RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 SLC24A1O60721 1099 aa26.57■■□□□ 1.84
SF3A1-205ENST00000463818 CSB-PGBD3P0DP91 1061 aa26.57■■□□□ 1.84
SF3A1-205ENST00000463818 CAMKK2Q96RR4 588 aa26.57■■□□□ 1.84
SF3A1-205ENST00000463818 AKAP12Q02952 1782 aa26.56■■□□□ 1.84
SF3A1-205ENST00000463818 PSDA5PKW4 1024 aaPredicted RBP26.56■■□□□ 1.84
SF3A1-205ENST00000463818 DISP2A7MBM2 1401 aa26.55■■□□□ 1.84
SF3A1-205ENST00000463818 DDB1Q16531 1140 aa26.54■■□□□ 1.84
SF3A1-205ENST00000463818 CARD10Q9BWT7 1032 aa26.54■■□□□ 1.84
SF3A1-205ENST00000463818 SRCAPQ6ZRS2 3230 aa26.53■■□□□ 1.84
SF3A1-205ENST00000463818 COL18A1P39060 1754 aa26.53■■□□□ 1.84
SF3A1-205ENST00000463818 C11orf95C9JLR9 678 aaPredicted RBP26.52■■□□□ 1.84
SF3A1-205ENST00000463818 RGPD1P0DJD0 1748 aa26.51■■□□□ 1.83
SF3A1-205ENST00000463818 EDC4Q6P2E9 1401 aaKnown RBP26.51■■□□□ 1.83
SF3A1-205ENST00000463818 A0A1W2PP64 1363 aa26.51■■□□□ 1.83
SF3A1-205ENST00000463818 CDCA7Q9BWT1 371 aaPredicted RBP26.51■■□□□ 1.83
SF3A1-205ENST00000463818 NFAT5O94916 1531 aa26.49■■□□□ 1.83
SF3A1-205ENST00000463818 PCGF6Q9BYE7 350 aa26.49■■□□□ 1.83
SF3A1-205ENST00000463818 R3HDM1Q15032 1099 aaKnown RBP26.48■■□□□ 1.83
SF3A1-205ENST00000463818 MON2Q7Z3U7 1717 aa26.48■■□□□ 1.83
SF3A1-205ENST00000463818 MARCH10Q8NA82 808 aaPredicted RBP26.46■■□□□ 1.83
SF3A1-205ENST00000463818 NINLQ9Y2I6 1382 aa26.46■■□□□ 1.83
SF3A1-205ENST00000463818 EXOC5O00471 708 aa26.45■■□□□ 1.82
SF3A1-205ENST00000463818 TMF1P82094 1093 aa26.45■■□□□ 1.82
SF3A1-205ENST00000463818 PARD3Q8TEW0 1356 aa26.45■■□□□ 1.82
SF3A1-205ENST00000463818 USP47Q96K76 1375 aa26.45■■□□□ 1.82
SF3A1-205ENST00000463818 NLRP2Q9NX02 1062 aa26.44■■□□□ 1.82
SF3A1-205ENST00000463818 TIMELESSQ9UNS1 1208 aa26.44■■□□□ 1.82
SF3A1-205ENST00000463818 OVOS2A0A0G2JMS6 1433 aa26.44■■□□□ 1.82
SF3A1-205ENST00000463818 OVOS2A0A0J9YW53 1432 aa26.44■■□□□ 1.82
SF3A1-205ENST00000463818 OVOS2Q6IE36 1432 aa26.44■■□□□ 1.82
SF3A1-205ENST00000463818 TNS1Q9HBL0 1735 aaKnown RBP26.44■■□□□ 1.82
SF3A1-205ENST00000463818 PARP4Q9UKK3 1724 aaKnown RBP26.43■■□□□ 1.82
SF3A1-205ENST00000463818 CCDC7Q96M83 1385 aa26.43■■□□□ 1.82
SF3A1-205ENST00000463818 ERBB3P21860 1342 aa26.41■■□□□ 1.82
SF3A1-205ENST00000463818 ANKRD24Q8TF21 1146 aa26.41■■□□□ 1.82
SF3A1-205ENST00000463818 COG3Q96JB2 828 aa26.41■■□□□ 1.82
SF3A1-205ENST00000463818 BCL11BQ9C0K0 894 aaPredicted RBP26.4■■□□□ 1.82
SF3A1-205ENST00000463818 NBPF14Q5TI25 921 aa26.39■■□□□ 1.82
SF3A1-205ENST00000463818 PTF1AQ7RTS3 328 aa26.39■■□□□ 1.82
SF3A1-205ENST00000463818 IP6K1Q92551 441 aa26.39■■□□□ 1.82
SF3A1-205ENST00000463818 CLSPNQ9HAW4 1339 aa26.39■■□□□ 1.81
SF3A1-205ENST00000463818 ABCC6O95255 1503 aa26.38■■□□□ 1.81
SF3A1-205ENST00000463818 RGPD5Q99666 1765 aa26.38■■□□□ 1.81
SF3A1-205ENST00000463818 ANKRD36BQ8N2N9 1353 aa26.36■■□□□ 1.81
SF3A1-205ENST00000463818 PLSCR1O15162 318 aa26.36■■□□□ 1.81
SF3A1-205ENST00000463818 FBLN1P23142 703 aa26.36■■□□□ 1.81
SF3A1-205ENST00000463818 CDCA8Q53HL2 280 aa26.36■■□□□ 1.81
SF3A1-205ENST00000463818 LRRC37A3O60309 1634 aa26.35■■□□□ 1.81
SF3A1-205ENST00000463818 USP54Q70EL1 1684 aa26.34■■□□□ 1.81
SF3A1-205ENST00000463818 IL2RBP14784 551 aa26.34■■□□□ 1.81
SF3A1-205ENST00000463818 LTV1Q96GA3 475 aaPredicted RBP26.34■■□□□ 1.81
SF3A1-205ENST00000463818 BCL9O00512 1426 aa26.33■■□□□ 1.81
SF3A1-205ENST00000463818 FYB1O15117 783 aa26.33■■□□□ 1.81
SF3A1-205ENST00000463818 PEAK1Q9H792 1746 aa26.33■■□□□ 1.81
SF3A1-205ENST00000463818 MAP3K19Q56UN5 1328 aa26.32■■□□□ 1.8
SF3A1-205ENST00000463818 AMPHP49418 695 aa26.31■■□□□ 1.8
SF3A1-205ENST00000463818 GGNBP2Q9H3C7 697 aa26.31■■□□□ 1.8
SF3A1-205ENST00000463818 HOXC9P31274 260 aa26.29■■□□□ 1.8
SF3A1-205ENST00000463818 PROM2Q8N271 834 aa26.29■■□□□ 1.8
SF3A1-205ENST00000463818 KCNQ2O43526 872 aa26.28■■□□□ 1.8
SF3A1-205ENST00000463818 TNS2Q63HR2 1409 aa26.27■■□□□ 1.8
SF3A1-205ENST00000463818 ACSBG1Q96GR2 724 aa26.26■■□□□ 1.79
SF3A1-205ENST00000463818 RRS1Q15050 365 aaKnown RBP26.25■■□□□ 1.79
SF3A1-205ENST00000463818 LRP5O75197 1615 aa26.25■■□□□ 1.79
SF3A1-205ENST00000463818 CARD14Q9BXL6 1004 aa26.24■■□□□ 1.79
SF3A1-205ENST00000463818 LTN1O94822 1766 aa26.24■■□□□ 1.79
SF3A1-205ENST00000463818 WNK3Q9BYP7 1800 aa26.23■■□□□ 1.79
SF3A1-205ENST00000463818 CCER1Q8TC90 406 aaPredicted RBP26.23■■□□□ 1.79
SF3A1-205ENST00000463818 RREB1Q92766 1687 aa26.22■■□□□ 1.79
SF3A1-205ENST00000463818 SBF2Q86WG5 1849 aa26.21■■□□□ 1.79
SF3A1-205ENST00000463818 TXNRD1Q16881 649 aa26.21■■□□□ 1.79
SF3A1-205ENST00000463818 DDX54Q8TDD1 881 aaKnown RBP26.21■■□□□ 1.79
SF3A1-205ENST00000463818 ANO8Q9HCE9 1232 aaPredicted RBP26.21■■□□□ 1.79
SF3A1-205ENST00000463818 NUP188Q5SRE5 1749 aa26.19■■□□□ 1.78
SF3A1-205ENST00000463818 NBPF6Q5VWK0 638 aa26.17■■□□□ 1.78
SF3A1-205ENST00000463818 NBPF4Q96M43 638 aa26.17■■□□□ 1.78
SF3A1-205ENST00000463818 POLR3GLQ9BT43 218 aa26.16■■□□□ 1.78
SF3A1-205ENST00000463818 SPON1Q9HCB6 807 aa26.16■■□□□ 1.78
SF3A1-205ENST00000463818 RTL1A6NKG5 1358 aa26.16■■□□□ 1.78
SF3A1-205ENST00000463818 HSP90AB2PQ58FF8 381 aa26.15■■□□□ 1.78
SF3A1-205ENST00000463818 ZCRB1Q8TBF4 217 aaKnown RBP26.14■■□□□ 1.78
SF3A1-205ENST00000463818 NSD3Q9BZ95 1437 aa26.14■■□□□ 1.77
SF3A1-205ENST00000463818 EIF4G2P78344 907 aaKnown RBP eCLIP26.13■■□□□ 1.77
SF3A1-205ENST00000463818 USHBP1Q8N6Y0 703 aa26.13■■□□□ 1.77
SF3A1-205ENST00000463818 STK32BQ9NY57 414 aa26.13■■□□□ 1.77
SF3A1-205ENST00000463818 HSPA5P11021 654 aaKnown RBP26.12■■□□□ 1.77
SF3A1-205ENST00000463818 SLC15A2Q16348 729 aa26.11■■□□□ 1.77
SF3A1-205ENST00000463818 PDGFDQ9GZP0 370 aaPredicted RBP26.11■■□□□ 1.77
SF3A1-205ENST00000463818 RGPD3A6NKT7 1758 aaPredicted RBP26.1■■□□□ 1.77
SF3A1-205ENST00000463818 RGPD4Q7Z3J3 1758 aa26.1■■□□□ 1.77
SF3A1-205ENST00000463818 INSRP06213 1382 aa26.09■■□□□ 1.77
SF3A1-205ENST00000463818 EMILIN1Q9Y6C2 1016 aa26.09■■□□□ 1.77
SF3A1-205ENST00000463818 PRIM1P49642 420 aaKnown RBP26.08■■□□□ 1.77
SF3A1-205ENST00000463818 RAPGEF4Q8WZA2 1011 aa26.08■■□□□ 1.77
SF3A1-205ENST00000463818 PPP1R1BQ9UD71 204 aaPredicted RBP26.08■■□□□ 1.77
SF3A1-205ENST00000463818 FLT4P35916 1363 aa26.07■■□□□ 1.76
SF3A1-205ENST00000463818 SYTL4Q96C24 671 aaPredicted RBP26.07■■□□□ 1.76
SF3A1-205ENST00000463818 CGNL1Q0VF96 1302 aa26.07■■□□□ 1.76
SF3A1-205ENST00000463818 KIF24Q5T7B8 1368 aa26.07■■□□□ 1.76
SF3A1-205ENST00000463818 SMG6Q86US8 1419 aaKnown RBP26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms