RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 PEAK1Q9H792 1746 aa32.24■■■□□ 2.75
PTPN4-207ENST00000460162 TRIM37O94972 964 aa32.24■■■□□ 2.75
PTPN4-207ENST00000460162 RREB1Q92766 1687 aa32.24■■■□□ 2.75
PTPN4-207ENST00000460162 PARD3Q8TEW0 1356 aa32.23■■■□□ 2.75
PTPN4-207ENST00000460162 PUS7Q96PZ0 661 aaKnown RBP32.23■■■□□ 2.75
PTPN4-207ENST00000460162 EDC4Q6P2E9 1401 aaKnown RBP32.23■■■□□ 2.75
PTPN4-207ENST00000460162 TOM1L2Q6ZVM7 507 aa32.22■■■□□ 2.75
PTPN4-207ENST00000460162 HDGFL2Q7Z4V5 671 aaPredicted RBP32.21■■■□□ 2.75
PTPN4-207ENST00000460162 AXIN2Q9Y2T1 843 aa32.21■■■□□ 2.75
PTPN4-207ENST00000460162 LTN1O94822 1766 aa32.21■■■□□ 2.75
PTPN4-207ENST00000460162 OVOS2A0A0G2JMS6 1433 aa32.2■■■□□ 2.75
PTPN4-207ENST00000460162 OVOS2A0A0J9YW53 1432 aa32.2■■■□□ 2.75
PTPN4-207ENST00000460162 OVOS2Q6IE36 1432 aa32.2■■■□□ 2.75
PTPN4-207ENST00000460162 SOX12O15370 315 aa32.2■■■□□ 2.75
PTPN4-207ENST00000460162 TMC1Q8TDI8 760 aa32.2■■■□□ 2.75
PTPN4-207ENST00000460162 NINLQ9Y2I6 1382 aa32.19■■■□□ 2.74
PTPN4-207ENST00000460162 C11orf95C9JLR9 678 aaPredicted RBP32.19■■■□□ 2.74
PTPN4-207ENST00000460162 A0A1W2PP64 1363 aa32.19■■■□□ 2.74
PTPN4-207ENST00000460162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.18■■■□□ 2.74
PTPN4-207ENST00000460162 EZH2Q15910 746 aaKnown RBP32.16■■■□□ 2.74
PTPN4-207ENST00000460162 CAMKK2Q96RR4 588 aa32.16■■■□□ 2.74
PTPN4-207ENST00000460162 TESK2Q96S53 571 aa32.16■■■□□ 2.74
PTPN4-207ENST00000460162 TERF2IPQ9NYB0 399 aa32.16■■■□□ 2.74
PTPN4-207ENST00000460162 NUP188Q5SRE5 1749 aa32.16■■■□□ 2.74
PTPN4-207ENST00000460162 SBF2Q86WG5 1849 aa32.16■■■□□ 2.74
PTPN4-207ENST00000460162 RGPD3A6NKT7 1758 aaPredicted RBP32.15■■■□□ 2.74
PTPN4-207ENST00000460162 RGPD4Q7Z3J3 1758 aa32.15■■■□□ 2.74
PTPN4-207ENST00000460162 APBA3O96018 575 aa32.15■■■□□ 2.74
PTPN4-207ENST00000460162 SLC12A5Q9H2X9 1139 aa32.15■■■□□ 2.74
PTPN4-207ENST00000460162 PSDA5PKW4 1024 aaPredicted RBP32.14■■■□□ 2.74
PTPN4-207ENST00000460162 SLC24A1O60721 1099 aa32.14■■■□□ 2.74
PTPN4-207ENST00000460162 NME9Q86XW9 330 aa32.14■■■□□ 2.74
PTPN4-207ENST00000460162 CDCA7Q9BWT1 371 aaPredicted RBP32.14■■■□□ 2.74
PTPN4-207ENST00000460162 DDB1Q16531 1140 aa32.13■■■□□ 2.73
PTPN4-207ENST00000460162 ST20-MTHFSA0A0A6YYL1 179 aa32.12■■■□□ 2.73
PTPN4-207ENST00000460162 CARD10Q9BWT7 1032 aa32.12■■■□□ 2.73
PTPN4-207ENST00000460162 CCDC7Q96M83 1385 aa32.11■■■□□ 2.73
PTPN4-207ENST00000460162 CSB-PGBD3P0DP91 1061 aa32.11■■■□□ 2.73
PTPN4-207ENST00000460162 BCL9O00512 1426 aa32.07■■■□□ 2.72
PTPN4-207ENST00000460162 USP47Q96K76 1375 aa32.07■■■□□ 2.72
PTPN4-207ENST00000460162 ERBB3P21860 1342 aa32.06■■■□□ 2.72
PTPN4-207ENST00000460162 R3HDM1Q15032 1099 aaKnown RBP32.05■■■□□ 2.72
PTPN4-207ENST00000460162 TNS2Q63HR2 1409 aa32.05■■■□□ 2.72
PTPN4-207ENST00000460162 FAM208AQ9UK61 1670 aaKnown RBP32.04■■■□□ 2.72
PTPN4-207ENST00000460162 ANKRD36BQ8N2N9 1353 aa32.02■■■□□ 2.72
PTPN4-207ENST00000460162 MARCH10Q8NA82 808 aaPredicted RBP31.99■■■□□ 2.71
PTPN4-207ENST00000460162 TMF1P82094 1093 aa31.97■■■□□ 2.71
PTPN4-207ENST00000460162 CLSPNQ9HAW4 1339 aa31.97■■■□□ 2.71
PTPN4-207ENST00000460162 BCL11BQ9C0K0 894 aaPredicted RBP31.95■■■□□ 2.71
PTPN4-207ENST00000460162 TIMELESSQ9UNS1 1208 aa31.95■■■□□ 2.71
PTPN4-207ENST00000460162 EXOC5O00471 708 aa31.94■■■□□ 2.7
PTPN4-207ENST00000460162 NBPF14Q5TI25 921 aa31.94■■■□□ 2.7
PTPN4-207ENST00000460162 ANKRD24Q8TF21 1146 aa31.94■■■□□ 2.7
PTPN4-207ENST00000460162 NHSQ6T4R5 1651 aa31.94■■■□□ 2.7
PTPN4-207ENST00000460162 PLSCR1O15162 318 aa31.93■■■□□ 2.7
PTPN4-207ENST00000460162 NLRP2Q9NX02 1062 aa31.93■■■□□ 2.7
PTPN4-207ENST00000460162 COG3Q96JB2 828 aa31.92■■■□□ 2.7
PTPN4-207ENST00000460162 KIF20BQ96Q89 1820 aa31.91■■■□□ 2.7
PTPN4-207ENST00000460162 MYOM1P52179 1685 aa31.91■■■□□ 2.7
PTPN4-207ENST00000460162 IL2RBP14784 551 aa31.89■■■□□ 2.7
PTPN4-207ENST00000460162 CDCA8Q53HL2 280 aa31.89■■■□□ 2.7
PTPN4-207ENST00000460162 IP6K1Q92551 441 aa31.88■■■□□ 2.69
PTPN4-207ENST00000460162 PTF1AQ7RTS3 328 aa31.86■■■□□ 2.69
PTPN4-207ENST00000460162 RTL1A6NKG5 1358 aa31.85■■■□□ 2.69
PTPN4-207ENST00000460162 MAP3K19Q56UN5 1328 aa31.84■■■□□ 2.69
PTPN4-207ENST00000460162 HOXC9P31274 260 aa31.8■■■□□ 2.68
PTPN4-207ENST00000460162 RGPD2P0DJD1 1756 aa31.8■■■□□ 2.68
PTPN4-207ENST00000460162 CASZ1Q86V15 1759 aa31.8■■■□□ 2.68
PTPN4-207ENST00000460162 PCGF6Q9BYE7 350 aa31.79■■■□□ 2.68
PTPN4-207ENST00000460162 BTAF1O14981 1849 aa31.79■■■□□ 2.68
PTPN4-207ENST00000460162 FYB1O15117 783 aa31.78■■■□□ 2.68
PTPN4-207ENST00000460162 AMPHP49418 695 aa31.77■■■□□ 2.68
PTPN4-207ENST00000460162 LTV1Q96GA3 475 aaPredicted RBP31.76■■■□□ 2.67
PTPN4-207ENST00000460162 ANO8Q9HCE9 1232 aaPredicted RBP31.76■■■□□ 2.67
PTPN4-207ENST00000460162 GGNBP2Q9H3C7 697 aa31.75■■■□□ 2.67
PTPN4-207ENST00000460162 SHANK3Q9BYB0 1731 aa31.75■■■□□ 2.67
PTPN4-207ENST00000460162 PROM2Q8N271 834 aa31.74■■■□□ 2.67
PTPN4-207ENST00000460162 KCNQ2O43526 872 aa31.73■■■□□ 2.67
PTPN4-207ENST00000460162 TXNRD1Q16881 649 aa31.73■■■□□ 2.67
PTPN4-207ENST00000460162 SMG6Q86US8 1419 aaKnown RBP31.73■■■□□ 2.67
PTPN4-207ENST00000460162 FBLN1P23142 703 aa31.72■■■□□ 2.67
PTPN4-207ENST00000460162 ACSBG1Q96GR2 724 aa31.71■■■□□ 2.67
PTPN4-207ENST00000460162 NSD3Q9BZ95 1437 aa31.71■■■□□ 2.67
PTPN4-207ENST00000460162 PAPPAQ13219 1627 aa31.71■■■□□ 2.67
PTPN4-207ENST00000460162 KIF24Q5T7B8 1368 aa31.7■■■□□ 2.67
PTPN4-207ENST00000460162 RRS1Q15050 365 aaKnown RBP31.7■■■□□ 2.67
PTPN4-207ENST00000460162 DOT1LQ8TEK3 1739 aa31.69■■■□□ 2.66
PTPN4-207ENST00000460162 SPON1Q9HCB6 807 aa31.69■■■□□ 2.66
PTPN4-207ENST00000460162 MEGF6O75095 1541 aa31.69■■■□□ 2.66
PTPN4-207ENST00000460162 ANKRD26Q9UPS8 1709 aa31.69■■■□□ 2.66
PTPN4-207ENST00000460162 KAT6BQ8WYB5 2073 aa31.67■■■□□ 2.66
PTPN4-207ENST00000460162 FLT4P35916 1363 aa31.67■■■□□ 2.66
PTPN4-207ENST00000460162 STK32BQ9NY57 414 aa31.65■■■□□ 2.66
PTPN4-207ENST00000460162 INSRP06213 1382 aa31.65■■■□□ 2.66
PTPN4-207ENST00000460162 CARD14Q9BXL6 1004 aa31.64■■■□□ 2.66
PTPN4-207ENST00000460162 DDX54Q8TDD1 881 aaKnown RBP31.62■■■□□ 2.65
PTPN4-207ENST00000460162 CGNL1Q0VF96 1302 aa31.61■■■□□ 2.65
PTPN4-207ENST00000460162 SLC15A2Q16348 729 aa31.61■■■□□ 2.65
PTPN4-207ENST00000460162 NBPF6Q5VWK0 638 aa31.6■■■□□ 2.65
PTPN4-207ENST00000460162 NBPF4Q96M43 638 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms