RNA–Protein interactions for RNA: ENST00000458283.5

PCCA-208, Transcript of propionyl-CoA carboxylase subunit alpha, human

TSL 3

Gene PCCA, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCCA-208	ENST00000458283		A0A0G2JS52	829 aa		13.94	□□□□□ -0.18
PCCA-208	ENST00000458283	MYT1	Q01538	1121 aa		13.94	□□□□□ -0.18
PCCA-208	ENST00000458283	SF3B2	Q13435	895 aa	Known RBP	13.94	□□□□□ -0.18
PCCA-208	ENST00000458283	NRAP	Q86VF7	1730 aa		13.94	□□□□□ -0.18
PCCA-208	ENST00000458283		U3KPZ7	1027 aa	Predicted RBP	13.94	□□□□□ -0.18
PCCA-208	ENST00000458283	SSH2	Q76I76	1423 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	SOX12	O15370	315 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	VPS72	Q15906	364 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	SEPT12	Q8IYM1	358 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	ALS2	Q96Q42	1657 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	NPC1L1	Q9UHC9	1359 aa		13.93	□□□□□ -0.18
PCCA-208	ENST00000458283	OVOS2	A0A0J9YW53	1432 aa		13.92	□□□□□ -0.18
PCCA-208	ENST00000458283	OVOS2	Q6IE36	1432 aa		13.92	□□□□□ -0.18
PCCA-208	ENST00000458283	COL14A1	Q05707	1796 aa	Known RBP	13.92	□□□□□ -0.18
PCCA-208	ENST00000458283	FYB1	O15117	783 aa		13.92	□□□□□ -0.18
PCCA-208	ENST00000458283	C1QBP	Q07021	282 aa	Known RBP	13.92	□□□□□ -0.18
PCCA-208	ENST00000458283	TTC21A	Q8NDW8	1320 aa		13.91	□□□□□ -0.18
PCCA-208	ENST00000458283	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.91	□□□□□ -0.18
PCCA-208	ENST00000458283	RALBP1	Q15311	655 aa		13.91	□□□□□ -0.18
PCCA-208	ENST00000458283	COG3	Q96JB2	828 aa		13.91	□□□□□ -0.18
PCCA-208	ENST00000458283	KRT27	Q7Z3Y8	459 aa		13.9	□□□□□ -0.18
PCCA-208	ENST00000458283	DEFB132	Q7Z7B7	95 aa		13.89	□□□□□ -0.19
PCCA-208	ENST00000458283	ABTB2	Q8N961	1025 aa		13.89	□□□□□ -0.19
PCCA-208	ENST00000458283	CRYBG1	Q9Y4K1	1723 aa		13.89	□□□□□ -0.19
PCCA-208	ENST00000458283	USP54	Q70EL1	1684 aa		13.88	□□□□□ -0.19
PCCA-208	ENST00000458283	BRD4	O60885	1362 aa	Predicted RBP	13.88	□□□□□ -0.19
PCCA-208	ENST00000458283	FAM83G	A6ND36	823 aa		13.88	□□□□□ -0.19
PCCA-208	ENST00000458283	PPP2R1A	P30153	589 aa		13.88	□□□□□ -0.19
PCCA-208	ENST00000458283	NLRP6	P59044	892 aa		13.88	□□□□□ -0.19
PCCA-208	ENST00000458283	RGPD1	P0DJD0	1748 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	ZBTB7C	A1YPR0	619 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	FBLN1	P23142	703 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	FAM98C	Q17RN3	349 aa	Known RBP	13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	CCDC184	Q52MB2	194 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	MRS2	Q9HD23	443 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	BTG4	Q9NY30	223 aa		13.87	□□□□□ -0.19
PCCA-208	ENST00000458283	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.86	□□□□□ -0.19
PCCA-208	ENST00000458283	USP31	Q70CQ4	1352 aa		13.85	□□□□□ -0.19
PCCA-208	ENST00000458283	ONECUT3	O60422	494 aa	Predicted RBP	13.85	□□□□□ -0.19
PCCA-208	ENST00000458283	NLRP13	Q86W25	1043 aa		13.85	□□□□□ -0.19
PCCA-208	ENST00000458283	LRP5	O75197	1615 aa		13.85	□□□□□ -0.19
PCCA-208	ENST00000458283	PPM1G	O15355	546 aa	Predicted RBP	13.84	□□□□□ -0.19
PCCA-208	ENST00000458283	BAG6	P46379	1132 aa		13.84	□□□□□ -0.19
PCCA-208	ENST00000458283	RRS1	Q15050	365 aa	Known RBP	13.84	□□□□□ -0.19
PCCA-208	ENST00000458283	PRDM11	Q9NQV5	511 aa		13.84	□□□□□ -0.19
PCCA-208	ENST00000458283	SLIT3	O75094	1523 aa		13.84	□□□□□ -0.19
PCCA-208	ENST00000458283	CCER2	I3L3R5	266 aa		13.83	□□□□□ -0.2
PCCA-208	ENST00000458283	EMILIN1	Q9Y6C2	1016 aa		13.83	□□□□□ -0.2
PCCA-208	ENST00000458283	NFAT5	O94916	1531 aa		13.83	□□□□□ -0.2
PCCA-208	ENST00000458283	THSD7A	Q9UPZ6	1657 aa		13.82	□□□□□ -0.2
PCCA-208	ENST00000458283	PEAK1	Q9H792	1746 aa		13.82	□□□□□ -0.2
PCCA-208	ENST00000458283	USP19	O94966	1318 aa		13.82	□□□□□ -0.2
PCCA-208	ENST00000458283	TNS1	Q9HBL0	1735 aa	Known RBP	13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	LTN1	O94822	1766 aa		13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	MAP2	P11137	1827 aa	Known RBP	13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	MTHFS	P49914	203 aa		13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	SPATA31A5	Q5VU36	1347 aa		13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	SPATA31A7	Q8IWB4	1347 aa		13.81	□□□□□ -0.2
PCCA-208	ENST00000458283	AATK	Q6ZMQ8	1374 aa		13.8	□□□□□ -0.2
PCCA-208	ENST00000458283	KIAA0232	Q92628	1395 aa		13.8	□□□□□ -0.2
PCCA-208	ENST00000458283	SMG6	Q86US8	1419 aa	Known RBP	13.8	□□□□□ -0.2
PCCA-208	ENST00000458283	PSD	A5PKW4	1024 aa	Predicted RBP	13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	CFAP53	Q96M91	514 aa		13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	YTHDC1	Q96MU7	727 aa	Known RBP	13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	POLK	Q9UBT6	870 aa		13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	MAP3K19	Q56UN5	1328 aa		13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	COL3A1	P02461	1466 aa	Predicted RBP	13.79	□□□□□ -0.2
PCCA-208	ENST00000458283	FAM182B	Q5T319	152 aa		13.78	□□□□□ -0.2
PCCA-208	ENST00000458283	FAM9B	Q8IZU0	186 aa		13.78	□□□□□ -0.2
PCCA-208	ENST00000458283	STRN4	Q9NRL3	753 aa		13.78	□□□□□ -0.2
PCCA-208	ENST00000458283	AMPH	P49418	695 aa		13.77	□□□□□ -0.21
PCCA-208	ENST00000458283	ZC3H6	P61129	1189 aa	Known RBP	13.77	□□□□□ -0.21
PCCA-208	ENST00000458283	CHRNA2	Q15822	529 aa		13.77	□□□□□ -0.21
PCCA-208	ENST00000458283	FOXD4L1	Q9NU39	408 aa		13.77	□□□□□ -0.21
PCCA-208	ENST00000458283	GC	P02774	474 aa		13.76	□□□□□ -0.21
PCCA-208	ENST00000458283	EN1	Q05925	392 aa	Predicted RBP	13.76	□□□□□ -0.21
PCCA-208	ENST00000458283	KCNH5	Q8NCM2	988 aa		13.76	□□□□□ -0.21
PCCA-208	ENST00000458283	FLT4	P35916	1363 aa		13.75	□□□□□ -0.21
PCCA-208	ENST00000458283	SPATA31A1	Q5TZJ5	1347 aa		13.75	□□□□□ -0.21
PCCA-208	ENST00000458283	ZBTB22	O15209	634 aa		13.75	□□□□□ -0.21
PCCA-208	ENST00000458283	WDR43	Q15061	677 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PCCA-208	ENST00000458283	DISP2	A7MBM2	1401 aa		13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	RTL1	A6NKG5	1358 aa		13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	U2SURP	O15042	1029 aa	Known RBP	13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	EVA1C	P58658	441 aa		13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	LTV1	Q96GA3	475 aa	Predicted RBP	13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	USP35	Q9P2H5	1018 aa		13.74	□□□□□ -0.21
PCCA-208	ENST00000458283	SENP3-EIF4A1	A0A087X0R7	540 aa		13.73	□□□□□ -0.21
PCCA-208	ENST00000458283	HOXC9	P31274	260 aa		13.72	□□□□□ -0.21
PCCA-208	ENST00000458283	R3HDM1	Q15032	1099 aa	Known RBP	13.72	□□□□□ -0.21
PCCA-208	ENST00000458283	HSP90AB2P	Q58FF8	381 aa		13.72	□□□□□ -0.21
PCCA-208	ENST00000458283	FAM196A	Q6ZSG2	479 aa		13.72	□□□□□ -0.21
PCCA-208	ENST00000458283	LMO7	Q8WWI1	1683 aa		13.72	□□□□□ -0.21
PCCA-208	ENST00000458283	DIAPH1	O60610	1272 aa	Known RBP	13.71	□□□□□ -0.21
PCCA-208	ENST00000458283	TRIM37	O94972	964 aa		13.71	□□□□□ -0.21
PCCA-208	ENST00000458283	RGPD5	Q99666	1765 aa		13.71	□□□□□ -0.22
PCCA-208	ENST00000458283	RREB1	Q92766	1687 aa		13.7	□□□□□ -0.22
PCCA-208	ENST00000458283	CAMTA1	Q9Y6Y1	1673 aa		13.7	□□□□□ -0.22
PCCA-208	ENST00000458283	PDE3B	Q13370	1112 aa		13.7	□□□□□ -0.22
PCCA-208	ENST00000458283	EIF4A2	Q14240	407 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 171.5 ms