RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 KLF16Q9BXK1 252 aaPredicted RBP10.27□□□□□ -0.77
VPS50-206ENST00000443443 SNRKQ9NRH2 765 aa10.27□□□□□ -0.77
VPS50-206ENST00000443443 SCARF1Q14162 830 aa10.26□□□□□ -0.77
VPS50-206ENST00000443443 TRIM46Q7Z4K8 759 aa10.26□□□□□ -0.77
VPS50-206ENST00000443443 CCDC116Q8IYX3 515 aa10.26□□□□□ -0.77
VPS50-206ENST00000443443 KIFC2Q96AC6 838 aa10.26□□□□□ -0.77
VPS50-206ENST00000443443 TRIM47Q96LD4 638 aa10.26□□□□□ -0.77
VPS50-206ENST00000443443 CDV3Q9UKY7 258 aaKnown RBP10.26□□□□□ -0.77
VPS50-206ENST00000443443 APBB1O00213 710 aa10.24□□□□□ -0.77
VPS50-206ENST00000443443 RAB15P59190 212 aa10.24□□□□□ -0.77
VPS50-206ENST00000443443 MRPL14Q6P1L8 145 aaKnown RBP10.24□□□□□ -0.77
VPS50-206ENST00000443443 EMILIN1Q9Y6C2 1016 aa10.24□□□□□ -0.77
VPS50-206ENST00000443443 MTMR14Q8NCE2 650 aa10.23□□□□□ -0.77
VPS50-206ENST00000443443 ZFP42Q96MM3 310 aa10.23□□□□□ -0.77
VPS50-206ENST00000443443 PURBQ96QR8 312 aaKnown RBP10.23□□□□□ -0.77
VPS50-206ENST00000443443 ZBBXA8MT70 800 aa10.22□□□□□ -0.77
VPS50-206ENST00000443443 UPP2O95045 317 aa10.22□□□□□ -0.77
VPS50-206ENST00000443443 C6orf118Q5T5N4 469 aa10.22□□□□□ -0.77
VPS50-206ENST00000443443 PPP1R26Q5T8A7 1209 aaPredicted RBP10.22□□□□□ -0.77
VPS50-206ENST00000443443 NBPF20Q3BBV1 942 aa10.21□□□□□ -0.77
VPS50-206ENST00000443443 PGPEP1Q9NXJ5 209 aa10.21□□□□□ -0.77
VPS50-206ENST00000443443 PCDHB9Q9Y5E1 797 aa10.21□□□□□ -0.77
VPS50-206ENST00000443443 NDUFB9Q9Y6M9 179 aa10.21□□□□□ -0.77
VPS50-206ENST00000443443 WFS1O76024 890 aa10.2□□□□□ -0.78
VPS50-206ENST00000443443 FBXO45P0C2W1 286 aa10.2□□□□□ -0.78
VPS50-206ENST00000443443 DHX9Q08211 1270 aaKnown RBP10.2□□□□□ -0.78
VPS50-206ENST00000443443 BMP2P12643 396 aa10.19□□□□□ -0.78
VPS50-206ENST00000443443 NFX1Q12986 1120 aaKnown RBP10.19□□□□□ -0.78
VPS50-206ENST00000443443 INTS6LQ5JSJ4 861 aaKnown RBP10.19□□□□□ -0.78
VPS50-206ENST00000443443 PRM3Q9NNZ6 103 aa10.19□□□□□ -0.78
VPS50-206ENST00000443443 LCE2CQ5TA81 110 aa10.18□□□□□ -0.78
VPS50-206ENST00000443443 CBLBQ13191 982 aa10.17□□□□□ -0.78
VPS50-206ENST00000443443 ZNF330Q9Y3S2 320 aaPredicted RBP10.16□□□□□ -0.78
VPS50-206ENST00000443443 SOCS7O14512 581 aa10.15□□□□□ -0.78
VPS50-206ENST00000443443 NR1H3Q13133 447 aa10.15□□□□□ -0.78
VPS50-206ENST00000443443 LINC00528Q8N1L1 170 aa10.15□□□□□ -0.78
VPS50-206ENST00000443443 MEIOBQ8N635 442 aa10.15□□□□□ -0.78
VPS50-206ENST00000443443 TSEN34Q9BSV6 310 aaKnown RBP10.15□□□□□ -0.78
VPS50-206ENST00000443443 TMPRSS4Q9NRS4 437 aa10.15□□□□□ -0.78
VPS50-206ENST00000443443 ERVH48-1M5A8F1 160 aa10.14□□□□□ -0.79
VPS50-206ENST00000443443 TBC1D2BQ9UPU7 963 aa10.14□□□□□ -0.79
VPS50-206ENST00000443443 MAN1A2O60476 641 aa10.13□□□□□ -0.79
VPS50-206ENST00000443443 GIGYF1O75420 1035 aaPredicted RBP10.13□□□□□ -0.79
VPS50-206ENST00000443443 SOBPA7XYQ1 873 aa10.12□□□□□ -0.79
VPS50-206ENST00000443443 ZNF784Q8NCA9 323 aaPredicted RBP10.11□□□□□ -0.79
VPS50-206ENST00000443443 AGBL1Q96MI9 1066 aa10.11□□□□□ -0.79
VPS50-206ENST00000443443 ESPNB1AK53 854 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 TERTO14746 1132 aaKnown RBP10.1□□□□□ -0.79
VPS50-206ENST00000443443 MCCD1P59942 119 aaPredicted RBP10.1□□□□□ -0.79
VPS50-206ENST00000443443 RELBQ01201 579 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 Q6ZVU0 165 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 SEPT12Q8IYM1 358 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 ZNF592Q92610 1267 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 GDPD2Q9HCC8 539 aa10.1□□□□□ -0.79
VPS50-206ENST00000443443 ABL2P42684 1182 aa10.09□□□□□ -0.79
VPS50-206ENST00000443443 RNF20Q5VTR2 975 aa10.09□□□□□ -0.79
VPS50-206ENST00000443443 NXF1Q9UBU9 619 aaKnown RBP10.09□□□□□ -0.79
VPS50-206ENST00000443443 GPR37L1O60883 481 aa10.08□□□□□ -0.8
VPS50-206ENST00000443443 TRIM52Q96A61 297 aa10.08□□□□□ -0.8
VPS50-206ENST00000443443 ZNF395Q9H8N7 513 aaPredicted RBP10.08□□□□□ -0.8
VPS50-206ENST00000443443 CYLDQ9NQC7 956 aa10.08□□□□□ -0.8
VPS50-206ENST00000443443 FIGNL2A6NMB9 653 aa10.07□□□□□ -0.8
VPS50-206ENST00000443443 VEGFBP49765 207 aa10.07□□□□□ -0.8
VPS50-206ENST00000443443 SLC16A10Q8TF71 515 aa10.07□□□□□ -0.8
VPS50-206ENST00000443443 ESF1Q9H501 851 aaKnown RBP10.07□□□□□ -0.8
VPS50-206ENST00000443443 TTLL8A6PVC2 850 aa10.06□□□□□ -0.8
VPS50-206ENST00000443443 WIPF1O43516 503 aa10.06□□□□□ -0.8
VPS50-206ENST00000443443 ADD1P35611 737 aaKnown RBP10.06□□□□□ -0.8
VPS50-206ENST00000443443 SOS2Q07890 1332 aaPredicted RBP10.06□□□□□ -0.8
VPS50-206ENST00000443443 LILRA1O75019 489 aa10.05□□□□□ -0.8
VPS50-206ENST00000443443 SPINT1O43278 529 aa10.04□□□□□ -0.8
VPS50-206ENST00000443443 EIF4G2P78344 907 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS50-206ENST00000443443 MCM6Q14566 821 aa10.04□□□□□ -0.8
VPS50-206ENST00000443443 INSM2Q96T92 566 aaPredicted RBP10.04□□□□□ -0.8
VPS50-206ENST00000443443 POLMQ9NP87 494 aaPredicted RBP10.04□□□□□ -0.8
VPS50-206ENST00000443443 ADH1AP07327 375 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 VAC14Q08AM6 782 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 IRF5Q13568 498 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 CCDC125Q86Z20 511 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 DNMT3LQ9UJW3 386 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 PCDHB11Q9Y5F2 797 aa10.03□□□□□ -0.8
VPS50-206ENST00000443443 CEP126Q9P2H0 1117 aa10.02□□□□□ -0.81
VPS50-206ENST00000443443 PTGIRP43119 386 aa10.01□□□□□ -0.81
VPS50-206ENST00000443443 CTSOP43234 321 aaPredicted RBP10.01□□□□□ -0.81
VPS50-206ENST00000443443 TMEM132AQ24JP5 1023 aa10.01□□□□□ -0.81
VPS50-206ENST00000443443 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.01□□□□□ -0.81
VPS50-206ENST00000443443 CC2D2BQ6DHV5 1058 aa10□□□□□ -0.81
VPS50-206ENST00000443443 ATP5J2-PTCD1G3V325 749 aa9.99□□□□□ -0.81
VPS50-206ENST00000443443 WASHC4Q2M389 1173 aa9.99□□□□□ -0.81
VPS50-206ENST00000443443 NPAS3Q8IXF0 933 aa9.99□□□□□ -0.81
VPS50-206ENST00000443443 RAD21O60216 631 aa9.98□□□□□ -0.81
VPS50-206ENST00000443443 INSM1Q01101 510 aaPredicted RBP9.98□□□□□ -0.81
VPS50-206ENST00000443443 SLFNL1Q499Z3 407 aa9.98□□□□□ -0.81
VPS50-206ENST00000443443 IRF7Q92985 503 aa9.98□□□□□ -0.81
VPS50-206ENST00000443443 COG6Q9Y2V7 657 aa9.98□□□□□ -0.81
VPS50-206ENST00000443443 H3BM21 787 aa9.97□□□□□ -0.81
VPS50-206ENST00000443443 MEN1O00255 615 aa9.97□□□□□ -0.81
VPS50-206ENST00000443443 SCTRP47872 440 aa9.97□□□□□ -0.81
VPS50-206ENST00000443443 ERVK-9P63128 1117 aa9.97□□□□□ -0.81
VPS50-206ENST00000443443 FLIIQ13045 1269 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms