RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 USP47Q96K76 1375 aa19.66■□□□□ 0.74
USP4-206ENST00000461553 DISP2A7MBM2 1401 aa19.66■□□□□ 0.74
USP4-206ENST00000461553 ST20-MTHFSA0A0A6YYL1 179 aa19.65■□□□□ 0.74
USP4-206ENST00000461553 PUS7Q96PZ0 661 aaKnown RBP19.65■□□□□ 0.74
USP4-206ENST00000461553 TERF2IPQ9NYB0 399 aa19.65■□□□□ 0.74
USP4-206ENST00000461553 USP31Q70CQ4 1352 aa19.65■□□□□ 0.74
USP4-206ENST00000461553 SLC24A1O60721 1099 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 PDE3BQ13370 1112 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 FAM196AQ6ZSG2 479 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 ARHGEF25Q86VW2 580 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 TESK2Q96S53 571 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 SBF2Q86WG5 1849 aa19.64■□□□□ 0.73
USP4-206ENST00000461553 PEAK1Q9H792 1746 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 RREB1Q92766 1687 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 WDR17Q8IZU2 1322 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 CLSPNQ9HAW4 1339 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 TOM1L2Q6ZVM7 507 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 SLC12A5Q9H2X9 1139 aa19.63■□□□□ 0.73
USP4-206ENST00000461553 KIF20BQ96Q89 1820 aa19.62■□□□□ 0.73
USP4-206ENST00000461553 FAM208AQ9UK61 1670 aaKnown RBP19.62■□□□□ 0.73
USP4-206ENST00000461553 OVOS2A0A0J9YW53 1432 aa19.61■□□□□ 0.73
USP4-206ENST00000461553 OVOS2Q6IE36 1432 aa19.61■□□□□ 0.73
USP4-206ENST00000461553 NME9Q86XW9 330 aa19.61■□□□□ 0.73
USP4-206ENST00000461553 OVOS2A0A0G2JMS6 1433 aa19.6■□□□□ 0.73
USP4-206ENST00000461553 CSB-PGBD3P0DP91 1061 aa19.6■□□□□ 0.73
USP4-206ENST00000461553 RGPD3A6NKT7 1758 aaPredicted RBP19.6■□□□□ 0.73
USP4-206ENST00000461553 RGPD4Q7Z3J3 1758 aa19.6■□□□□ 0.73
USP4-206ENST00000461553 NUP188Q5SRE5 1749 aa19.59■□□□□ 0.73
USP4-206ENST00000461553 MYOM1P52179 1685 aa19.59■□□□□ 0.73
USP4-206ENST00000461553 PCGF6Q9BYE7 350 aa19.59■□□□□ 0.73
USP4-206ENST00000461553 AXIN2Q9Y2T1 843 aa19.59■□□□□ 0.73
USP4-206ENST00000461553 LRP5O75197 1615 aa19.58■□□□□ 0.73
USP4-206ENST00000461553 TRIM37O94972 964 aa19.58■□□□□ 0.72
USP4-206ENST00000461553 EN1Q05925 392 aaPredicted RBP19.58■□□□□ 0.72
USP4-206ENST00000461553 ANKRD36BQ8N2N9 1353 aa19.57■□□□□ 0.72
USP4-206ENST00000461553 TMF1P82094 1093 aa19.57■□□□□ 0.72
USP4-206ENST00000461553 TIMELESSQ9UNS1 1208 aa19.57■□□□□ 0.72
USP4-206ENST00000461553 PARD3Q8TEW0 1356 aa19.57■□□□□ 0.72
USP4-206ENST00000461553 CCDC7Q96M83 1385 aa19.57■□□□□ 0.72
USP4-206ENST00000461553 C11orf95C9JLR9 678 aaPredicted RBP19.56■□□□□ 0.72
USP4-206ENST00000461553 CDCA7Q9BWT1 371 aaPredicted RBP19.56■□□□□ 0.72
USP4-206ENST00000461553 DDB1Q16531 1140 aa19.55■□□□□ 0.72
USP4-206ENST00000461553 CARD10Q9BWT7 1032 aa19.54■□□□□ 0.72
USP4-206ENST00000461553 ERBB3P21860 1342 aa19.53■□□□□ 0.72
USP4-206ENST00000461553 TNS2Q63HR2 1409 aa19.53■□□□□ 0.72
USP4-206ENST00000461553 APBA3O96018 575 aa19.52■□□□□ 0.72
USP4-206ENST00000461553 CDCA8Q53HL2 280 aa19.52■□□□□ 0.72
USP4-206ENST00000461553 EZH2Q15910 746 aaKnown RBP19.51■□□□□ 0.71
USP4-206ENST00000461553 COG3Q96JB2 828 aa19.5■□□□□ 0.71
USP4-206ENST00000461553 RGPD2P0DJD1 1756 aa19.49■□□□□ 0.71
USP4-206ENST00000461553 NHSQ6T4R5 1651 aa19.49■□□□□ 0.71
USP4-206ENST00000461553 KAT6BQ8WYB5 2073 aa19.49■□□□□ 0.71
USP4-206ENST00000461553 PSDA5PKW4 1024 aaPredicted RBP19.49■□□□□ 0.71
USP4-206ENST00000461553 CAMKK2Q96RR4 588 aa19.49■□□□□ 0.71
USP4-206ENST00000461553 BCL9O00512 1426 aa19.48■□□□□ 0.71
USP4-206ENST00000461553 ANKRD24Q8TF21 1146 aa19.47■□□□□ 0.71
USP4-206ENST00000461553 NLRP2Q9NX02 1062 aa19.47■□□□□ 0.71
USP4-206ENST00000461553 RTL1A6NKG5 1358 aa19.45■□□□□ 0.7
USP4-206ENST00000461553 CCER1Q8TC90 406 aaPredicted RBP19.45■□□□□ 0.7
USP4-206ENST00000461553 EXOC5O00471 708 aa19.44■□□□□ 0.7
USP4-206ENST00000461553 R3HDM1Q15032 1099 aaKnown RBP19.44■□□□□ 0.7
USP4-206ENST00000461553 MARCH10Q8NA82 808 aaPredicted RBP19.44■□□□□ 0.7
USP4-206ENST00000461553 ANKRD26Q9UPS8 1709 aa19.43■□□□□ 0.7
USP4-206ENST00000461553 IP6K1Q92551 441 aa19.43■□□□□ 0.7
USP4-206ENST00000461553 IL2RBP14784 551 aa19.42■□□□□ 0.7
USP4-206ENST00000461553 MAP3K19Q56UN5 1328 aa19.42■□□□□ 0.7
USP4-206ENST00000461553 SHANK3Q9BYB0 1731 aa19.42■□□□□ 0.7
USP4-206ENST00000461553 NSD3Q9BZ95 1437 aa19.42■□□□□ 0.7
USP4-206ENST00000461553 BTAF1O14981 1849 aa19.41■□□□□ 0.7
USP4-206ENST00000461553 AMPHP49418 695 aa19.41■□□□□ 0.7
USP4-206ENST00000461553 BCL11BQ9C0K0 894 aaPredicted RBP19.41■□□□□ 0.7
USP4-206ENST00000461553 SMG6Q86US8 1419 aaKnown RBP19.41■□□□□ 0.7
USP4-206ENST00000461553 HOXC9P31274 260 aa19.4■□□□□ 0.7
USP4-206ENST00000461553 LTV1Q96GA3 475 aaPredicted RBP19.4■□□□□ 0.7
USP4-206ENST00000461553 GGNBP2Q9H3C7 697 aa19.4■□□□□ 0.7
USP4-206ENST00000461553 NBPF14Q5TI25 921 aa19.39■□□□□ 0.69
USP4-206ENST00000461553 DOT1LQ8TEK3 1739 aa19.39■□□□□ 0.69
USP4-206ENST00000461553 FYB1O15117 783 aa19.38■□□□□ 0.69
USP4-206ENST00000461553 MAP2P11137 1827 aaKnown RBP19.37■□□□□ 0.69
USP4-206ENST00000461553 PLSCR1O15162 318 aa19.37■□□□□ 0.69
USP4-206ENST00000461553 RRS1Q15050 365 aaKnown RBP19.36■□□□□ 0.69
USP4-206ENST00000461553 FBLN1P23142 703 aa19.35■□□□□ 0.69
USP4-206ENST00000461553 CASZ1Q86V15 1759 aa19.34■□□□□ 0.69
USP4-206ENST00000461553 FLT4P35916 1363 aa19.34■□□□□ 0.69
USP4-206ENST00000461553 KIF24Q5T7B8 1368 aa19.34■□□□□ 0.69
USP4-206ENST00000461553 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
USP4-206ENST00000461553 PTF1AQ7RTS3 328 aa19.34■□□□□ 0.69
USP4-206ENST00000461553 POLR3GLQ9BT43 218 aa19.34■□□□□ 0.69
USP4-206ENST00000461553 MEGF6O75095 1541 aa19.33■□□□□ 0.68
USP4-206ENST00000461553 CGNL1Q0VF96 1302 aa19.31■□□□□ 0.68
USP4-206ENST00000461553 ACSBG1Q96GR2 724 aa19.31■□□□□ 0.68
USP4-206ENST00000461553 CARD14Q9BXL6 1004 aa19.31■□□□□ 0.68
USP4-206ENST00000461553 PAPPAQ13219 1627 aa19.31■□□□□ 0.68
USP4-206ENST00000461553 INSRP06213 1382 aa19.31■□□□□ 0.68
USP4-206ENST00000461553 HSPA5P11021 654 aaKnown RBP19.3■□□□□ 0.68
USP4-206ENST00000461553 PKD1L3Q7Z443 1732 aa19.29■□□□□ 0.68
USP4-206ENST00000461553 KCNQ2O43526 872 aa19.29■□□□□ 0.68
USP4-206ENST00000461553 ANO8Q9HCE9 1232 aaPredicted RBP19.28■□□□□ 0.68
USP4-206ENST00000461553 TXNRD1Q16881 649 aa19.27■□□□□ 0.68
USP4-206ENST00000461553 DDX54Q8TDD1 881 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms