A1-205ENST00000465238 SLC12A5Q9H2X9 1139 aa24.73■■□□□ 1.55
COL7A1-205ENST00000465238 TERF2IPQ9NYB0 399 aa24.73■■□□□ 1.55
COL7A1-205ENST00000465238 EDC4Q6P2E9 1401 aaKnown RBP24.72■■□□□ 1.55
COL7A1-205ENST00000465238 NME9Q86XW9 330 aa24.72■■□□□ 1.55
COL7A1-205ENST00000465238 NBPF14Q5TI25 921 aa24.71■■□□□ 1.55
COL7A1-205ENST00000465238 CCDC7Q96M83 1385 aa24.7■■□□□ 1.55
COL7A1-205ENST00000465238 TMF1P82094 1093 aa24.7■■□□□ 1.54
COL7A1-205ENST00000465238 RGPD3A6NKT7 1758 aaPredicted RBP24.7■■□□□ 1.54
COL7A1-205ENST00000465238 RGPD4Q7Z3J3 1758 aa24.7■■□□□ 1.54
COL7A1-205ENST00000465238 HSPA5P11021 654 aaKnown RBP24.69■■□□□ 1.54
COL7A1-205ENST00000465238 BCL9O00512 1426 aa24.69■■□□□ 1.54
COL7A1-205ENST00000465238 A0A1W2PP64 1363 aa24.68■■□□□ 1.54
COL7A1-205ENST00000465238 LTN1O94822 1766 aa24.68■■□□□ 1.54
COL7A1-205ENST00000465238 MARCH10Q8NA82 808 aaPredicted RBP24.68■■□□□ 1.54
COL7A1-205ENST00000465238 NINLQ9Y2I6 1382 aa24.67■■□□□ 1.54
COL7A1-205ENST00000465238 PLSCR1O15162 318 aa24.67■■□□□ 1.54
COL7A1-205ENST00000465238 BCL11BQ9C0K0 894 aaPredicted RBP24.67■■□□□ 1.54
COL7A1-205ENST00000465238 EXOC5O00471 708 aa24.66■■□□□ 1.54
COL7A1-205ENST00000465238 ERBB3P21860 1342 aa24.65■■□□□ 1.54
COL7A1-205ENST00000465238 CDCA8Q53HL2 280 aa24.64■■□□□ 1.54
COL7A1-205ENST00000465238 TNS2Q63HR2 1409 aa24.62■■□□□ 1.53
COL7A1-205ENST00000465238 NLRP2Q9NX02 1062 aa24.61■■□□□ 1.53
COL7A1-205ENST00000465238 PTF1AQ7RTS3 328 aa24.6■■□□□ 1.53
COL7A1-205ENST00000465238 ZEB1P37275 1124 aaPredicted RBP24.59■■□□□ 1.53
COL7A1-205ENST00000465238 ANKRD24Q8TF21 1146 aa24.59■■□□□ 1.53
COL7A1-205ENST00000465238 IL2RBP14784 551 aa24.57■■□□□ 1.52
COL7A1-205ENST00000465238 IP6K1Q92551 441 aa24.55■■□□□ 1.52
COL7A1-205ENST00000465238 COG3Q96JB2 828 aa24.55■■□□□ 1.52
COL7A1-205ENST00000465238 ANKRD36BQ8N2N9 1353 aa24.54■■□□□ 1.52
COL7A1-205ENST00000465238 FAM208AQ9UK61 1670 aaKnown RBP24.53■■□□□ 1.52
COL7A1-205ENST00000465238 PROM2Q8N271 834 aa24.53■■□□□ 1.52
COL7A1-205ENST00000465238 SPON1Q9HCB6 807 aa24.53■■□□□ 1.52
COL7A1-205ENST00000465238 NHSQ6T4R5 1651 aa24.53■■□□□ 1.52
COL7A1-205ENST00000465238 POLR3GLQ9BT43 218 aa24.52■■□□□ 1.52
COL7A1-205ENST00000465238 KCNQ2O43526 872 aa24.51■■□□□ 1.51
COL7A1-205ENST00000465238 ANO8Q9HCE9 1232 aaPredicted RBP24.51■■□□□ 1.51
COL7A1-205ENST00000465238 TXNRD1Q16881 649 aa24.5■■□□□ 1.51
COL7A1-205ENST00000465238 MAP3K19Q56UN5 1328 aa24.48■■□□□ 1.51
COL7A1-205ENST00000465238 KAT6BQ8WYB5 2073 aa24.47■■□□□ 1.51
COL7A1-205ENST00000465238 CASZ1Q86V15 1759 aa24.47■■□□□ 1.51
COL7A1-205ENST00000465238 HOXC9P31274 260 aa24.46■■□□□ 1.51
COL7A1-205ENST00000465238 AMPHP49418 695 aa24.46■■□□□ 1.51
COL7A1-205ENST00000465238 LTV1Q96GA3 475 aaPredicted RBP24.46■■□□□ 1.51
COL7A1-205ENST00000465238 ACSBG1Q96GR2 724 aa24.46■■□□□ 1.51
COL7A1-205ENST00000465238 PPP1R1BQ9UD71 204 aaPredicted RBP24.46■■□□□ 1.51
COL7A1-205ENST00000465238 STK32BQ9NY57 414 aa24.45■■□□□ 1.5
COL7A1-205ENST00000465238 RTL1A6NKG5 1358 aa24.43■■□□□ 1.5
COL7A1-205ENST00000465238 BTAF1O14981 1849 aa24.43■■□□□ 1.5
COL7A1-205ENST00000465238 FYB1O15117 783 aa24.43■■□□□ 1.5
COL7A1-205ENST00000465238 FBLN1P23142 703 aa24.42■■□□□ 1.5
COL7A1-205ENST00000465238 SLC15A2Q16348 729 aa24.42■■□□□ 1.5
COL7A1-205ENST00000465238 GGNBP2Q9H3C7 697 aa24.41■■□□□ 1.5
COL7A1-205ENST00000465238 MYOM1P52179 1685 aa24.4■■□□□ 1.5
COL7A1-205ENST00000465238 RGPD2P0DJD1 1756 aa24.39■■□□□ 1.5
COL7A1-205ENST00000465238 DDX54Q8TDD1 881 aaKnown RBP24.39■■□□□ 1.49
COL7A1-205ENST00000465238 PDGFDQ9GZP0 370 aaPredicted RBP24.39■■□□□ 1.49
COL7A1-205ENST00000465238 KIF20BQ96Q89 1820 aa24.39■■□□□ 1.49
COL7A1-205ENST00000465238 RRS1Q15050 365 aaKnown RBP24.38■■□□□ 1.49
COL7A1-205ENST00000465238 KIF7Q2M1P5 1343 aa24.37■■□□□ 1.49
COL7A1-205ENST00000465238 ZBTB7AO95365 584 aa24.36■■□□□ 1.49
COL7A1-205ENST00000465238 SMG6Q86US8 1419 aaKnown RBP24.35■■□□□ 1.49
COL7A1-205ENST00000465238 PAPPAQ13219 1627 aa24.35■■□□□ 1.49
COL7A1-205ENST00000465238 ZCRB1Q8TBF4 217 aaKnown RBP24.34■■□□□ 1.49
COL7A1-205ENST00000465238 KIF24Q5T7B8 1368 aa24.33■■□□□ 1.49
COL7A1-205ENST00000465238 NBPF6Q5VWK0 638 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms