RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CD163L1Q9NR16 1453 aa26■■□□□ 1.75
HOXD3-204ENST00000459979 TTC21BQ7Z4L5 1316 aa26■■□□□ 1.75
HOXD3-204ENST00000459979 THRAP3Q9Y2W1 955 aaKnown RBP26■■□□□ 1.75
HOXD3-204ENST00000459979 MON2Q7Z3U7 1717 aa26■■□□□ 1.75
HOXD3-204ENST00000459979 LRRC37A3O60309 1634 aa25.99■■□□□ 1.75
HOXD3-204ENST00000459979 CRB1P82279 1406 aa25.99■■□□□ 1.75
HOXD3-204ENST00000459979 KTN1Q86UP2 1357 aaKnown RBP25.99■■□□□ 1.75
HOXD3-204ENST00000459979 TTC21AQ8NDW8 1320 aa25.99■■□□□ 1.75
HOXD3-204ENST00000459979 SBF2Q86WG5 1849 aa25.99■■□□□ 1.75
HOXD3-204ENST00000459979 WNK3Q9BYP7 1800 aa25.99■■□□□ 1.75
HOXD3-204ENST00000459979 PARD3Q8TEW0 1356 aa25.98■■□□□ 1.75
HOXD3-204ENST00000459979 NINLQ9Y2I6 1382 aa25.98■■□□□ 1.75
HOXD3-204ENST00000459979 PEAK1Q9H792 1746 aa25.98■■□□□ 1.75
HOXD3-204ENST00000459979 SLC12A5Q9H2X9 1139 aa25.97■■□□□ 1.75
HOXD3-204ENST00000459979 AATKQ6ZMQ8 1374 aa25.96■■□□□ 1.75
HOXD3-204ENST00000459979 TMF1P82094 1093 aa25.96■■□□□ 1.75
HOXD3-204ENST00000459979 TMC1Q8TDI8 760 aa25.96■■□□□ 1.75
HOXD3-204ENST00000459979 HDGFL2Q7Z4V5 671 aaPredicted RBP25.94■■□□□ 1.74
HOXD3-204ENST00000459979 TERF2IPQ9NYB0 399 aa25.94■■□□□ 1.74
HOXD3-204ENST00000459979 SOX12O15370 315 aa25.93■■□□□ 1.74
HOXD3-204ENST00000459979 TOM1L2Q6ZVM7 507 aa25.93■■□□□ 1.74
HOXD3-204ENST00000459979 AXIN2Q9Y2T1 843 aa25.92■■□□□ 1.74
HOXD3-204ENST00000459979 OVOS2A0A0G2JMS6 1433 aa25.91■■□□□ 1.74
HOXD3-204ENST00000459979 OVOS2A0A0J9YW53 1432 aa25.91■■□□□ 1.74
HOXD3-204ENST00000459979 OVOS2Q6IE36 1432 aa25.91■■□□□ 1.74
HOXD3-204ENST00000459979 CDCA8Q53HL2 280 aa25.91■■□□□ 1.74
HOXD3-204ENST00000459979 A0A1W2PP64 1363 aa25.91■■□□□ 1.74
HOXD3-204ENST00000459979 EDC4Q6P2E9 1401 aaKnown RBP25.9■■□□□ 1.74
HOXD3-204ENST00000459979 USP31Q70CQ4 1352 aa25.9■■□□□ 1.74
HOXD3-204ENST00000459979 NBPF14Q5TI25 921 aa25.89■■□□□ 1.74
HOXD3-204ENST00000459979 USP54Q70EL1 1684 aa25.89■■□□□ 1.73
HOXD3-204ENST00000459979 DDB1Q16531 1140 aa25.88■■□□□ 1.73
HOXD3-204ENST00000459979 KCNH5Q8NCM2 988 aa25.88■■□□□ 1.73
HOXD3-204ENST00000459979 WDR17Q8IZU2 1322 aa25.88■■□□□ 1.73
HOXD3-204ENST00000459979 PTF1AQ7RTS3 328 aa25.87■■□□□ 1.73
HOXD3-204ENST00000459979 RGPD3A6NKT7 1758 aaPredicted RBP25.87■■□□□ 1.73
HOXD3-204ENST00000459979 RGPD4Q7Z3J3 1758 aa25.87■■□□□ 1.73
HOXD3-204ENST00000459979 ARHGEF25Q86VW2 580 aa25.86■■□□□ 1.73
HOXD3-204ENST00000459979 NFAT5O94916 1531 aa25.85■■□□□ 1.73
HOXD3-204ENST00000459979 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.85■■□□□ 1.73
HOXD3-204ENST00000459979 ANKRD36BQ8N2N9 1353 aa25.84■■□□□ 1.73
HOXD3-204ENST00000459979 EIF4G2P78344 907 aaKnown RBP eCLIP25.83■■□□□ 1.73
HOXD3-204ENST00000459979 CSB-PGBD3P0DP91 1061 aa25.82■■□□□ 1.72
HOXD3-204ENST00000459979 NME9Q86XW9 330 aa25.82■■□□□ 1.72
HOXD3-204ENST00000459979 MARCH10Q8NA82 808 aaPredicted RBP25.82■■□□□ 1.72
HOXD3-204ENST00000459979 C11orf95C9JLR9 678 aaPredicted RBP25.81■■□□□ 1.72
HOXD3-204ENST00000459979 ANO8Q9HCE9 1232 aaPredicted RBP25.79■■□□□ 1.72
HOXD3-204ENST00000459979 LTN1O94822 1766 aa25.79■■□□□ 1.72
HOXD3-204ENST00000459979 CARD10Q9BWT7 1032 aa25.78■■□□□ 1.72
HOXD3-204ENST00000459979 PLSCR1O15162 318 aa25.77■■□□□ 1.72
HOXD3-204ENST00000459979 HSPA5P11021 654 aaKnown RBP25.77■■□□□ 1.72
HOXD3-204ENST00000459979 BCL11BQ9C0K0 894 aaPredicted RBP25.77■■□□□ 1.72
HOXD3-204ENST00000459979 CASZ1Q86V15 1759 aa25.77■■□□□ 1.72
HOXD3-204ENST00000459979 SPON1Q9HCB6 807 aa25.76■■□□□ 1.71
HOXD3-204ENST00000459979 ABCC6O95255 1503 aa25.76■■□□□ 1.71
HOXD3-204ENST00000459979 KCNQ2O43526 872 aa25.75■■□□□ 1.71
HOXD3-204ENST00000459979 CDCA7Q9BWT1 371 aaPredicted RBP25.75■■□□□ 1.71
HOXD3-204ENST00000459979 MYOM1P52179 1685 aa25.74■■□□□ 1.71
HOXD3-204ENST00000459979 PPP1R1BQ9UD71 204 aaPredicted RBP25.74■■□□□ 1.71
HOXD3-204ENST00000459979 PROM2Q8N271 834 aa25.73■■□□□ 1.71
HOXD3-204ENST00000459979 PDGFDQ9GZP0 370 aaPredicted RBP25.72■■□□□ 1.71
HOXD3-204ENST00000459979 BCL9O00512 1426 aa25.71■■□□□ 1.71
HOXD3-204ENST00000459979 CCDC7Q96M83 1385 aa25.71■■□□□ 1.71
HOXD3-204ENST00000459979 EXOC5O00471 708 aa25.71■■□□□ 1.71
HOXD3-204ENST00000459979 TNS2Q63HR2 1409 aa25.71■■□□□ 1.71
HOXD3-204ENST00000459979 KAT6BQ8WYB5 2073 aa25.68■■□□□ 1.7
HOXD3-204ENST00000459979 NHSQ6T4R5 1651 aa25.68■■□□□ 1.7
HOXD3-204ENST00000459979 FYB1O15117 783 aa25.68■■□□□ 1.7
HOXD3-204ENST00000459979 COG3Q96JB2 828 aa25.68■■□□□ 1.7
HOXD3-204ENST00000459979 CARD14Q9BXL6 1004 aa25.67■■□□□ 1.7
HOXD3-204ENST00000459979 ERBB3P21860 1342 aa25.66■■□□□ 1.7
HOXD3-204ENST00000459979 NLRP2Q9NX02 1062 aa25.66■■□□□ 1.7
HOXD3-204ENST00000459979 TXNRD1Q16881 649 aa25.65■■□□□ 1.7
HOXD3-204ENST00000459979 ACSBG1Q96GR2 724 aa25.65■■□□□ 1.7
HOXD3-204ENST00000459979 ZBTB7AO95365 584 aa25.64■■□□□ 1.7
HOXD3-204ENST00000459979 BTAF1O14981 1849 aa25.63■■□□□ 1.69
HOXD3-204ENST00000459979 YY1P25490 414 aa25.62■■□□□ 1.69
HOXD3-204ENST00000459979 ANKRD24Q8TF21 1146 aa25.62■■□□□ 1.69
HOXD3-204ENST00000459979 KIF20BQ96Q89 1820 aa25.62■■□□□ 1.69
HOXD3-204ENST00000459979 GGNBP2Q9H3C7 697 aa25.61■■□□□ 1.69
HOXD3-204ENST00000459979 STK32BQ9NY57 414 aa25.61■■□□□ 1.69
HOXD3-204ENST00000459979 IP6K1Q92551 441 aa25.6■■□□□ 1.69
HOXD3-204ENST00000459979 ATF5Q9Y2D1 282 aaPredicted RBP25.6■■□□□ 1.69
HOXD3-204ENST00000459979 NSD3Q9BZ95 1437 aa25.6■■□□□ 1.69
HOXD3-204ENST00000459979 IL2RBP14784 551 aa25.59■■□□□ 1.69
HOXD3-204ENST00000459979 SLC15A2Q16348 729 aa25.58■■□□□ 1.69
HOXD3-204ENST00000459979 MAP3K19Q56UN5 1328 aa25.57■■□□□ 1.68
HOXD3-204ENST00000459979 PTGER2P43116 358 aa25.56■■□□□ 1.68
HOXD3-204ENST00000459979 POLR3GLQ9BT43 218 aa25.56■■□□□ 1.68
HOXD3-204ENST00000459979 RGPD2P0DJD1 1756 aa25.56■■□□□ 1.68
HOXD3-204ENST00000459979 PAPPAQ13219 1627 aa25.55■■□□□ 1.68
HOXD3-204ENST00000459979 LTV1Q96GA3 475 aaPredicted RBP25.55■■□□□ 1.68
HOXD3-204ENST00000459979 CGNL1Q0VF96 1302 aa25.55■■□□□ 1.68
HOXD3-204ENST00000459979 FAM208AQ9UK61 1670 aaKnown RBP25.54■■□□□ 1.68
HOXD3-204ENST00000459979 DCAF8L1A6NGE4 600 aa25.53■■□□□ 1.68
HOXD3-204ENST00000459979 FBLN1P23142 703 aa25.53■■□□□ 1.68
HOXD3-204ENST00000459979 RTL1A6NKG5 1358 aa25.53■■□□□ 1.68
HOXD3-204ENST00000459979 HOXC9P31274 260 aa25.52■■□□□ 1.68
HOXD3-204ENST00000459979 PANK3Q9H999 370 aa25.51■■□□□ 1.67
HOXD3-204ENST00000459979 KIF24Q5T7B8 1368 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms