RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 POLKQ9UBT6 870 aa17.71■□□□□ 0.43
VPS33A-202ENST00000451053 RGPD5Q99666 1765 aa17.71■□□□□ 0.43
VPS33A-202ENST00000451053 MAP2P11137 1827 aaKnown RBP17.7■□□□□ 0.42
VPS33A-202ENST00000451053 PARD3Q8TEW0 1356 aa17.7■□□□□ 0.42
VPS33A-202ENST00000451053 AMPHP49418 695 aa17.7■□□□□ 0.42
VPS33A-202ENST00000451053 PHF23Q9BUL5 403 aaPredicted RBP17.7■□□□□ 0.42
VPS33A-202ENST00000451053 USP21Q9UK80 565 aa17.7■□□□□ 0.42
VPS33A-202ENST00000451053 RTL1A6NKG5 1358 aa17.69■□□□□ 0.42
VPS33A-202ENST00000451053 HOXC9P31274 260 aa17.69■□□□□ 0.42
VPS33A-202ENST00000451053 IP6K1Q92551 441 aa17.69■□□□□ 0.42
VPS33A-202ENST00000451053 RGS17Q9UGC6 210 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-202ENST00000451053 SMG6Q86US8 1419 aaKnown RBP17.69■□□□□ 0.42
VPS33A-202ENST00000451053 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.69■□□□□ 0.42
VPS33A-202ENST00000451053 COL5A2P05997 1499 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-202ENST00000451053 PPM1GO15355 546 aaPredicted RBP17.68■□□□□ 0.42
VPS33A-202ENST00000451053 UNC5CLQ8IV45 518 aa17.68■□□□□ 0.42
VPS33A-202ENST00000451053 FLT4P35916 1363 aa17.67■□□□□ 0.42
VPS33A-202ENST00000451053 STRN4Q9NRL3 753 aa17.67■□□□□ 0.42
VPS33A-202ENST00000451053 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
VPS33A-202ENST00000451053 BLMP54132 1417 aaPredicted RBP17.66■□□□□ 0.42
VPS33A-202ENST00000451053 ATRNO75882 1429 aa17.65■□□□□ 0.42
VPS33A-202ENST00000451053 PPP2R1AP30153 589 aa17.65■□□□□ 0.42
VPS33A-202ENST00000451053 HSP90AB2PQ58FF8 381 aa17.65■□□□□ 0.42
VPS33A-202ENST00000451053 ZNF772Q68DY9 489 aaPredicted RBP17.65■□□□□ 0.42
VPS33A-202ENST00000451053 CDK12Q9NYV4 1490 aaPredicted RBP17.64■□□□□ 0.41
VPS33A-202ENST00000451053 MTHFSP49914 203 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 EVA1CP58658 441 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 RALBP1Q15311 655 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 ANKRD24Q8TF21 1146 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 ERBB3P21860 1342 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 INSRP06213 1382 aa17.64■□□□□ 0.41
VPS33A-202ENST00000451053 VPS72Q15906 364 aa17.63■□□□□ 0.41
VPS33A-202ENST00000451053 LARP1Q6PKG0 1096 aaKnown RBP17.63■□□□□ 0.41
VPS33A-202ENST00000451053 LTV1Q96GA3 475 aaPredicted RBP17.63■□□□□ 0.41
VPS33A-202ENST00000451053 PRKRIP1Q9H875 184 aaPredicted RBP17.63■□□□□ 0.41
VPS33A-202ENST00000451053 POTEAQ6S8J7 498 aa17.62■□□□□ 0.41
VPS33A-202ENST00000451053 QTRT2Q9H974 415 aaKnown RBP17.62■□□□□ 0.41
VPS33A-202ENST00000451053 TRPC5Q9UL62 973 aaPredicted RBP17.62■□□□□ 0.41
VPS33A-202ENST00000451053 WDR17Q8IZU2 1322 aa17.62■□□□□ 0.41
VPS33A-202ENST00000451053 CSB-PGBD3P0DP91 1061 aa17.61■□□□□ 0.41
VPS33A-202ENST00000451053 CCDC9Q9Y3X0 531 aaKnown RBP17.6■□□□□ 0.41
VPS33A-202ENST00000451053 SPATA31A5Q5VU36 1347 aa17.6■□□□□ 0.41
VPS33A-202ENST00000451053 SPATA31A7Q8IWB4 1347 aa17.6■□□□□ 0.41
VPS33A-202ENST00000451053 CRB1P82279 1406 aa17.6■□□□□ 0.41
VPS33A-202ENST00000451053 GLI3P10071 1580 aa17.6■□□□□ 0.41
VPS33A-202ENST00000451053 COL3A1P02461 1466 aaPredicted RBP17.59■□□□□ 0.41
VPS33A-202ENST00000451053 MYBBP1AQ9BQG0 1328 aaKnown RBP17.59■□□□□ 0.41
VPS33A-202ENST00000451053 TOM1L2Q6ZVM7 507 aa17.59■□□□□ 0.41
VPS33A-202ENST00000451053 RGPD2P0DJD1 1756 aa17.58■□□□□ 0.41
VPS33A-202ENST00000451053 FAM208AQ9UK61 1670 aaKnown RBP17.58■□□□□ 0.41
VPS33A-202ENST00000451053 SPATA31A1Q5TZJ5 1347 aa17.58■□□□□ 0.4
VPS33A-202ENST00000451053 EIF4A2Q14240 407 aaKnown RBP17.58■□□□□ 0.4
VPS33A-202ENST00000451053 GJD4Q96KN9 370 aaPredicted RBP17.58■□□□□ 0.4
VPS33A-202ENST00000451053 NLRP2Q9NX02 1062 aa17.58■□□□□ 0.4
VPS33A-202ENST00000451053 ANP32CO43423 234 aa17.57■□□□□ 0.4
VPS33A-202ENST00000451053 USP35Q9P2H5 1018 aa17.57■□□□□ 0.4
VPS33A-202ENST00000451053 CARD10Q9BWT7 1032 aa17.56■□□□□ 0.4
VPS33A-202ENST00000451053 RBM6P78332 1123 aaKnown RBP17.55■□□□□ 0.4
VPS33A-202ENST00000451053 NBPF6Q5VWK0 638 aa17.55■□□□□ 0.4
VPS33A-202ENST00000451053 NBPF4Q96M43 638 aa17.55■□□□□ 0.4
VPS33A-202ENST00000451053 IL13P35225 146 aa17.54■□□□□ 0.4
VPS33A-202ENST00000451053 TCP11L2Q8N4U5 519 aa17.54■□□□□ 0.4
VPS33A-202ENST00000451053 USHBP1Q8N6Y0 703 aa17.54■□□□□ 0.4
VPS33A-202ENST00000451053 CFAP53Q96M91 514 aa17.54■□□□□ 0.4
VPS33A-202ENST00000451053 DIAPH1O60610 1272 aaKnown RBP17.53■□□□□ 0.4
VPS33A-202ENST00000451053 RXRBP28702 533 aa17.53■□□□□ 0.4
VPS33A-202ENST00000451053 EYA1Q99502 592 aa17.53■□□□□ 0.4
VPS33A-202ENST00000451053 RGPD1P0DJD0 1748 aa17.52■□□□□ 0.4
VPS33A-202ENST00000451053 FAM98CQ17RN3 349 aaKnown RBP17.52■□□□□ 0.4
VPS33A-202ENST00000451053 WNK3Q9BYP7 1800 aa17.51■□□□□ 0.39
VPS33A-202ENST00000451053 IGSF1Q8N6C5 1336 aa17.51■□□□□ 0.39
VPS33A-202ENST00000451053 NCAPD2Q15021 1401 aa17.51■□□□□ 0.39
VPS33A-202ENST00000451053 BARGINQ6ZT62 677 aa17.51■□□□□ 0.39
VPS33A-202ENST00000451053 THRAP3Q9Y2W1 955 aaKnown RBP17.51■□□□□ 0.39
VPS33A-202ENST00000451053 THSD7AQ9UPZ6 1657 aa17.51■□□□□ 0.39
VPS33A-202ENST00000451053 DISP2A7MBM2 1401 aa17.5■□□□□ 0.39
VPS33A-202ENST00000451053 RGS12O14924 1447 aa17.5■□□□□ 0.39
VPS33A-202ENST00000451053 ONECUT3O60422 494 aaPredicted RBP17.48■□□□□ 0.39
VPS33A-202ENST00000451053 AEBP1Q8IUX7 1158 aa17.48■□□□□ 0.39
VPS33A-202ENST00000451053 MEGF6O75095 1541 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 A0A0G2JS52 829 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 U2SURPO15042 1029 aaKnown RBP17.47■□□□□ 0.39
VPS33A-202ENST00000451053 MYT1Q01538 1121 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 CCDC184Q52MB2 194 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 SEPT12Q8IYM1 358 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 MIER1Q8N108 512 aa17.47■□□□□ 0.39
VPS33A-202ENST00000451053 IL2RBP14784 551 aa17.46■□□□□ 0.39
VPS33A-202ENST00000451053 PARP4Q9UKK3 1724 aaKnown RBP17.46■□□□□ 0.39
VPS33A-202ENST00000451053 LRRC37A3O60309 1634 aa17.46■□□□□ 0.39
VPS33A-202ENST00000451053 SULT6B1Q6IMI4 303 aa17.45■□□□□ 0.38
VPS33A-202ENST00000451053 NUDCQ9Y266 331 aa17.45■□□□□ 0.38
VPS33A-202ENST00000451053 KDRP35968 1356 aa17.44■□□□□ 0.38
VPS33A-202ENST00000451053 HMOX1P09601 288 aa17.44■□□□□ 0.38
VPS33A-202ENST00000451053 CDCA7Q9BWT1 371 aaPredicted RBP17.44■□□□□ 0.38
VPS33A-202ENST00000451053 OVOS2A0A0G2JMS6 1433 aa17.44■□□□□ 0.38
VPS33A-202ENST00000451053 BRWD3Q6RI45 1802 aa17.43■□□□□ 0.38
VPS33A-202ENST00000451053 RAPGEF4Q8WZA2 1011 aa17.43■□□□□ 0.38
VPS33A-202ENST00000451053 CCER2I3L3R5 266 aa17.42■□□□□ 0.38
VPS33A-202ENST00000451053 U2AF1L5P0DN76 240 aaPredicted RBP17.42■□□□□ 0.38
VPS33A-202ENST00000451053 TATP17735 454 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms