RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 TIMELESSQ9UNS1 1208 aa27.85■■■□□ 2.05
SHROOM1-204ENST00000440118 NFAT5O94916 1531 aa27.85■■■□□ 2.05
SHROOM1-204ENST00000440118 LTN1O94822 1766 aa27.85■■■□□ 2.05
SHROOM1-204ENST00000440118 TOM1L2Q6ZVM7 507 aa27.84■■■□□ 2.05
SHROOM1-204ENST00000440118 NME9Q86XW9 330 aa27.84■■■□□ 2.05
SHROOM1-204ENST00000440118 THRAP3Q9Y2W1 955 aaKnown RBP27.84■■■□□ 2.05
SHROOM1-204ENST00000440118 BAG6P46379 1132 aa27.83■■■□□ 2.05
SHROOM1-204ENST00000440118 TMF1P82094 1093 aa27.83■■■□□ 2.05
SHROOM1-204ENST00000440118 PARP4Q9UKK3 1724 aaKnown RBP27.83■■■□□ 2.05
SHROOM1-204ENST00000440118 WNK3Q9BYP7 1800 aa27.83■■■□□ 2.05
SHROOM1-204ENST00000440118 CSB-PGBD3P0DP91 1061 aa27.82■■■□□ 2.04
SHROOM1-204ENST00000440118 CCER1Q8TC90 406 aaPredicted RBP27.82■■■□□ 2.04
SHROOM1-204ENST00000440118 ARHGEF25Q86VW2 580 aa27.81■■■□□ 2.04
SHROOM1-204ENST00000440118 USP31Q70CQ4 1352 aa27.8■■■□□ 2.04
SHROOM1-204ENST00000440118 ABCC6O95255 1503 aa27.8■■■□□ 2.04
SHROOM1-204ENST00000440118 TNS1Q9HBL0 1735 aaKnown RBP27.8■■■□□ 2.04
SHROOM1-204ENST00000440118 WDR17Q8IZU2 1322 aa27.79■■■□□ 2.04
SHROOM1-204ENST00000440118 FAM196AQ6ZSG2 479 aa27.79■■■□□ 2.04
SHROOM1-204ENST00000440118 CDCA8Q53HL2 280 aa27.76■■■□□ 2.03
SHROOM1-204ENST00000440118 AXIN2Q9Y2T1 843 aa27.76■■■□□ 2.03
SHROOM1-204ENST00000440118 LRRC37A3O60309 1634 aa27.76■■■□□ 2.03
SHROOM1-204ENST00000440118 SRCAPQ6ZRS2 3230 aa27.75■■■□□ 2.03
SHROOM1-204ENST00000440118 ANKRD36BQ8N2N9 1353 aa27.73■■■□□ 2.03
SHROOM1-204ENST00000440118 TRIM37O94972 964 aa27.72■■■□□ 2.03
SHROOM1-204ENST00000440118 OVOS2A0A0J9YW53 1432 aa27.72■■■□□ 2.03
SHROOM1-204ENST00000440118 OVOS2Q6IE36 1432 aa27.72■■■□□ 2.03
SHROOM1-204ENST00000440118 DDB1Q16531 1140 aa27.7■■■□□ 2.02
SHROOM1-204ENST00000440118 COG3Q96JB2 828 aa27.7■■■□□ 2.02
SHROOM1-204ENST00000440118 EN1Q05925 392 aaPredicted RBP27.69■■■□□ 2.02
SHROOM1-204ENST00000440118 KIF20BQ96Q89 1820 aa27.69■■■□□ 2.02
SHROOM1-204ENST00000440118 OVOS2A0A0G2JMS6 1433 aa27.68■■■□□ 2.02
SHROOM1-204ENST00000440118 CDCA7Q9BWT1 371 aaPredicted RBP27.68■■■□□ 2.02
SHROOM1-204ENST00000440118 CARD10Q9BWT7 1032 aa27.68■■■□□ 2.02
SHROOM1-204ENST00000440118 CCDC7Q96M83 1385 aa27.67■■■□□ 2.02
SHROOM1-204ENST00000440118 DISP2A7MBM2 1401 aa27.67■■■□□ 2.02
SHROOM1-204ENST00000440118 MYOM1P52179 1685 aa27.65■■■□□ 2.02
SHROOM1-204ENST00000440118 C11orf95C9JLR9 678 aaPredicted RBP27.65■■■□□ 2.02
SHROOM1-204ENST00000440118 APBA3O96018 575 aa27.64■■■□□ 2.02
SHROOM1-204ENST00000440118 NLRP2Q9NX02 1062 aa27.64■■■□□ 2.02
SHROOM1-204ENST00000440118 ERBB3P21860 1342 aa27.64■■■□□ 2.01
SHROOM1-204ENST00000440118 FAM208AQ9UK61 1670 aaKnown RBP27.63■■■□□ 2.01
SHROOM1-204ENST00000440118 PEAK1Q9H792 1746 aa27.62■■■□□ 2.01
SHROOM1-204ENST00000440118 SBF2Q86WG5 1849 aa27.62■■■□□ 2.01
SHROOM1-204ENST00000440118 ANKRD24Q8TF21 1146 aa27.61■■■□□ 2.01
SHROOM1-204ENST00000440118 POLR3GLQ9BT43 218 aa27.61■■■□□ 2.01
SHROOM1-204ENST00000440118 EZH2Q15910 746 aaKnown RBP27.59■■■□□ 2.01
SHROOM1-204ENST00000440118 PARD3Q8TEW0 1356 aa27.59■■■□□ 2.01
SHROOM1-204ENST00000440118 PSDA5PKW4 1024 aaPredicted RBP27.57■■■□□ 2
SHROOM1-204ENST00000440118 AMPHP49418 695 aa27.57■■■□□ 2
SHROOM1-204ENST00000440118 LTV1Q96GA3 475 aaPredicted RBP27.57■■■□□ 2
SHROOM1-204ENST00000440118 GGNBP2Q9H3C7 697 aa27.57■■■□□ 2
SHROOM1-204ENST00000440118 TNS2Q63HR2 1409 aa27.57■■■□□ 2
SHROOM1-204ENST00000440118 RREB1Q92766 1687 aa27.56■■■□□ 2
SHROOM1-204ENST00000440118 EXOC5O00471 708 aa27.56■■■□□ 2
SHROOM1-204ENST00000440118 EIF4G2P78344 907 aaKnown RBP eCLIP27.55■■■□□ 2
SHROOM1-204ENST00000440118 IP6K1Q92551 441 aa27.55■■■□□ 2
SHROOM1-204ENST00000440118 MAP3K19Q56UN5 1328 aa27.54■■■□□ 2
SHROOM1-204ENST00000440118 NSD3Q9BZ95 1437 aa27.54■■■□□ 2
SHROOM1-204ENST00000440118 NUP188Q5SRE5 1749 aa27.53■■■□□ 2
SHROOM1-204ENST00000440118 CAMKK2Q96RR4 588 aa27.53■■■□□ 2
SHROOM1-204ENST00000440118 FYB1O15117 783 aa27.52■■■□□ 2
SHROOM1-204ENST00000440118 IL2RBP14784 551 aa27.52■■■□□ 2
SHROOM1-204ENST00000440118 MARCH10Q8NA82 808 aaPredicted RBP27.52■■■□□ 2
SHROOM1-204ENST00000440118 RTL1A6NKG5 1358 aa27.51■■□□□ 1.99
SHROOM1-204ENST00000440118 RGPD3A6NKT7 1758 aaPredicted RBP27.51■■□□□ 1.99
SHROOM1-204ENST00000440118 RGPD4Q7Z3J3 1758 aa27.51■■□□□ 1.99
SHROOM1-204ENST00000440118 KAT6BQ8WYB5 2073 aa27.51■■□□□ 1.99
SHROOM1-204ENST00000440118 HOXC9P31274 260 aa27.5■■□□□ 1.99
SHROOM1-204ENST00000440118 RGPD2P0DJD1 1756 aa27.5■■□□□ 1.99
SHROOM1-204ENST00000440118 SMG6Q86US8 1419 aaKnown RBP27.5■■□□□ 1.99
SHROOM1-204ENST00000440118 FBLN1P23142 703 aa27.49■■□□□ 1.99
SHROOM1-204ENST00000440118 R3HDM1Q15032 1099 aaKnown RBP27.49■■□□□ 1.99
SHROOM1-204ENST00000440118 HSPA5P11021 654 aaKnown RBP27.48■■□□□ 1.99
SHROOM1-204ENST00000440118 RRS1Q15050 365 aaKnown RBP27.48■■□□□ 1.99
SHROOM1-204ENST00000440118 LRP5O75197 1615 aa27.46■■□□□ 1.99
SHROOM1-204ENST00000440118 BCL11BQ9C0K0 894 aaPredicted RBP27.46■■□□□ 1.99
SHROOM1-204ENST00000440118 BCL9O00512 1426 aa27.46■■□□□ 1.99
SHROOM1-204ENST00000440118 NBPF14Q5TI25 921 aa27.45■■□□□ 1.98
SHROOM1-204ENST00000440118 NHSQ6T4R5 1651 aa27.44■■□□□ 1.98
SHROOM1-204ENST00000440118 CARD14Q9BXL6 1004 aa27.44■■□□□ 1.98
SHROOM1-204ENST00000440118 CGNL1Q0VF96 1302 aa27.43■■□□□ 1.98
SHROOM1-204ENST00000440118 ANKRD26Q9UPS8 1709 aa27.41■■□□□ 1.98
SHROOM1-204ENST00000440118 FLT4P35916 1363 aa27.4■■□□□ 1.98
SHROOM1-204ENST00000440118 PLSCR1O15162 318 aa27.38■■□□□ 1.97
SHROOM1-204ENST00000440118 PTF1AQ7RTS3 328 aa27.38■■□□□ 1.97
SHROOM1-204ENST00000440118 ACSBG1Q96GR2 724 aa27.38■■□□□ 1.97
SHROOM1-204ENST00000440118 MAP2P11137 1827 aaKnown RBP27.37■■□□□ 1.97
SHROOM1-204ENST00000440118 KIF24Q5T7B8 1368 aa27.36■■□□□ 1.97
SHROOM1-204ENST00000440118 PPM1GO15355 546 aaPredicted RBP27.36■■□□□ 1.97
SHROOM1-204ENST00000440118 DDX54Q8TDD1 881 aaKnown RBP27.36■■□□□ 1.97
SHROOM1-204ENST00000440118 BTAF1O14981 1849 aa27.36■■□□□ 1.97
SHROOM1-204ENST00000440118 INSRP06213 1382 aa27.35■■□□□ 1.97
SHROOM1-204ENST00000440118 HSP90AB2PQ58FF8 381 aa27.34■■□□□ 1.97
SHROOM1-204ENST00000440118 MEGF6O75095 1541 aa27.33■■□□□ 1.97
SHROOM1-204ENST00000440118 USHBP1Q8N6Y0 703 aa27.33■■□□□ 1.97
SHROOM1-204ENST00000440118 DOT1LQ8TEK3 1739 aa27.33■■□□□ 1.96
SHROOM1-204ENST00000440118 KCNQ2O43526 872 aa27.32■■□□□ 1.96
SHROOM1-204ENST00000440118 RAPGEF4Q8WZA2 1011 aa27.32■■□□□ 1.96
SHROOM1-204ENST00000440118 EMILIN1Q9Y6C2 1016 aa27.32■■□□□ 1.96
SHROOM1-204ENST00000440118 SHANK3Q9BYB0 1731 aa27.32■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms