RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 EVA1CP58658 441 aa31.38■■■□□ 2.61
CCDC28B-203ENST00000461819 GJD4Q96KN9 370 aaPredicted RBP31.38■■■□□ 2.61
CCDC28B-203ENST00000461819 COL5A2P05997 1499 aaPredicted RBP31.37■■■□□ 2.61
CCDC28B-203ENST00000461819 CDK12Q9NYV4 1490 aaPredicted RBP31.37■■■□□ 2.61
CCDC28B-203ENST00000461819 KNSTRNQ9Y448 316 aa31.36■■■□□ 2.61
CCDC28B-203ENST00000461819 RGS12O14924 1447 aa31.32■■■□□ 2.61
CCDC28B-203ENST00000461819 NSD2O96028 1365 aa31.32■■■□□ 2.6
CCDC28B-203ENST00000461819 AXIN2Q9Y2T1 843 aa31.31■■■□□ 2.6
CCDC28B-203ENST00000461819 SPATA31A5Q5VU36 1347 aa31.29■■■□□ 2.6
CCDC28B-203ENST00000461819 SPATA31A7Q8IWB4 1347 aa31.29■■■□□ 2.6
CCDC28B-203ENST00000461819 FBLN1P23142 703 aa31.29■■■□□ 2.6
CCDC28B-203ENST00000461819 MAP2P11137 1827 aaKnown RBP31.28■■■□□ 2.6
CCDC28B-203ENST00000461819 MAP3K19Q56UN5 1328 aa31.28■■■□□ 2.6
CCDC28B-203ENST00000461819 LARP1Q6PKG0 1096 aaKnown RBP31.28■■■□□ 2.6
CCDC28B-203ENST00000461819 RRS1Q15050 365 aaKnown RBP31.27■■■□□ 2.6
CCDC28B-203ENST00000461819 AMPHP49418 695 aa31.26■■■□□ 2.59
CCDC28B-203ENST00000461819 SPATA31A1Q5TZJ5 1347 aa31.25■■■□□ 2.59
CCDC28B-203ENST00000461819 BLMP54132 1417 aaPredicted RBP31.25■■■□□ 2.59
CCDC28B-203ENST00000461819 CRB1P82279 1406 aa31.25■■■□□ 2.59
CCDC28B-203ENST00000461819 CSB-PGBD3P0DP91 1061 aa31.25■■■□□ 2.59
CCDC28B-203ENST00000461819 USP35Q9P2H5 1018 aa31.25■■■□□ 2.59
CCDC28B-203ENST00000461819 RTL1A6NKG5 1358 aa31.24■■■□□ 2.59
CCDC28B-203ENST00000461819 WDR17Q8IZU2 1322 aa31.24■■■□□ 2.59
CCDC28B-203ENST00000461819 A0A0G2JS52 829 aa31.23■■■□□ 2.59
CCDC28B-203ENST00000461819 MYT1Q01538 1121 aa31.23■■■□□ 2.59
CCDC28B-203ENST00000461819 TOM1L2Q6ZVM7 507 aa31.23■■■□□ 2.59
CCDC28B-203ENST00000461819 IP6K1Q92551 441 aa31.23■■■□□ 2.59
CCDC28B-203ENST00000461819 PEAK1Q9H792 1746 aa31.23■■■□□ 2.59
CCDC28B-203ENST00000461819 FAM208AQ9UK61 1670 aaKnown RBP31.22■■■□□ 2.59
CCDC28B-203ENST00000461819 BRWD3Q6RI45 1802 aa31.22■■■□□ 2.59
CCDC28B-203ENST00000461819 TNNT2P45379 298 aaPredicted RBP31.22■■■□□ 2.59
CCDC28B-203ENST00000461819 FAM98CQ17RN3 349 aaKnown RBP31.22■■■□□ 2.59
CCDC28B-203ENST00000461819 AMER1Q5JTC6 1135 aaPredicted RBP31.22■■■□□ 2.59
CCDC28B-203ENST00000461819 PER1O15534 1290 aaPredicted RBP31.21■■■□□ 2.59
CCDC28B-203ENST00000461819 HOXC9P31274 260 aa31.21■■■□□ 2.59
CCDC28B-203ENST00000461819 MORC1Q86VD1 984 aa31.21■■■□□ 2.59
CCDC28B-203ENST00000461819 WNK3Q9BYP7 1800 aa31.2■■■□□ 2.59
CCDC28B-203ENST00000461819 ERBB3P21860 1342 aa31.2■■■□□ 2.58
CCDC28B-203ENST00000461819 ANKRD24Q8TF21 1146 aa31.19■■■□□ 2.58
CCDC28B-203ENST00000461819 THSD7AQ9UPZ6 1657 aa31.19■■■□□ 2.58
CCDC28B-203ENST00000461819 FLT4P35916 1363 aa31.17■■■□□ 2.58
CCDC28B-203ENST00000461819 SEPT12Q8IYM1 358 aa31.17■■■□□ 2.58
CCDC28B-203ENST00000461819 TCP11L2Q8N4U5 519 aa31.17■■■□□ 2.58
CCDC28B-203ENST00000461819 EMILIN1Q9Y6C2 1016 aa31.17■■■□□ 2.58
CCDC28B-203ENST00000461819 KIF24Q5T7B8 1368 aa31.17■■■□□ 2.58
CCDC28B-203ENST00000461819 CC2D1BQ5T0F9 858 aaKnown RBP31.16■■■□□ 2.58
CCDC28B-203ENST00000461819 LTV1Q96GA3 475 aaPredicted RBP31.16■■■□□ 2.58
CCDC28B-203ENST00000461819 PPM1GO15355 546 aaPredicted RBP31.15■■■□□ 2.58
CCDC28B-203ENST00000461819 THRAP3Q9Y2W1 955 aaKnown RBP31.15■■■□□ 2.58
CCDC28B-203ENST00000461819 ONECUT3O60422 494 aaPredicted RBP31.14■■■□□ 2.58
CCDC28B-203ENST00000461819 CNGB1Q14028 1251 aaPredicted RBP31.14■■■□□ 2.58
CCDC28B-203ENST00000461819 RGPD2P0DJD1 1756 aa31.14■■■□□ 2.58
CCDC28B-203ENST00000461819 SMG6Q86US8 1419 aaKnown RBP31.14■■■□□ 2.58
CCDC28B-203ENST00000461819 NLRP2Q9NX02 1062 aa31.13■■■□□ 2.57
CCDC28B-203ENST00000461819 NPC1L1Q9UHC9 1359 aa31.13■■■□□ 2.57
CCDC28B-203ENST00000461819 BARGINQ6ZT62 677 aa31.12■■■□□ 2.57
CCDC28B-203ENST00000461819 CARD10Q9BWT7 1032 aa31.12■■■□□ 2.57
CCDC28B-203ENST00000461819 INSRP06213 1382 aa31.11■■■□□ 2.57
CCDC28B-203ENST00000461819 PARP4Q9UKK3 1724 aaKnown RBP31.1■■■□□ 2.57
CCDC28B-203ENST00000461819 POLKQ9UBT6 870 aa31.1■■■□□ 2.57
CCDC28B-203ENST00000461819 SOCS7O14512 581 aa31.09■■■□□ 2.57
CCDC28B-203ENST00000461819 HSP90AB2PQ58FF8 381 aa31.09■■■□□ 2.57
CCDC28B-203ENST00000461819 LRRC37A3O60309 1634 aa31.06■■■□□ 2.56
CCDC28B-203ENST00000461819 DDX10Q13206 875 aaKnown RBP31.04■■■□□ 2.56
CCDC28B-203ENST00000461819 KRT27Q7Z3Y8 459 aa31.04■■■□□ 2.56
CCDC28B-203ENST00000461819 CDCA7Q9BWT1 371 aaPredicted RBP31.02■■■□□ 2.56
CCDC28B-203ENST00000461819 DISP2A7MBM2 1401 aa31■■■□□ 2.55
CCDC28B-203ENST00000461819 PDE3BQ13370 1112 aa30.97■■■□□ 2.55
CCDC28B-203ENST00000461819 EP400Q96L91 3159 aa30.97■■■□□ 2.55
CCDC28B-203ENST00000461819 ZNF316A6NFI3 1004 aaPredicted RBP30.96■■■□□ 2.55
CCDC28B-203ENST00000461819 IL2RBP14784 551 aa30.96■■■□□ 2.55
CCDC28B-203ENST00000461819 DDB1Q16531 1140 aa30.96■■■□□ 2.55
CCDC28B-203ENST00000461819 NBPF6Q5VWK0 638 aa30.95■■■□□ 2.55
CCDC28B-203ENST00000461819 NBPF4Q96M43 638 aa30.95■■■□□ 2.55
CCDC28B-203ENST00000461819 USHBP1Q8N6Y0 703 aa30.94■■■□□ 2.54
CCDC28B-203ENST00000461819 MTHFSP49914 203 aa30.93■■■□□ 2.54
CCDC28B-203ENST00000461819 TNS2Q63HR2 1409 aa30.92■■■□□ 2.54
CCDC28B-203ENST00000461819 EIF4A2Q14240 407 aaKnown RBP30.92■■■□□ 2.54
CCDC28B-203ENST00000461819 FAM182BQ5T319 152 aa30.91■■■□□ 2.54
CCDC28B-203ENST00000461819 EXOC5O00471 708 aa30.89■■■□□ 2.54
CCDC28B-203ENST00000461819 UPF1Q92900 1129 aaKnown RBP eCLIP30.88■■■□□ 2.53
CCDC28B-203ENST00000461819 MEGF6O75095 1541 aa30.88■■■□□ 2.53
CCDC28B-203ENST00000461819 RAPGEF4Q8WZA2 1011 aa30.87■■■□□ 2.53
CCDC28B-203ENST00000461819 EYA1Q99502 592 aa30.86■■■□□ 2.53
CCDC28B-203ENST00000461819 OVOS2A0A0G2JMS6 1433 aa30.85■■■□□ 2.53
CCDC28B-203ENST00000461819 NCAPD2Q15021 1401 aa30.85■■■□□ 2.53
CCDC28B-203ENST00000461819 RGPD1P0DJD0 1748 aa30.84■■■□□ 2.53
CCDC28B-203ENST00000461819 PARD3Q8TEW0 1356 aa30.84■■■□□ 2.53
CCDC28B-203ENST00000461819 SHANK3Q9BYB0 1731 aa30.84■■■□□ 2.53
CCDC28B-203ENST00000461819 TATP17735 454 aaPredicted RBP30.83■■■□□ 2.53
CCDC28B-203ENST00000461819 PPP2R1AP30153 589 aa30.83■■■□□ 2.53
CCDC28B-203ENST00000461819 FAM196AQ6ZSG2 479 aa30.83■■■□□ 2.53
CCDC28B-203ENST00000461819 IGSF1Q8N6C5 1336 aa30.81■■■□□ 2.52
CCDC28B-203ENST00000461819 SBF2Q86WG5 1849 aa30.8■■■□□ 2.52
CCDC28B-203ENST00000461819 MARCH10Q8NA82 808 aaPredicted RBP30.8■■■□□ 2.52
CCDC28B-203ENST00000461819 PKD1L3Q7Z443 1732 aa30.79■■■□□ 2.52
CCDC28B-203ENST00000461819 COL3A1P02461 1466 aaPredicted RBP30.79■■■□□ 2.52
CCDC28B-203ENST00000461819 IL13P35225 146 aa30.79■■■□□ 2.52
CCDC28B-203ENST00000461819 CFAP53Q96M91 514 aa30.79■■■□□ 2.52
CCDC28B-203ENST00000461819 DIAPH1O60610 1272 aaKnown RBP30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms