RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 AXIN2Q9Y2T1 843 aa17.62■□□□□ 0.41
CPSF4-208ENST00000452047 DISP2A7MBM2 1401 aa17.62■□□□□ 0.41
CPSF4-208ENST00000452047 LTN1O94822 1766 aa17.61■□□□□ 0.41
CPSF4-208ENST00000452047 HDGFL2Q7Z4V5 671 aaPredicted RBP17.61■□□□□ 0.41
CPSF4-208ENST00000452047 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.61■□□□□ 0.41
CPSF4-208ENST00000452047 CLSPNQ9HAW4 1339 aa17.61■□□□□ 0.41
CPSF4-208ENST00000452047 USP47Q96K76 1375 aa17.61■□□□□ 0.41
CPSF4-208ENST00000452047 NINLQ9Y2I6 1382 aa17.61■□□□□ 0.41
CPSF4-208ENST00000452047 SOX12O15370 315 aa17.6■□□□□ 0.41
CPSF4-208ENST00000452047 NME9Q86XW9 330 aa17.6■□□□□ 0.41
CPSF4-208ENST00000452047 WDR17Q8IZU2 1322 aa17.6■□□□□ 0.41
CPSF4-208ENST00000452047 PEAK1Q9H792 1746 aa17.59■□□□□ 0.41
CPSF4-208ENST00000452047 OVOS2A0A0J9YW53 1432 aa17.59■□□□□ 0.41
CPSF4-208ENST00000452047 OVOS2Q6IE36 1432 aa17.59■□□□□ 0.41
CPSF4-208ENST00000452047 BAG6P46379 1132 aa17.59■□□□□ 0.41
CPSF4-208ENST00000452047 TERF2IPQ9NYB0 399 aa17.59■□□□□ 0.41
CPSF4-208ENST00000452047 SLC24A1O60721 1099 aa17.58■□□□□ 0.4
CPSF4-208ENST00000452047 FAM196AQ6ZSG2 479 aa17.58■□□□□ 0.4
CPSF4-208ENST00000452047 PDE3BQ13370 1112 aa17.57■□□□□ 0.4
CPSF4-208ENST00000452047 TOM1L2Q6ZVM7 507 aa17.57■□□□□ 0.4
CPSF4-208ENST00000452047 TIMELESSQ9UNS1 1208 aa17.57■□□□□ 0.4
CPSF4-208ENST00000452047 PCGF6Q9BYE7 350 aa17.56■□□□□ 0.4
CPSF4-208ENST00000452047 ANKRD36BQ8N2N9 1353 aa17.54■□□□□ 0.4
CPSF4-208ENST00000452047 SBF2Q86WG5 1849 aa17.54■□□□□ 0.4
CPSF4-208ENST00000452047 TRIM37O94972 964 aa17.54■□□□□ 0.4
CPSF4-208ENST00000452047 EN1Q05925 392 aaPredicted RBP17.54■□□□□ 0.4
CPSF4-208ENST00000452047 RREB1Q92766 1687 aa17.54■□□□□ 0.4
CPSF4-208ENST00000452047 MYOM1P52179 1685 aa17.53■□□□□ 0.4
CPSF4-208ENST00000452047 CARD10Q9BWT7 1032 aa17.53■□□□□ 0.4
CPSF4-208ENST00000452047 OVOS2A0A0G2JMS6 1433 aa17.53■□□□□ 0.4
CPSF4-208ENST00000452047 TMF1P82094 1093 aa17.52■□□□□ 0.4
CPSF4-208ENST00000452047 ERBB3P21860 1342 aa17.51■□□□□ 0.39
CPSF4-208ENST00000452047 CCDC7Q96M83 1385 aa17.51■□□□□ 0.39
CPSF4-208ENST00000452047 CSB-PGBD3P0DP91 1061 aa17.5■□□□□ 0.39
CPSF4-208ENST00000452047 DDB1Q16531 1140 aa17.5■□□□□ 0.39
CPSF4-208ENST00000452047 CAMKK2Q96RR4 588 aa17.5■□□□□ 0.39
CPSF4-208ENST00000452047 CDCA7Q9BWT1 371 aaPredicted RBP17.5■□□□□ 0.39
CPSF4-208ENST00000452047 PARD3Q8TEW0 1356 aa17.5■□□□□ 0.39
CPSF4-208ENST00000452047 NUP188Q5SRE5 1749 aa17.5■□□□□ 0.39
CPSF4-208ENST00000452047 FAM208AQ9UK61 1670 aaKnown RBP17.49■□□□□ 0.39
CPSF4-208ENST00000452047 RGPD3A6NKT7 1758 aaPredicted RBP17.49■□□□□ 0.39
CPSF4-208ENST00000452047 RGPD4Q7Z3J3 1758 aa17.49■□□□□ 0.39
CPSF4-208ENST00000452047 EZH2Q15910 746 aaKnown RBP17.49■□□□□ 0.39
CPSF4-208ENST00000452047 BCL9O00512 1426 aa17.48■□□□□ 0.39
CPSF4-208ENST00000452047 LRP5O75197 1615 aa17.48■□□□□ 0.39
CPSF4-208ENST00000452047 C11orf95C9JLR9 678 aaPredicted RBP17.48■□□□□ 0.39
CPSF4-208ENST00000452047 APBA3O96018 575 aa17.48■□□□□ 0.39
CPSF4-208ENST00000452047 KIF20BQ96Q89 1820 aa17.48■□□□□ 0.39
CPSF4-208ENST00000452047 TNS2Q63HR2 1409 aa17.47■□□□□ 0.39
CPSF4-208ENST00000452047 PSDA5PKW4 1024 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-208ENST00000452047 CDCA8Q53HL2 280 aa17.45■□□□□ 0.38
CPSF4-208ENST00000452047 MARCH10Q8NA82 808 aaPredicted RBP17.45■□□□□ 0.38
CPSF4-208ENST00000452047 ANKRD24Q8TF21 1146 aa17.45■□□□□ 0.38
CPSF4-208ENST00000452047 COG3Q96JB2 828 aa17.45■□□□□ 0.38
CPSF4-208ENST00000452047 IP6K1Q92551 441 aa17.44■□□□□ 0.38
CPSF4-208ENST00000452047 MAP3K19Q56UN5 1328 aa17.44■□□□□ 0.38
CPSF4-208ENST00000452047 FYB1O15117 783 aa17.43■□□□□ 0.38
CPSF4-208ENST00000452047 NLRP2Q9NX02 1062 aa17.43■□□□□ 0.38
CPSF4-208ENST00000452047 RGPD2P0DJD1 1756 aa17.42■□□□□ 0.38
CPSF4-208ENST00000452047 EXOC5O00471 708 aa17.41■□□□□ 0.38
CPSF4-208ENST00000452047 FBLN1P23142 703 aa17.41■□□□□ 0.38
CPSF4-208ENST00000452047 R3HDM1Q15032 1099 aaKnown RBP17.41■□□□□ 0.38
CPSF4-208ENST00000452047 PTF1AQ7RTS3 328 aa17.41■□□□□ 0.38
CPSF4-208ENST00000452047 CCER1Q8TC90 406 aaPredicted RBP17.41■□□□□ 0.38
CPSF4-208ENST00000452047 NHSQ6T4R5 1651 aa17.41■□□□□ 0.38
CPSF4-208ENST00000452047 RTL1A6NKG5 1358 aa17.4■□□□□ 0.38
CPSF4-208ENST00000452047 HOXC9P31274 260 aa17.4■□□□□ 0.38
CPSF4-208ENST00000452047 BCL11BQ9C0K0 894 aaPredicted RBP17.4■□□□□ 0.38
CPSF4-208ENST00000452047 GGNBP2Q9H3C7 697 aa17.4■□□□□ 0.38
CPSF4-208ENST00000452047 IL2RBP14784 551 aa17.39■□□□□ 0.37
CPSF4-208ENST00000452047 CARD14Q9BXL6 1004 aa17.39■□□□□ 0.37
CPSF4-208ENST00000452047 NSD3Q9BZ95 1437 aa17.38■□□□□ 0.37
CPSF4-208ENST00000452047 PLSCR1O15162 318 aa17.38■□□□□ 0.37
CPSF4-208ENST00000452047 AMPHP49418 695 aa17.37■□□□□ 0.37
CPSF4-208ENST00000452047 SHANK3Q9BYB0 1731 aa17.37■□□□□ 0.37
CPSF4-208ENST00000452047 ANKRD26Q9UPS8 1709 aa17.37■□□□□ 0.37
CPSF4-208ENST00000452047 RRS1Q15050 365 aaKnown RBP17.36■□□□□ 0.37
CPSF4-208ENST00000452047 LTV1Q96GA3 475 aaPredicted RBP17.36■□□□□ 0.37
CPSF4-208ENST00000452047 BTAF1O14981 1849 aa17.34■□□□□ 0.37
CPSF4-208ENST00000452047 MEGF6O75095 1541 aa17.33■□□□□ 0.37
CPSF4-208ENST00000452047 KIF24Q5T7B8 1368 aa17.33■□□□□ 0.36
CPSF4-208ENST00000452047 KCNQ2O43526 872 aa17.33■□□□□ 0.36
CPSF4-208ENST00000452047 HSPA5P11021 654 aaKnown RBP17.33■□□□□ 0.36
CPSF4-208ENST00000452047 EIF4G2P78344 907 aaKnown RBP eCLIP17.33■□□□□ 0.36
CPSF4-208ENST00000452047 FLT4P35916 1363 aa17.32■□□□□ 0.36
CPSF4-208ENST00000452047 NBPF14Q5TI25 921 aa17.32■□□□□ 0.36
CPSF4-208ENST00000452047 PROM2Q8N271 834 aa17.32■□□□□ 0.36
CPSF4-208ENST00000452047 INSRP06213 1382 aa17.31■□□□□ 0.36
CPSF4-208ENST00000452047 SMG6Q86US8 1419 aaKnown RBP17.3■□□□□ 0.36
CPSF4-208ENST00000452047 CASZ1Q86V15 1759 aa17.3■□□□□ 0.36
CPSF4-208ENST00000452047 ACSBG1Q96GR2 724 aa17.3■□□□□ 0.36
CPSF4-208ENST00000452047 ANO8Q9HCE9 1232 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-208ENST00000452047 MAP2P11137 1827 aaKnown RBP17.3■□□□□ 0.36
CPSF4-208ENST00000452047 DOT1LQ8TEK3 1739 aa17.3■□□□□ 0.36
CPSF4-208ENST00000452047 CGNL1Q0VF96 1302 aa17.29■□□□□ 0.36
CPSF4-208ENST00000452047 HSP90AB2PQ58FF8 381 aa17.29■□□□□ 0.36
CPSF4-208ENST00000452047 NBPF6Q5VWK0 638 aa17.29■□□□□ 0.36
CPSF4-208ENST00000452047 NBPF4Q96M43 638 aa17.29■□□□□ 0.36
CPSF4-208ENST00000452047 PAPPAQ13219 1627 aa17.29■□□□□ 0.36
CPSF4-208ENST00000452047 TXNRD1Q16881 649 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms