RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 FBLN1P23142 703 aa15.68■□□□□ 0.1
SCN9A-204ENST00000452182 TNNT2P45379 298 aaPredicted RBP15.68■□□□□ 0.1
SCN9A-204ENST00000452182 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
SCN9A-204ENST00000452182 POLKQ9UBT6 870 aa15.68■□□□□ 0.1
SCN9A-204ENST00000452182 LMO7Q8WWI1 1683 aa15.68■□□□□ 0.1
SCN9A-204ENST00000452182 ANP32CO43423 234 aa15.68■□□□□ 0.1
SCN9A-204ENST00000452182 RRS1Q15050 365 aaKnown RBP15.68■□□□□ 0.1
SCN9A-204ENST00000452182 PRDM11Q9NQV5 511 aa15.68■□□□□ 0.1
SCN9A-204ENST00000452182 PEAK1Q9H792 1746 aa15.67■□□□□ 0.1
SCN9A-204ENST00000452182 ADAMTS2O95450 1211 aa15.67■□□□□ 0.1
SCN9A-204ENST00000452182 PPP2R1AP30153 589 aa15.67■□□□□ 0.1
SCN9A-204ENST00000452182 MYBBP1AQ9BQG0 1328 aaKnown RBP15.67■□□□□ 0.1
SCN9A-204ENST00000452182 FAM83GA6ND36 823 aa15.66■□□□□ 0.1
SCN9A-204ENST00000452182 CDK12Q9NYV4 1490 aaPredicted RBP15.66■□□□□ 0.1
SCN9A-204ENST00000452182 NWD2Q9ULI1 1742 aa15.66■□□□□ 0.1
SCN9A-204ENST00000452182 FLT4P35916 1363 aa15.66■□□□□ 0.1
SCN9A-204ENST00000452182 BLMP54132 1417 aaPredicted RBP15.66■□□□□ 0.1
SCN9A-204ENST00000452182 PLCH1Q4KWH8 1693 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 IP6K1Q92551 441 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 EMILIN1Q9Y6C2 1016 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 SLIT2O94813 1529 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 AMPHP49418 695 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 MTHFSP49914 203 aa15.65■□□□□ 0.1
SCN9A-204ENST00000452182 INSRP06213 1382 aa15.64■□□□□ 0.09
SCN9A-204ENST00000452182 RGPD5Q99666 1765 aa15.64■□□□□ 0.09
SCN9A-204ENST00000452182 HOXC9P31274 260 aa15.64■□□□□ 0.09
SCN9A-204ENST00000452182 CAMTA1Q9Y6Y1 1673 aa15.64■□□□□ 0.09
SCN9A-204ENST00000452182 CHRNA2Q15822 529 aa15.63■□□□□ 0.09
SCN9A-204ENST00000452182 MEX3CQ5U5Q3 659 aaKnown RBP15.62■□□□□ 0.09
SCN9A-204ENST00000452182 FNBP4Q8N3X1 1017 aaPredicted RBP15.62■□□□□ 0.09
SCN9A-204ENST00000452182 AXIN2Q9Y2T1 843 aa15.62■□□□□ 0.09
SCN9A-204ENST00000452182 NRAPQ86VF7 1730 aa15.62■□□□□ 0.09
SCN9A-204ENST00000452182 PPM1GO15355 546 aaPredicted RBP15.61■□□□□ 0.09
SCN9A-204ENST00000452182 SAMD1Q6SPF0 538 aaPredicted RBP15.61■□□□□ 0.09
SCN9A-204ENST00000452182 NGLY1Q96IV0 654 aa15.61■□□□□ 0.09
SCN9A-204ENST00000452182 C8orf37Q96NL8 207 aa15.61■□□□□ 0.09
SCN9A-204ENST00000452182 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.61■□□□□ 0.09
SCN9A-204ENST00000452182 ZBTB7CA1YPR0 619 aa15.61■□□□□ 0.09
SCN9A-204ENST00000452182 COL5A2P05997 1499 aaPredicted RBP15.61■□□□□ 0.09
SCN9A-204ENST00000452182 HSP90AB2PQ58FF8 381 aa15.61■□□□□ 0.09
SCN9A-204ENST00000452182 BTG4Q9NY30 223 aa15.61■□□□□ 0.09
SCN9A-204ENST00000452182 U3KPZ7 1027 aaPredicted RBP15.61■□□□□ 0.09
SCN9A-204ENST00000452182 FAM208AQ9UK61 1670 aaKnown RBP15.6■□□□□ 0.09
SCN9A-204ENST00000452182 COL3A1P02461 1466 aaPredicted RBP15.6■□□□□ 0.09
SCN9A-204ENST00000452182 BCL9LQ86UU0 1499 aa15.59■□□□□ 0.09
SCN9A-204ENST00000452182 ERBB3P21860 1342 aa15.59■□□□□ 0.09
SCN9A-204ENST00000452182 CFAP53Q96M91 514 aa15.59■□□□□ 0.09
SCN9A-204ENST00000452182 WDR17Q8IZU2 1322 aa15.57■□□□□ 0.08
SCN9A-204ENST00000452182 UNC5CLQ8IV45 518 aa15.57■□□□□ 0.08
SCN9A-204ENST00000452182 ANKRD24Q8TF21 1146 aa15.57■□□□□ 0.08
SCN9A-204ENST00000452182 AFF2P51816 1311 aa15.56■□□□□ 0.08
SCN9A-204ENST00000452182 DIAPH1O60610 1272 aaKnown RBP15.55■□□□□ 0.08
SCN9A-204ENST00000452182 IL13P35225 146 aa15.55■□□□□ 0.08
SCN9A-204ENST00000452182 EVA1CP58658 441 aa15.55■□□□□ 0.08
SCN9A-204ENST00000452182 EIF4A2Q14240 407 aaKnown RBP15.55■□□□□ 0.08
SCN9A-204ENST00000452182 USP21Q9UK80 565 aa15.55■□□□□ 0.08
SCN9A-204ENST00000452182 RGPD1P0DJD0 1748 aa15.55■□□□□ 0.08
SCN9A-204ENST00000452182 CRB1P82279 1406 aa15.54■□□□□ 0.08
SCN9A-204ENST00000452182 RGPD2P0DJD1 1756 aa15.53■□□□□ 0.08
SCN9A-204ENST00000452182 NCAPD2Q15021 1401 aa15.53■□□□□ 0.08
SCN9A-204ENST00000452182 CCER2I3L3R5 266 aa15.53■□□□□ 0.08
SCN9A-204ENST00000452182 VPS72Q15906 364 aa15.53■□□□□ 0.08
SCN9A-204ENST00000452182 ZNF772Q68DY9 489 aaPredicted RBP15.53■□□□□ 0.08
SCN9A-204ENST00000452182 LTV1Q96GA3 475 aaPredicted RBP15.53■□□□□ 0.08
SCN9A-204ENST00000452182 STRN4Q9NRL3 753 aa15.53■□□□□ 0.08
SCN9A-204ENST00000452182 CSB-PGBD3P0DP91 1061 aa15.52■□□□□ 0.08
SCN9A-204ENST00000452182 LARP1Q6PKG0 1096 aaKnown RBP15.52■□□□□ 0.08
SCN9A-204ENST00000452182 MIER1Q8N108 512 aa15.52■□□□□ 0.08
SCN9A-204ENST00000452182 NUDCQ9Y266 331 aa15.52■□□□□ 0.08
SCN9A-204ENST00000452182 IGSF1Q8N6C5 1336 aa15.52■□□□□ 0.07
SCN9A-204ENST00000452182 ATRNO75882 1429 aa15.51■□□□□ 0.07
SCN9A-204ENST00000452182 TOM1L2Q6ZVM7 507 aa15.51■□□□□ 0.07
SCN9A-204ENST00000452182 CARD10Q9BWT7 1032 aa15.51■□□□□ 0.07
SCN9A-204ENST00000452182 TRPC5Q9UL62 973 aaPredicted RBP15.51■□□□□ 0.07
SCN9A-204ENST00000452182 NBPF6Q5VWK0 638 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 NBPF4Q96M43 638 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 EYA1Q99502 592 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 SPATA31A1Q5TZJ5 1347 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 SPATA31A5Q5VU36 1347 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 SPATA31A7Q8IWB4 1347 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 CCDC184Q52MB2 194 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 MRS2Q9HD23 443 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 NLRP2Q9NX02 1062 aa15.5■□□□□ 0.07
SCN9A-204ENST00000452182 KDRP35968 1356 aa15.49■□□□□ 0.07
SCN9A-204ENST00000452182 THRAP3Q9Y2W1 955 aaKnown RBP15.49■□□□□ 0.07
SCN9A-204ENST00000452182 QTRT2Q9H974 415 aaKnown RBP15.48■□□□□ 0.07
SCN9A-204ENST00000452182 RGS17Q9UGC6 210 aaPredicted RBP15.48■□□□□ 0.07
SCN9A-204ENST00000452182 PLEKHG2Q9H7P9 1386 aa15.48■□□□□ 0.07
SCN9A-204ENST00000452182 WNK3Q9BYP7 1800 aa15.47■□□□□ 0.07
SCN9A-204ENST00000452182 GLI3P10071 1580 aa15.47■□□□□ 0.07
SCN9A-204ENST00000452182 GJD4Q96KN9 370 aaPredicted RBP15.47■□□□□ 0.07
SCN9A-204ENST00000452182 ATF5Q9Y2D1 282 aaPredicted RBP15.47■□□□□ 0.07
SCN9A-204ENST00000452182 U2SURPO15042 1029 aaKnown RBP15.46■□□□□ 0.07
SCN9A-204ENST00000452182 BARGINQ6ZT62 677 aa15.46■□□□□ 0.07
SCN9A-204ENST00000452182 TCP11L2Q8N4U5 519 aa15.46■□□□□ 0.07
SCN9A-204ENST00000452182 PNISRQ8TF01 805 aaKnown RBP15.46■□□□□ 0.07
SCN9A-204ENST00000452182 U2AF1L5P0DN76 240 aaPredicted RBP15.45■□□□□ 0.06
SCN9A-204ENST00000452182 U2AF1Q01081 240 aaKnown RBP eCLIP15.45■□□□□ 0.06
SCN9A-204ENST00000452182 SULT6B1Q6IMI4 303 aa15.45■□□□□ 0.06
SCN9A-204ENST00000452182 CDCA7Q9BWT1 371 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms