RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 EP400Q96L91 3159 aa21.43■■□□□ 1.02
CHD3-205ENST00000449744 TMF1P82094 1093 aa21.43■■□□□ 1.02
CHD3-205ENST00000449744 FAM196AQ6ZSG2 479 aa21.43■■□□□ 1.02
CHD3-205ENST00000449744 A0A1W2PP64 1363 aa21.43■■□□□ 1.02
CHD3-205ENST00000449744 EDC4Q6P2E9 1401 aaKnown RBP21.43■■□□□ 1.02
CHD3-205ENST00000449744 CSB-PGBD3P0DP91 1061 aa21.42■■□□□ 1.02
CHD3-205ENST00000449744 AXIN2Q9Y2T1 843 aa21.42■■□□□ 1.02
CHD3-205ENST00000449744 COL18A1P39060 1754 aa21.41■■□□□ 1.02
CHD3-205ENST00000449744 SRCAPQ6ZRS2 3230 aa21.41■■□□□ 1.02
CHD3-205ENST00000449744 WDR17Q8IZU2 1322 aa21.4■■□□□ 1.02
CHD3-205ENST00000449744 RGPD1P0DJD0 1748 aa21.4■■□□□ 1.02
CHD3-205ENST00000449744 NFAT5O94916 1531 aa21.39■■□□□ 1.02
CHD3-205ENST00000449744 CCER1Q8TC90 406 aaPredicted RBP21.38■■□□□ 1.01
CHD3-205ENST00000449744 TRIM37O94972 964 aa21.37■■□□□ 1.01
CHD3-205ENST00000449744 CDCA8Q53HL2 280 aa21.37■■□□□ 1.01
CHD3-205ENST00000449744 USP54Q70EL1 1684 aa21.37■■□□□ 1.01
CHD3-205ENST00000449744 EN1Q05925 392 aaPredicted RBP21.36■■□□□ 1.01
CHD3-205ENST00000449744 PARP4Q9UKK3 1724 aaKnown RBP21.35■■□□□ 1.01
CHD3-205ENST00000449744 ABCC6O95255 1503 aa21.35■■□□□ 1.01
CHD3-205ENST00000449744 RGPD5Q99666 1765 aa21.35■■□□□ 1.01
CHD3-205ENST00000449744 DDB1Q16531 1140 aa21.34■■□□□ 1.01
CHD3-205ENST00000449744 CDCA7Q9BWT1 371 aaPredicted RBP21.34■■□□□ 1.01
CHD3-205ENST00000449744 CARD10Q9BWT7 1032 aa21.34■■□□□ 1.01
CHD3-205ENST00000449744 ANKRD36BQ8N2N9 1353 aa21.34■■□□□ 1.01
CHD3-205ENST00000449744 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
CHD3-205ENST00000449744 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
CHD3-205ENST00000449744 C11orf95C9JLR9 678 aaPredicted RBP21.33■■□□□ 1.01
CHD3-205ENST00000449744 COG3Q96JB2 828 aa21.33■■□□□ 1.01
CHD3-205ENST00000449744 APBA3O96018 575 aa21.32■■□□□ 1
CHD3-205ENST00000449744 TNS1Q9HBL0 1735 aaKnown RBP21.32■■□□□ 1
CHD3-205ENST00000449744 DISP2A7MBM2 1401 aa21.31■■□□□ 1
CHD3-205ENST00000449744 CCDC7Q96M83 1385 aa21.31■■□□□ 1
CHD3-205ENST00000449744 LTN1O94822 1766 aa21.31■■□□□ 1
CHD3-205ENST00000449744 OVOS2A0A0G2JMS6 1433 aa21.29■■□□□ 1
CHD3-205ENST00000449744 LRRC37A3O60309 1634 aa21.29■■□□□ 1
CHD3-205ENST00000449744 EZH2Q15910 746 aaKnown RBP21.29■■□□□ 1
CHD3-205ENST00000449744 NLRP2Q9NX02 1062 aa21.29■■□□□ 1
CHD3-205ENST00000449744 ERBB3P21860 1342 aa21.29■■□□□ 1
CHD3-205ENST00000449744 WNK3Q9BYP7 1800 aa21.27■■□□□ 1
CHD3-205ENST00000449744 ANKRD24Q8TF21 1146 aa21.27■■□□□ 1
CHD3-205ENST00000449744 EXOC5O00471 708 aa21.26■□□□□ 0.99
CHD3-205ENST00000449744 CAMKK2Q96RR4 588 aa21.26■□□□□ 0.99
CHD3-205ENST00000449744 PARD3Q8TEW0 1356 aa21.25■□□□□ 0.99
CHD3-205ENST00000449744 PSDA5PKW4 1024 aaPredicted RBP21.25■□□□□ 0.99
CHD3-205ENST00000449744 IP6K1Q92551 441 aa21.25■□□□□ 0.99
CHD3-205ENST00000449744 AMPHP49418 695 aa21.24■□□□□ 0.99
CHD3-205ENST00000449744 MARCH10Q8NA82 808 aaPredicted RBP21.23■□□□□ 0.99
CHD3-205ENST00000449744 GGNBP2Q9H3C7 697 aa21.23■□□□□ 0.99
CHD3-205ENST00000449744 PEAK1Q9H792 1746 aa21.22■□□□□ 0.99
CHD3-205ENST00000449744 FYB1O15117 783 aa21.22■□□□□ 0.99
CHD3-205ENST00000449744 LTV1Q96GA3 475 aaPredicted RBP21.22■□□□□ 0.99
CHD3-205ENST00000449744 MAP3K19Q56UN5 1328 aa21.22■□□□□ 0.99
CHD3-205ENST00000449744 IL2RBP14784 551 aa21.21■□□□□ 0.99
CHD3-205ENST00000449744 EIF4G2P78344 907 aaKnown RBP eCLIP21.21■□□□□ 0.99
CHD3-205ENST00000449744 POLR3GLQ9BT43 218 aa21.21■□□□□ 0.99
CHD3-205ENST00000449744 FBLN1P23142 703 aa21.19■□□□□ 0.98
CHD3-205ENST00000449744 HOXC9P31274 260 aa21.19■□□□□ 0.98
CHD3-205ENST00000449744 R3HDM1Q15032 1099 aaKnown RBP21.19■□□□□ 0.98
CHD3-205ENST00000449744 TNS2Q63HR2 1409 aa21.19■□□□□ 0.98
CHD3-205ENST00000449744 BCL11BQ9C0K0 894 aaPredicted RBP21.18■□□□□ 0.98
CHD3-205ENST00000449744 RRS1Q15050 365 aaKnown RBP21.17■□□□□ 0.98
CHD3-205ENST00000449744 NBPF14Q5TI25 921 aa21.17■□□□□ 0.98
CHD3-205ENST00000449744 BCL9O00512 1426 aa21.17■□□□□ 0.98
CHD3-205ENST00000449744 NSD3Q9BZ95 1437 aa21.17■□□□□ 0.98
CHD3-205ENST00000449744 MYOM1P52179 1685 aa21.17■□□□□ 0.98
CHD3-205ENST00000449744 SBF2Q86WG5 1849 aa21.16■□□□□ 0.98
CHD3-205ENST00000449744 KIF20BQ96Q89 1820 aa21.16■□□□□ 0.98
CHD3-205ENST00000449744 HSPA5P11021 654 aaKnown RBP21.16■□□□□ 0.98
CHD3-205ENST00000449744 CARD14Q9BXL6 1004 aa21.16■□□□□ 0.98
CHD3-205ENST00000449744 FAM208AQ9UK61 1670 aaKnown RBP21.15■□□□□ 0.98
CHD3-205ENST00000449744 RTL1A6NKG5 1358 aa21.15■□□□□ 0.98
CHD3-205ENST00000449744 RREB1Q92766 1687 aa21.15■□□□□ 0.98
CHD3-205ENST00000449744 PLSCR1O15162 318 aa21.14■□□□□ 0.97
CHD3-205ENST00000449744 PTF1AQ7RTS3 328 aa21.12■□□□□ 0.97
CHD3-205ENST00000449744 NUP188Q5SRE5 1749 aa21.12■□□□□ 0.97
CHD3-205ENST00000449744 SMG6Q86US8 1419 aaKnown RBP21.11■□□□□ 0.97
CHD3-205ENST00000449744 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
CHD3-205ENST00000449744 ACSBG1Q96GR2 724 aa21.1■□□□□ 0.97
CHD3-205ENST00000449744 RGPD3A6NKT7 1758 aaPredicted RBP21.1■□□□□ 0.97
CHD3-205ENST00000449744 RGPD4Q7Z3J3 1758 aa21.1■□□□□ 0.97
CHD3-205ENST00000449744 LRP5O75197 1615 aa21.09■□□□□ 0.97
CHD3-205ENST00000449744 DDX54Q8TDD1 881 aaKnown RBP21.08■□□□□ 0.97
CHD3-205ENST00000449744 FLT4P35916 1363 aa21.08■□□□□ 0.96
CHD3-205ENST00000449744 KIF24Q5T7B8 1368 aa21.08■□□□□ 0.96
CHD3-205ENST00000449744 KCNQ2O43526 872 aa21.07■□□□□ 0.96
CHD3-205ENST00000449744 HSP90AB2PQ58FF8 381 aa21.06■□□□□ 0.96
CHD3-205ENST00000449744 NBPF6Q5VWK0 638 aa21.06■□□□□ 0.96
CHD3-205ENST00000449744 NBPF4Q96M43 638 aa21.06■□□□□ 0.96
CHD3-205ENST00000449744 INSRP06213 1382 aa21.06■□□□□ 0.96
CHD3-205ENST00000449744 RGPD2P0DJD1 1756 aa21.05■□□□□ 0.96
CHD3-205ENST00000449744 PPM1GO15355 546 aaPredicted RBP21.05■□□□□ 0.96
CHD3-205ENST00000449744 NHSQ6T4R5 1651 aa21.05■□□□□ 0.96
CHD3-205ENST00000449744 TXNRD1Q16881 649 aa21.04■□□□□ 0.96
CHD3-205ENST00000449744 USHBP1Q8N6Y0 703 aa21.04■□□□□ 0.96
CHD3-205ENST00000449744 RAPGEF4Q8WZA2 1011 aa21.04■□□□□ 0.96
CHD3-205ENST00000449744 EMILIN1Q9Y6C2 1016 aa21.04■□□□□ 0.96
CHD3-205ENST00000449744 PROM2Q8N271 834 aa21.03■□□□□ 0.96
CHD3-205ENST00000449744 ZCRB1Q8TBF4 217 aaKnown RBP21.03■□□□□ 0.96
CHD3-205ENST00000449744 PANK3Q9H999 370 aa21.02■□□□□ 0.96
CHD3-205ENST00000449744 MEGF6O75095 1541 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms