RNA–Protein interactions for RNA: ENST00000463615.1

PDLIM4-205, Transcript of PDZ and LIM domain 4, humanhuman

TSL 2

Gene PDLIM4, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-205ENST00000463615 HDGFL2Q7Z4V5 671 aaPredicted RBP29.02■■■□□ 2.24
PDLIM4-205ENST00000463615 EDC4Q6P2E9 1401 aaKnown RBP29.02■■■□□ 2.24
PDLIM4-205ENST00000463615 TERF2IPQ9NYB0 399 aa29.01■■■□□ 2.23
PDLIM4-205ENST00000463615 TMC1Q8TDI8 760 aa29■■■□□ 2.23
PDLIM4-205ENST00000463615 TIMELESSQ9UNS1 1208 aa29■■■□□ 2.23
PDLIM4-205ENST00000463615 CLSPNQ9HAW4 1339 aa28.99■■■□□ 2.23
PDLIM4-205ENST00000463615 ZBTB7CA1YPR0 619 aa28.99■■■□□ 2.23
PDLIM4-205ENST00000463615 A0A1W2PP64 1363 aa28.99■■■□□ 2.23
PDLIM4-205ENST00000463615 C11orf95C9JLR9 678 aaPredicted RBP28.98■■■□□ 2.23
PDLIM4-205ENST00000463615 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.97■■■□□ 2.23
PDLIM4-205ENST00000463615 EN1Q05925 392 aaPredicted RBP28.96■■■□□ 2.23
PDLIM4-205ENST00000463615 TOM1L2Q6ZVM7 507 aa28.96■■■□□ 2.23
PDLIM4-205ENST00000463615 NME9Q86XW9 330 aa28.96■■■□□ 2.23
PDLIM4-205ENST00000463615 CDCA7Q9BWT1 371 aaPredicted RBP28.95■■■□□ 2.22
PDLIM4-205ENST00000463615 SRCAPQ6ZRS2 3230 aa28.94■■■□□ 2.22
PDLIM4-205ENST00000463615 PARD3Q8TEW0 1356 aa28.94■■■□□ 2.22
PDLIM4-205ENST00000463615 TRIM37O94972 964 aa28.94■■■□□ 2.22
PDLIM4-205ENST00000463615 CARD10Q9BWT7 1032 aa28.94■■■□□ 2.22
PDLIM4-205ENST00000463615 OVOS2A0A0J9YW53 1432 aa28.93■■■□□ 2.22
PDLIM4-205ENST00000463615 OVOS2Q6IE36 1432 aa28.93■■■□□ 2.22
PDLIM4-205ENST00000463615 USP47Q96K76 1375 aa28.92■■■□□ 2.22
PDLIM4-205ENST00000463615 LRRC37A3O60309 1634 aa28.92■■■□□ 2.22
PDLIM4-205ENST00000463615 CAMKK2Q96RR4 588 aa28.92■■■□□ 2.22
PDLIM4-205ENST00000463615 RGPD5Q99666 1765 aa28.92■■■□□ 2.22
PDLIM4-205ENST00000463615 SOX12O15370 315 aa28.91■■■□□ 2.22
PDLIM4-205ENST00000463615 WNK3Q9BYP7 1800 aa28.91■■■□□ 2.22
PDLIM4-205ENST00000463615 PEAK1Q9H792 1746 aa28.91■■■□□ 2.22
PDLIM4-205ENST00000463615 OVOS2A0A0G2JMS6 1433 aa28.89■■■□□ 2.22
PDLIM4-205ENST00000463615 DDB1Q16531 1140 aa28.89■■■□□ 2.22
PDLIM4-205ENST00000463615 CCDC7Q96M83 1385 aa28.88■■■□□ 2.21
PDLIM4-205ENST00000463615 BCL9O00512 1426 aa28.88■■■□□ 2.21
PDLIM4-205ENST00000463615 EZH2Q15910 746 aaKnown RBP28.87■■■□□ 2.21
PDLIM4-205ENST00000463615 APBA3O96018 575 aa28.86■■■□□ 2.21
PDLIM4-205ENST00000463615 CSB-PGBD3P0DP91 1061 aa28.86■■■□□ 2.21
PDLIM4-205ENST00000463615 TMF1P82094 1093 aa28.86■■■□□ 2.21
PDLIM4-205ENST00000463615 ANKRD36BQ8N2N9 1353 aa28.86■■■□□ 2.21
PDLIM4-205ENST00000463615 ERBB3P21860 1342 aa28.85■■■□□ 2.21
PDLIM4-205ENST00000463615 LTN1O94822 1766 aa28.84■■■□□ 2.21
PDLIM4-205ENST00000463615 LRP5O75197 1615 aa28.82■■■□□ 2.2
PDLIM4-205ENST00000463615 RREB1Q92766 1687 aa28.82■■■□□ 2.2
PDLIM4-205ENST00000463615 CDCA8Q53HL2 280 aa28.8■■■□□ 2.2
PDLIM4-205ENST00000463615 SBF2Q86WG5 1849 aa28.79■■■□□ 2.2
PDLIM4-205ENST00000463615 MARCH10Q8NA82 808 aaPredicted RBP28.79■■■□□ 2.2
PDLIM4-205ENST00000463615 PSDA5PKW4 1024 aaPredicted RBP28.78■■■□□ 2.2
PDLIM4-205ENST00000463615 IP6K1Q92551 441 aa28.77■■■□□ 2.2
PDLIM4-205ENST00000463615 COG3Q96JB2 828 aa28.77■■■□□ 2.2
PDLIM4-205ENST00000463615 RGPD3A6NKT7 1758 aaPredicted RBP28.77■■■□□ 2.2
PDLIM4-205ENST00000463615 RGPD4Q7Z3J3 1758 aa28.77■■■□□ 2.2
PDLIM4-205ENST00000463615 TNS2Q63HR2 1409 aa28.77■■■□□ 2.2
PDLIM4-205ENST00000463615 EXOC5O00471 708 aa28.76■■■□□ 2.19
PDLIM4-205ENST00000463615 PCGF6Q9BYE7 350 aa28.76■■■□□ 2.19
PDLIM4-205ENST00000463615 BCL11BQ9C0K0 894 aaPredicted RBP28.76■■■□□ 2.19
PDLIM4-205ENST00000463615 PLSCR1O15162 318 aa28.75■■■□□ 2.19
PDLIM4-205ENST00000463615 ANKRD24Q8TF21 1146 aa28.75■■■□□ 2.19
PDLIM4-205ENST00000463615 R3HDM1Q15032 1099 aaKnown RBP28.74■■■□□ 2.19
PDLIM4-205ENST00000463615 NUP188Q5SRE5 1749 aa28.74■■■□□ 2.19
PDLIM4-205ENST00000463615 NLRP2Q9NX02 1062 aa28.73■■■□□ 2.19
PDLIM4-205ENST00000463615 FYB1O15117 783 aa28.71■■■□□ 2.19
PDLIM4-205ENST00000463615 FAM208AQ9UK61 1670 aaKnown RBP28.7■■■□□ 2.19
PDLIM4-205ENST00000463615 IL2RBP14784 551 aa28.7■■■□□ 2.18
PDLIM4-205ENST00000463615 MAP3K19Q56UN5 1328 aa28.69■■■□□ 2.18
PDLIM4-205ENST00000463615 NBPF14Q5TI25 921 aa28.68■■■□□ 2.18
PDLIM4-205ENST00000463615 RTL1A6NKG5 1358 aa28.67■■■□□ 2.18
PDLIM4-205ENST00000463615 HOXC9P31274 260 aa28.66■■■□□ 2.18
PDLIM4-205ENST00000463615 MYOM1P52179 1685 aa28.65■■■□□ 2.18
PDLIM4-205ENST00000463615 PTF1AQ7RTS3 328 aa28.65■■■□□ 2.18
PDLIM4-205ENST00000463615 AMPHP49418 695 aa28.62■■■□□ 2.17
PDLIM4-205ENST00000463615 GGNBP2Q9H3C7 697 aa28.62■■■□□ 2.17
PDLIM4-205ENST00000463615 FBLN1P23142 703 aa28.61■■■□□ 2.17
PDLIM4-205ENST00000463615 CARD14Q9BXL6 1004 aa28.61■■■□□ 2.17
PDLIM4-205ENST00000463615 NHSQ6T4R5 1651 aa28.6■■■□□ 2.17
PDLIM4-205ENST00000463615 KIF24Q5T7B8 1368 aa28.6■■■□□ 2.17
PDLIM4-205ENST00000463615 KIF20BQ96Q89 1820 aa28.59■■■□□ 2.17
PDLIM4-205ENST00000463615 PROM2Q8N271 834 aa28.59■■■□□ 2.17
PDLIM4-205ENST00000463615 LTV1Q96GA3 475 aaPredicted RBP28.57■■■□□ 2.16
PDLIM4-205ENST00000463615 RRS1Q15050 365 aaKnown RBP28.56■■■□□ 2.16
PDLIM4-205ENST00000463615 NSD3Q9BZ95 1437 aa28.55■■■□□ 2.16
PDLIM4-205ENST00000463615 KCNQ2O43526 872 aa28.55■■■□□ 2.16
PDLIM4-205ENST00000463615 CCER1Q8TC90 406 aaPredicted RBP28.55■■■□□ 2.16
PDLIM4-205ENST00000463615 INSRP06213 1382 aa28.53■■■□□ 2.16
PDLIM4-205ENST00000463615 TXNRD1Q16881 649 aa28.53■■■□□ 2.16
PDLIM4-205ENST00000463615 EIF4G2P78344 907 aaKnown RBP eCLIP28.52■■■□□ 2.16
PDLIM4-205ENST00000463615 FLT4P35916 1363 aa28.51■■■□□ 2.16
PDLIM4-205ENST00000463615 ANO8Q9HCE9 1232 aaPredicted RBP28.51■■■□□ 2.15
PDLIM4-205ENST00000463615 SMG6Q86US8 1419 aaKnown RBP28.5■■■□□ 2.15
PDLIM4-205ENST00000463615 RGPD2P0DJD1 1756 aa28.5■■■□□ 2.15
PDLIM4-205ENST00000463615 CGNL1Q0VF96 1302 aa28.49■■■□□ 2.15
PDLIM4-205ENST00000463615 NBPF6Q5VWK0 638 aa28.49■■■□□ 2.15
PDLIM4-205ENST00000463615 ACSBG1Q96GR2 724 aa28.49■■■□□ 2.15
PDLIM4-205ENST00000463615 NBPF4Q96M43 638 aa28.49■■■□□ 2.15
PDLIM4-205ENST00000463615 MEGF6O75095 1541 aa28.48■■■□□ 2.15
PDLIM4-205ENST00000463615 HSPA5P11021 654 aaKnown RBP28.46■■■□□ 2.15
PDLIM4-205ENST00000463615 HSP90AB2PQ58FF8 381 aa28.46■■■□□ 2.15
PDLIM4-205ENST00000463615 ZCRB1Q8TBF4 217 aaKnown RBP28.46■■■□□ 2.15
PDLIM4-205ENST00000463615 BTAF1O14981 1849 aa28.46■■■□□ 2.15
PDLIM4-205ENST00000463615 DDX54Q8TDD1 881 aaKnown RBP28.45■■■□□ 2.14
PDLIM4-205ENST00000463615 SHANK3Q9BYB0 1731 aa28.45■■■□□ 2.14
PDLIM4-205ENST00000463615 CASZ1Q86V15 1759 aa28.45■■■□□ 2.14
PDLIM4-205ENST00000463615 ANKRD26Q9UPS8 1709 aa28.44■■■□□ 2.14
PDLIM4-205ENST00000463615 SPON1Q9HCB6 807 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms