RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 BARGINQ6ZT62 677 aa24.19■■□□□ 1.46
USP39-208ENST00000455732 BLMP54132 1417 aaPredicted RBP24.18■■□□□ 1.46
USP39-208ENST00000455732 ZBTB7CA1YPR0 619 aa24.18■■□□□ 1.46
USP39-208ENST00000455732 USP35Q9P2H5 1018 aa24.18■■□□□ 1.46
USP39-208ENST00000455732 LTN1O94822 1766 aa24.18■■□□□ 1.46
USP39-208ENST00000455732 AXIN2Q9Y2T1 843 aa24.17■■□□□ 1.46
USP39-208ENST00000455732 CRB1P82279 1406 aa24.17■■□□□ 1.46
USP39-208ENST00000455732 SOX12O15370 315 aa24.16■■□□□ 1.46
USP39-208ENST00000455732 TCP11L2Q8N4U5 519 aa24.16■■□□□ 1.46
USP39-208ENST00000455732 ABCC6O95255 1503 aa24.15■■□□□ 1.46
USP39-208ENST00000455732 OVOS2A0A0J9YW53 1432 aa24.15■■□□□ 1.46
USP39-208ENST00000455732 OVOS2Q6IE36 1432 aa24.15■■□□□ 1.46
USP39-208ENST00000455732 PARP4Q9UKK3 1724 aaKnown RBP24.15■■□□□ 1.46
USP39-208ENST00000455732 THRAP3Q9Y2W1 955 aaKnown RBP24.14■■□□□ 1.45
USP39-208ENST00000455732 WNK3Q9BYP7 1800 aa24.14■■□□□ 1.45
USP39-208ENST00000455732 MYOM1P52179 1685 aa24.14■■□□□ 1.45
USP39-208ENST00000455732 WDR17Q8IZU2 1322 aa24.11■■□□□ 1.45
USP39-208ENST00000455732 RGPD1P0DJD0 1748 aa24.11■■□□□ 1.45
USP39-208ENST00000455732 FAM182BQ5T319 152 aa24.11■■□□□ 1.45
USP39-208ENST00000455732 SF3B2Q13435 895 aaKnown RBP24.1■■□□□ 1.45
USP39-208ENST00000455732 TNS1Q9HBL0 1735 aaKnown RBP24.08■■□□□ 1.45
USP39-208ENST00000455732 TOM1L2Q6ZVM7 507 aa24.07■■□□□ 1.44
USP39-208ENST00000455732 LRRC37A3O60309 1634 aa24.06■■□□□ 1.44
USP39-208ENST00000455732 DEFB132Q7Z7B7 95 aa24.06■■□□□ 1.44
USP39-208ENST00000455732 KIF20BQ96Q89 1820 aa24.05■■□□□ 1.44
USP39-208ENST00000455732 COG3Q96JB2 828 aa24.04■■□□□ 1.44
USP39-208ENST00000455732 PDE3BQ13370 1112 aa24.03■■□□□ 1.44
USP39-208ENST00000455732 FAM196AQ6ZSG2 479 aa24.03■■□□□ 1.44
USP39-208ENST00000455732 CARD10Q9BWT7 1032 aa24.03■■□□□ 1.44
USP39-208ENST00000455732 NSD3Q9BZ95 1437 aa24.02■■□□□ 1.44
USP39-208ENST00000455732 PEAK1Q9H792 1746 aa24.02■■□□□ 1.44
USP39-208ENST00000455732 FYB1O15117 783 aa24.02■■□□□ 1.44
USP39-208ENST00000455732 CARD14Q9BXL6 1004 aa24.02■■□□□ 1.44
USP39-208ENST00000455732 ERBB3P21860 1342 aa24.02■■□□□ 1.44
USP39-208ENST00000455732 CSB-PGBD3P0DP91 1061 aa24.01■■□□□ 1.43
USP39-208ENST00000455732 SBF2Q86WG5 1849 aa24■■□□□ 1.43
USP39-208ENST00000455732 DISP2A7MBM2 1401 aa24■■□□□ 1.43
USP39-208ENST00000455732 C11orf95C9JLR9 678 aaPredicted RBP23.99■■□□□ 1.43
USP39-208ENST00000455732 POLR3GLQ9BT43 218 aa23.99■■□□□ 1.43
USP39-208ENST00000455732 CCDC7Q96M83 1385 aa23.99■■□□□ 1.43
USP39-208ENST00000455732 BAG6P46379 1132 aa23.98■■□□□ 1.43
USP39-208ENST00000455732 FAM208AQ9UK61 1670 aaKnown RBP23.98■■□□□ 1.43
USP39-208ENST00000455732 DDB1Q16531 1140 aa23.97■■□□□ 1.43
USP39-208ENST00000455732 IP6K1Q92551 441 aa23.97■■□□□ 1.43
USP39-208ENST00000455732 CDCA7Q9BWT1 371 aaPredicted RBP23.97■■□□□ 1.43
USP39-208ENST00000455732 GGNBP2Q9H3C7 697 aa23.97■■□□□ 1.43
USP39-208ENST00000455732 TRIM37O94972 964 aa23.96■■□□□ 1.43
USP39-208ENST00000455732 FBLN1P23142 703 aa23.96■■□□□ 1.43
USP39-208ENST00000455732 CGNL1Q0VF96 1302 aa23.95■■□□□ 1.42
USP39-208ENST00000455732 MAP3K19Q56UN5 1328 aa23.95■■□□□ 1.42
USP39-208ENST00000455732 ANKRD24Q8TF21 1146 aa23.95■■□□□ 1.42
USP39-208ENST00000455732 KIF7Q2M1P5 1343 aa23.94■■□□□ 1.42
USP39-208ENST00000455732 OVOS2A0A0G2JMS6 1433 aa23.93■■□□□ 1.42
USP39-208ENST00000455732 RGPD2P0DJD1 1756 aa23.93■■□□□ 1.42
USP39-208ENST00000455732 EN1Q05925 392 aaPredicted RBP23.93■■□□□ 1.42
USP39-208ENST00000455732 RTL1A6NKG5 1358 aa23.92■■□□□ 1.42
USP39-208ENST00000455732 NLRP2Q9NX02 1062 aa23.92■■□□□ 1.42
USP39-208ENST00000455732 HOXC9P31274 260 aa23.91■■□□□ 1.42
USP39-208ENST00000455732 PANK3Q9H999 370 aa23.91■■□□□ 1.42
USP39-208ENST00000455732 MARCH10Q8NA82 808 aaPredicted RBP23.9■■□□□ 1.42
USP39-208ENST00000455732 RRS1Q15050 365 aaKnown RBP23.89■■□□□ 1.41
USP39-208ENST00000455732 BCL9O00512 1426 aa23.89■■□□□ 1.41
USP39-208ENST00000455732 TNS2Q63HR2 1409 aa23.89■■□□□ 1.41
USP39-208ENST00000455732 AMPHP49418 695 aa23.88■■□□□ 1.41
USP39-208ENST00000455732 CAMKK2Q96RR4 588 aa23.88■■□□□ 1.41
USP39-208ENST00000455732 RREB1Q92766 1687 aa23.88■■□□□ 1.41
USP39-208ENST00000455732 KIF24Q5T7B8 1368 aa23.88■■□□□ 1.41
USP39-208ENST00000455732 LRP5O75197 1615 aa23.88■■□□□ 1.41
USP39-208ENST00000455732 ANKRD26Q9UPS8 1709 aa23.87■■□□□ 1.41
USP39-208ENST00000455732 MAP2P11137 1827 aaKnown RBP23.87■■□□□ 1.41
USP39-208ENST00000455732 EXOC5O00471 708 aa23.87■■□□□ 1.41
USP39-208ENST00000455732 APBA3O96018 575 aa23.87■■□□□ 1.41
USP39-208ENST00000455732 NSD2O96028 1365 aa23.87■■□□□ 1.41
USP39-208ENST00000455732 IL2RBP14784 551 aa23.86■■□□□ 1.41
USP39-208ENST00000455732 EZH2Q15910 746 aaKnown RBP23.86■■□□□ 1.41
USP39-208ENST00000455732 LTV1Q96GA3 475 aaPredicted RBP23.85■■□□□ 1.41
USP39-208ENST00000455732 PARD3Q8TEW0 1356 aa23.85■■□□□ 1.41
USP39-208ENST00000455732 RGPD3A6NKT7 1758 aaPredicted RBP23.85■■□□□ 1.41
USP39-208ENST00000455732 RGPD4Q7Z3J3 1758 aa23.85■■□□□ 1.41
USP39-208ENST00000455732 NUP188Q5SRE5 1749 aa23.83■■□□□ 1.41
USP39-208ENST00000455732 FLT4P35916 1363 aa23.82■■□□□ 1.4
USP39-208ENST00000455732 KAT6BQ8WYB5 2073 aa23.82■■□□□ 1.4
USP39-208ENST00000455732 WASHC2AQ641Q2 1341 aa23.82■■□□□ 1.4
USP39-208ENST00000455732 PSDA5PKW4 1024 aaPredicted RBP23.81■■□□□ 1.4
USP39-208ENST00000455732 INSRP06213 1382 aa23.8■■□□□ 1.4
USP39-208ENST00000455732 PTF1AQ7RTS3 328 aa23.8■■□□□ 1.4
USP39-208ENST00000455732 BCL11BQ9C0K0 894 aaPredicted RBP23.8■■□□□ 1.4
USP39-208ENST00000455732 SHANK3Q9BYB0 1731 aa23.79■■□□□ 1.4
USP39-208ENST00000455732 KNSTRNQ9Y448 316 aa23.79■■□□□ 1.4
USP39-208ENST00000455732 NHSQ6T4R5 1651 aa23.79■■□□□ 1.4
USP39-208ENST00000455732 HSP90AB2PQ58FF8 381 aa23.78■■□□□ 1.4
USP39-208ENST00000455732 SMG6Q86US8 1419 aaKnown RBP23.77■■□□□ 1.4
USP39-208ENST00000455732 NBPF6Q5VWK0 638 aa23.77■■□□□ 1.4
USP39-208ENST00000455732 NBPF4Q96M43 638 aa23.77■■□□□ 1.4
USP39-208ENST00000455732 EMILIN1Q9Y6C2 1016 aa23.77■■□□□ 1.4
USP39-208ENST00000455732 PLSCR1O15162 318 aa23.76■■□□□ 1.39
USP39-208ENST00000455732 AMER1Q5JTC6 1135 aaPredicted RBP23.75■■□□□ 1.39
USP39-208ENST00000455732 MEGF6O75095 1541 aa23.74■■□□□ 1.39
USP39-208ENST00000455732 PER1O15534 1290 aaPredicted RBP23.74■■□□□ 1.39
USP39-208ENST00000455732 POLKQ9UBT6 870 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms