RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ARHGEF25Q86VW2 580 aa29.77■■■□□ 2.36
HMGB3-205ENST00000455596 NME9Q86XW9 330 aa29.77■■■□□ 2.36
HMGB3-205ENST00000455596 TCP11L2Q8N4U5 519 aa29.77■■■□□ 2.36
HMGB3-205ENST00000455596 CRB1P82279 1406 aa29.77■■■□□ 2.36
HMGB3-205ENST00000455596 WNK3Q9BYP7 1800 aa29.76■■■□□ 2.35
HMGB3-205ENST00000455596 ZRANB1Q9UGI0 708 aa29.76■■■□□ 2.35
HMGB3-205ENST00000455596 THRAP3Q9Y2W1 955 aaKnown RBP29.76■■■□□ 2.35
HMGB3-205ENST00000455596 PARP4Q9UKK3 1724 aaKnown RBP29.76■■■□□ 2.35
HMGB3-205ENST00000455596 ABCC6O95255 1503 aa29.75■■■□□ 2.35
HMGB3-205ENST00000455596 AXIN2Q9Y2T1 843 aa29.72■■■□□ 2.35
HMGB3-205ENST00000455596 FAM182BQ5T319 152 aa29.71■■■□□ 2.35
HMGB3-205ENST00000455596 ANKRD36BQ8N2N9 1353 aa29.7■■■□□ 2.35
HMGB3-205ENST00000455596 CDCA8Q53HL2 280 aa29.7■■■□□ 2.35
HMGB3-205ENST00000455596 WDR17Q8IZU2 1322 aa29.7■■■□□ 2.34
HMGB3-205ENST00000455596 TNS1Q9HBL0 1735 aaKnown RBP29.69■■■□□ 2.34
HMGB3-205ENST00000455596 TOM1L2Q6ZVM7 507 aa29.69■■■□□ 2.34
HMGB3-205ENST00000455596 OVOS2A0A0J9YW53 1432 aa29.69■■■□□ 2.34
HMGB3-205ENST00000455596 OVOS2Q6IE36 1432 aa29.69■■■□□ 2.34
HMGB3-205ENST00000455596 MYOM1P52179 1685 aa29.67■■■□□ 2.34
HMGB3-205ENST00000455596 PDE3BQ13370 1112 aa29.66■■■□□ 2.34
HMGB3-205ENST00000455596 DEFB132Q7Z7B7 95 aa29.66■■■□□ 2.34
HMGB3-205ENST00000455596 LRRC37A3O60309 1634 aa29.66■■■□□ 2.34
HMGB3-205ENST00000455596 KIF20BQ96Q89 1820 aa29.64■■■□□ 2.34
HMGB3-205ENST00000455596 CSB-PGBD3P0DP91 1061 aa29.64■■■□□ 2.34
HMGB3-205ENST00000455596 FAM196AQ6ZSG2 479 aa29.64■■■□□ 2.34
HMGB3-205ENST00000455596 BAG6P46379 1132 aa29.63■■■□□ 2.33
HMGB3-205ENST00000455596 COG3Q96JB2 828 aa29.6■■■□□ 2.33
HMGB3-205ENST00000455596 CARD10Q9BWT7 1032 aa29.59■■■□□ 2.33
HMGB3-205ENST00000455596 SBF2Q86WG5 1849 aa29.57■■■□□ 2.32
HMGB3-205ENST00000455596 CCDC7Q96M83 1385 aa29.56■■■□□ 2.32
HMGB3-205ENST00000455596 CDCA7Q9BWT1 371 aaPredicted RBP29.56■■■□□ 2.32
HMGB3-205ENST00000455596 PEAK1Q9H792 1746 aa29.56■■■□□ 2.32
HMGB3-205ENST00000455596 FAM208AQ9UK61 1670 aaKnown RBP29.56■■■□□ 2.32
HMGB3-205ENST00000455596 DISP2A7MBM2 1401 aa29.55■■■□□ 2.32
HMGB3-205ENST00000455596 ERBB3P21860 1342 aa29.55■■■□□ 2.32
HMGB3-205ENST00000455596 TRIM37O94972 964 aa29.55■■■□□ 2.32
HMGB3-205ENST00000455596 DDB1Q16531 1140 aa29.55■■■□□ 2.32
HMGB3-205ENST00000455596 EIF4G2P78344 907 aaKnown RBP eCLIP29.53■■■□□ 2.32
HMGB3-205ENST00000455596 C11orf95C9JLR9 678 aaPredicted RBP29.52■■■□□ 2.32
HMGB3-205ENST00000455596 OVOS2A0A0G2JMS6 1433 aa29.52■■■□□ 2.32
HMGB3-205ENST00000455596 EN1Q05925 392 aaPredicted RBP29.51■■■□□ 2.31
HMGB3-205ENST00000455596 FYB1O15117 783 aa29.5■■■□□ 2.31
HMGB3-205ENST00000455596 ANKRD24Q8TF21 1146 aa29.5■■■□□ 2.31
HMGB3-205ENST00000455596 IP6K1Q92551 441 aa29.49■■■□□ 2.31
HMGB3-205ENST00000455596 GGNBP2Q9H3C7 697 aa29.49■■■□□ 2.31
HMGB3-205ENST00000455596 NLRP2Q9NX02 1062 aa29.49■■■□□ 2.31
HMGB3-205ENST00000455596 HSPA5P11021 654 aaKnown RBP29.47■■■□□ 2.31
HMGB3-205ENST00000455596 MAP3K19Q56UN5 1328 aa29.46■■■□□ 2.31
HMGB3-205ENST00000455596 APBA3O96018 575 aa29.46■■■□□ 2.31
HMGB3-205ENST00000455596 RGPD2P0DJD1 1756 aa29.46■■■□□ 2.31
HMGB3-205ENST00000455596 NSD3Q9BZ95 1437 aa29.45■■■□□ 2.31
HMGB3-205ENST00000455596 RREB1Q92766 1687 aa29.45■■■□□ 2.31
HMGB3-205ENST00000455596 EXOC5O00471 708 aa29.44■■■□□ 2.3
HMGB3-205ENST00000455596 AMPHP49418 695 aa29.44■■■□□ 2.3
HMGB3-205ENST00000455596 POLR3GLQ9BT43 218 aa29.44■■■□□ 2.3
HMGB3-205ENST00000455596 CARD14Q9BXL6 1004 aa29.44■■■□□ 2.3
HMGB3-205ENST00000455596 FBLN1P23142 703 aa29.43■■■□□ 2.3
HMGB3-205ENST00000455596 EZH2Q15910 746 aaKnown RBP29.43■■■□□ 2.3
HMGB3-205ENST00000455596 TNS2Q63HR2 1409 aa29.43■■■□□ 2.3
HMGB3-205ENST00000455596 HOXC9P31274 260 aa29.42■■■□□ 2.3
HMGB3-205ENST00000455596 MARCH10Q8NA82 808 aaPredicted RBP29.42■■■□□ 2.3
HMGB3-205ENST00000455596 RTL1A6NKG5 1358 aa29.41■■■□□ 2.3
HMGB3-205ENST00000455596 PARD3Q8TEW0 1356 aa29.41■■■□□ 2.3
HMGB3-205ENST00000455596 LTV1Q96GA3 475 aaPredicted RBP29.41■■■□□ 2.3
HMGB3-205ENST00000455596 CAMKK2Q96RR4 588 aa29.41■■■□□ 2.3
HMGB3-205ENST00000455596 RGPD3A6NKT7 1758 aaPredicted RBP29.4■■■□□ 2.3
HMGB3-205ENST00000455596 RGPD4Q7Z3J3 1758 aa29.4■■■□□ 2.3
HMGB3-205ENST00000455596 IL2RBP14784 551 aa29.4■■■□□ 2.3
HMGB3-205ENST00000455596 NUP188Q5SRE5 1749 aa29.4■■■□□ 2.3
HMGB3-205ENST00000455596 BCL9O00512 1426 aa29.39■■■□□ 2.3
HMGB3-205ENST00000455596 RRS1Q15050 365 aaKnown RBP29.39■■■□□ 2.3
HMGB3-205ENST00000455596 ANKRD26Q9UPS8 1709 aa29.39■■■□□ 2.3
HMGB3-205ENST00000455596 MAP2P11137 1827 aaKnown RBP29.37■■■□□ 2.29
HMGB3-205ENST00000455596 CGNL1Q0VF96 1302 aa29.33■■■□□ 2.29
HMGB3-205ENST00000455596 NHSQ6T4R5 1651 aa29.32■■■□□ 2.28
HMGB3-205ENST00000455596 BCL11BQ9C0K0 894 aaPredicted RBP29.32■■■□□ 2.28
HMGB3-205ENST00000455596 SMG6Q86US8 1419 aaKnown RBP29.31■■■□□ 2.28
HMGB3-205ENST00000455596 KIF24Q5T7B8 1368 aa29.31■■■□□ 2.28
HMGB3-205ENST00000455596 PSDA5PKW4 1024 aaPredicted RBP29.31■■■□□ 2.28
HMGB3-205ENST00000455596 KAT6BQ8WYB5 2073 aa29.31■■■□□ 2.28
HMGB3-205ENST00000455596 FLT4P35916 1363 aa29.29■■■□□ 2.28
HMGB3-205ENST00000455596 INSRP06213 1382 aa29.28■■■□□ 2.28
HMGB3-205ENST00000455596 PLSCR1O15162 318 aa29.27■■■□□ 2.28
HMGB3-205ENST00000455596 SHANK3Q9BYB0 1731 aa29.27■■■□□ 2.28
HMGB3-205ENST00000455596 LRP5O75197 1615 aa29.27■■■□□ 2.28
HMGB3-205ENST00000455596 R3HDM1Q15032 1099 aaKnown RBP29.26■■■□□ 2.27
HMGB3-205ENST00000455596 PTF1AQ7RTS3 328 aa29.26■■■□□ 2.27
HMGB3-205ENST00000455596 HSP90AB2PQ58FF8 381 aa29.25■■■□□ 2.27
HMGB3-205ENST00000455596 PANK3Q9H999 370 aa29.25■■■□□ 2.27
HMGB3-205ENST00000455596 BTAF1O14981 1849 aa29.23■■■□□ 2.27
HMGB3-205ENST00000455596 NBPF14Q5TI25 921 aa29.23■■■□□ 2.27
HMGB3-205ENST00000455596 NBPF6Q5VWK0 638 aa29.23■■■□□ 2.27
HMGB3-205ENST00000455596 NBPF4Q96M43 638 aa29.23■■■□□ 2.27
HMGB3-205ENST00000455596 EMILIN1Q9Y6C2 1016 aa29.23■■■□□ 2.27
HMGB3-205ENST00000455596 MEGF6O75095 1541 aa29.21■■■□□ 2.27
HMGB3-205ENST00000455596 ACSBG1Q96GR2 724 aa29.2■■■□□ 2.26
HMGB3-205ENST00000455596 PPM1GO15355 546 aaPredicted RBP29.19■■■□□ 2.26
HMGB3-205ENST00000455596 KCNQ2O43526 872 aa29.19■■■□□ 2.26
HMGB3-205ENST00000455596 USHBP1Q8N6Y0 703 aa29.19■■■□□ 2.26
HMGB3-205ENST00000455596 DDX54Q8TDD1 881 aaKnown RBP29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms