RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 OVOS2A0A0J9YW53 1432 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 OVOS2Q6IE36 1432 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 NUP188Q5SRE5 1749 aa22.98■■□□□ 1.27
COL7A1-204ENST00000462475 KTN1Q86UP2 1357 aaKnown RBP22.98■■□□□ 1.27
COL7A1-204ENST00000462475 NFAT5O94916 1531 aa22.98■■□□□ 1.27
COL7A1-204ENST00000462475 KCNH5Q8NCM2 988 aa22.97■■□□□ 1.27
COL7A1-204ENST00000462475 DDB1Q16531 1140 aa22.96■■□□□ 1.27
COL7A1-204ENST00000462475 CARD11Q9BXL7 1154 aa22.95■■□□□ 1.26
COL7A1-204ENST00000462475 WNK3Q9BYP7 1800 aa22.94■■□□□ 1.26
COL7A1-204ENST00000462475 MON2Q7Z3U7 1717 aa22.94■■□□□ 1.26
COL7A1-204ENST00000462475 CD163L1Q9NR16 1453 aa22.93■■□□□ 1.26
COL7A1-204ENST00000462475 C11orf95C9JLR9 678 aaPredicted RBP22.93■■□□□ 1.26
COL7A1-204ENST00000462475 CSB-PGBD3P0DP91 1061 aa22.91■■□□□ 1.26
COL7A1-204ENST00000462475 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.91■■□□□ 1.26
COL7A1-204ENST00000462475 PTF1AQ7RTS3 328 aa22.9■■□□□ 1.26
COL7A1-204ENST00000462475 MARCH10Q8NA82 808 aaPredicted RBP22.9■■□□□ 1.26
COL7A1-204ENST00000462475 CARD10Q9BWT7 1032 aa22.9■■□□□ 1.26
COL7A1-204ENST00000462475 RGPD5Q99666 1765 aa22.9■■□□□ 1.26
COL7A1-204ENST00000462475 USP31Q70CQ4 1352 aa22.89■■□□□ 1.26
COL7A1-204ENST00000462475 TONSLQ96HA7 1378 aa22.89■■□□□ 1.26
COL7A1-204ENST00000462475 ABCC6O95255 1503 aa22.89■■□□□ 1.26
COL7A1-204ENST00000462475 NBPF14Q5TI25 921 aa22.89■■□□□ 1.25
COL7A1-204ENST00000462475 NME9Q86XW9 330 aa22.89■■□□□ 1.25
COL7A1-204ENST00000462475 CDCA7Q9BWT1 371 aaPredicted RBP22.89■■□□□ 1.25
COL7A1-204ENST00000462475 USP54Q70EL1 1684 aa22.87■■□□□ 1.25
COL7A1-204ENST00000462475 SBF2Q86WG5 1849 aa22.87■■□□□ 1.25
COL7A1-204ENST00000462475 TMC1Q8TDI8 760 aa22.87■■□□□ 1.25
COL7A1-204ENST00000462475 BCL9O00512 1426 aa22.86■■□□□ 1.25
COL7A1-204ENST00000462475 BCL11BQ9C0K0 894 aaPredicted RBP22.86■■□□□ 1.25
COL7A1-204ENST00000462475 SLC12A5Q9H2X9 1139 aa22.86■■□□□ 1.25
COL7A1-204ENST00000462475 CCDC7Q96M83 1385 aa22.86■■□□□ 1.25
COL7A1-204ENST00000462475 RGPD3A6NKT7 1758 aaPredicted RBP22.86■■□□□ 1.25
COL7A1-204ENST00000462475 RGPD4Q7Z3J3 1758 aa22.86■■□□□ 1.25
COL7A1-204ENST00000462475 PLSCR1O15162 318 aa22.84■■□□□ 1.25
COL7A1-204ENST00000462475 A0A1W2PP64 1363 aa22.84■■□□□ 1.25
COL7A1-204ENST00000462475 EDC4Q6P2E9 1401 aaKnown RBP22.83■■□□□ 1.25
COL7A1-204ENST00000462475 HDGFL2Q7Z4V5 671 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-204ENST00000462475 ANO8Q9HCE9 1232 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-204ENST00000462475 ERBB3P21860 1342 aa22.82■■□□□ 1.24
COL7A1-204ENST00000462475 TNS2Q63HR2 1409 aa22.82■■□□□ 1.24
COL7A1-204ENST00000462475 EXOC5O00471 708 aa22.8■■□□□ 1.24
COL7A1-204ENST00000462475 LTN1O94822 1766 aa22.78■■□□□ 1.24
COL7A1-204ENST00000462475 PROM2Q8N271 834 aa22.78■■□□□ 1.24
COL7A1-204ENST00000462475 TESK2Q96S53 571 aa22.78■■□□□ 1.24
COL7A1-204ENST00000462475 NLRP2Q9NX02 1062 aa22.78■■□□□ 1.24
COL7A1-204ENST00000462475 TERF2IPQ9NYB0 399 aa22.78■■□□□ 1.24
COL7A1-204ENST00000462475 PUS7Q96PZ0 661 aaKnown RBP22.77■■□□□ 1.24
COL7A1-204ENST00000462475 SPON1Q9HCB6 807 aa22.77■■□□□ 1.24
COL7A1-204ENST00000462475 ANKRD24Q8TF21 1146 aa22.76■■□□□ 1.23
COL7A1-204ENST00000462475 ST20-MTHFSA0A0A6YYL1 179 aa22.75■■□□□ 1.23
COL7A1-204ENST00000462475 KCNQ2O43526 872 aa22.75■■□□□ 1.23
COL7A1-204ENST00000462475 CASZ1Q86V15 1759 aa22.73■■□□□ 1.23
COL7A1-204ENST00000462475 IL2RBP14784 551 aa22.73■■□□□ 1.23
COL7A1-204ENST00000462475 TXNRD1Q16881 649 aa22.73■■□□□ 1.23
COL7A1-204ENST00000462475 NINLQ9Y2I6 1382 aa22.73■■□□□ 1.23
COL7A1-204ENST00000462475 NHSQ6T4R5 1651 aa22.72■■□□□ 1.23
COL7A1-204ENST00000462475 PDGFDQ9GZP0 370 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-204ENST00000462475 PPP1R1BQ9UD71 204 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-204ENST00000462475 ACSBG1Q96GR2 724 aa22.71■■□□□ 1.23
COL7A1-204ENST00000462475 IP6K1Q92551 441 aa22.68■■□□□ 1.22
COL7A1-204ENST00000462475 LTV1Q96GA3 475 aaPredicted RBP22.67■■□□□ 1.22
COL7A1-204ENST00000462475 STK32BQ9NY57 414 aa22.67■■□□□ 1.22
COL7A1-204ENST00000462475 MAP3K19Q56UN5 1328 aa22.66■■□□□ 1.22
COL7A1-204ENST00000462475 ZBTB7AO95365 584 aa22.66■■□□□ 1.22
COL7A1-204ENST00000462475 COG3Q96JB2 828 aa22.66■■□□□ 1.22
COL7A1-204ENST00000462475 ANKRD36BQ8N2N9 1353 aa22.65■■□□□ 1.22
COL7A1-204ENST00000462475 FBLN1P23142 703 aa22.65■■□□□ 1.22
COL7A1-204ENST00000462475 SLC15A2Q16348 729 aa22.65■■□□□ 1.22
COL7A1-204ENST00000462475 USP47Q96K76 1375 aa22.63■■□□□ 1.21
COL7A1-204ENST00000462475 FAM208AQ9UK61 1670 aaKnown RBP22.63■■□□□ 1.21
COL7A1-204ENST00000462475 PAPPAQ13219 1627 aa22.62■■□□□ 1.21
COL7A1-204ENST00000462475 SLC24A1O60721 1099 aa22.62■■□□□ 1.21
COL7A1-204ENST00000462475 HOXC9P31274 260 aa22.62■■□□□ 1.21
COL7A1-204ENST00000462475 PTGER2P43116 358 aa22.62■■□□□ 1.21
COL7A1-204ENST00000462475 TRIM26Q12899 539 aaPredicted RBP22.62■■□□□ 1.21
COL7A1-204ENST00000462475 BTAF1O14981 1849 aa22.61■■□□□ 1.21
COL7A1-204ENST00000462475 MYOM1P52179 1685 aa22.61■■□□□ 1.21
COL7A1-204ENST00000462475 AMPHP49418 695 aa22.6■■□□□ 1.21
COL7A1-204ENST00000462475 DDX54Q8TDD1 881 aaKnown RBP22.6■■□□□ 1.21
COL7A1-204ENST00000462475 ATF5Q9Y2D1 282 aaPredicted RBP22.6■■□□□ 1.21
COL7A1-204ENST00000462475 TMF1P82094 1093 aa22.59■■□□□ 1.21
COL7A1-204ENST00000462475 MEGF6O75095 1541 aa22.57■■□□□ 1.2
COL7A1-204ENST00000462475 RRS1Q15050 365 aaKnown RBP22.57■■□□□ 1.2
COL7A1-204ENST00000462475 ZNF827Q17R98 1081 aa22.57■■□□□ 1.2
COL7A1-204ENST00000462475 GGNBP2Q9H3C7 697 aa22.57■■□□□ 1.2
COL7A1-204ENST00000462475 LRRC4BQ9NT99 713 aa22.57■■□□□ 1.2
COL7A1-204ENST00000462475 RTL1A6NKG5 1358 aa22.57■■□□□ 1.2
COL7A1-204ENST00000462475 FYB1O15117 783 aa22.56■■□□□ 1.2
COL7A1-204ENST00000462475 YY1P25490 414 aa22.56■■□□□ 1.2
COL7A1-204ENST00000462475 MTFR1LQ9H019 292 aa22.55■■□□□ 1.2
COL7A1-204ENST00000462475 RGPD2P0DJD1 1756 aa22.54■■□□□ 1.2
COL7A1-204ENST00000462475 SGIP1Q9BQI5 828 aa22.53■■□□□ 1.2
COL7A1-204ENST00000462475 SHANK3Q9BYB0 1731 aa22.53■■□□□ 1.2
COL7A1-204ENST00000462475 DCAF8L1A6NGE4 600 aa22.52■■□□□ 1.2
COL7A1-204ENST00000462475 UTRNP46939 3433 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 NSD2O96028 1365 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 DOT1LQ8TEK3 1739 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 NBPF6Q5VWK0 638 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 USHBP1Q8N6Y0 703 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 ZCRB1Q8TBF4 217 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms