RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 SLC24A1O60721 1099 aa28.65■■■□□ 2.18
NCKIPSD-206ENST00000439518 NME9Q86XW9 330 aa28.65■■■□□ 2.18
NCKIPSD-206ENST00000439518 TERF2IPQ9NYB0 399 aa28.65■■■□□ 2.18
NCKIPSD-206ENST00000439518 EDC4Q6P2E9 1401 aaKnown RBP28.65■■■□□ 2.18
NCKIPSD-206ENST00000439518 TNS1Q9HBL0 1735 aaKnown RBP28.64■■■□□ 2.18
NCKIPSD-206ENST00000439518 EN1Q05925 392 aaPredicted RBP28.64■■■□□ 2.18
NCKIPSD-206ENST00000439518 USP54Q70EL1 1684 aa28.64■■■□□ 2.17
NCKIPSD-206ENST00000439518 A0A1W2PP64 1363 aa28.63■■■□□ 2.17
NCKIPSD-206ENST00000439518 PARP4Q9UKK3 1724 aaKnown RBP28.63■■■□□ 2.17
NCKIPSD-206ENST00000439518 TOM1L2Q6ZVM7 507 aa28.63■■■□□ 2.17
NCKIPSD-206ENST00000439518 TRIM37O94972 964 aa28.62■■■□□ 2.17
NCKIPSD-206ENST00000439518 NINLQ9Y2I6 1382 aa28.61■■■□□ 2.17
NCKIPSD-206ENST00000439518 ABCC6O95255 1503 aa28.6■■■□□ 2.17
NCKIPSD-206ENST00000439518 RGPD5Q99666 1765 aa28.58■■■□□ 2.17
NCKIPSD-206ENST00000439518 CARD10Q9BWT7 1032 aa28.58■■■□□ 2.17
NCKIPSD-206ENST00000439518 TIMELESSQ9UNS1 1208 aa28.58■■■□□ 2.17
NCKIPSD-206ENST00000439518 CLSPNQ9HAW4 1339 aa28.58■■■□□ 2.17
NCKIPSD-206ENST00000439518 USP47Q96K76 1375 aa28.58■■■□□ 2.17
NCKIPSD-206ENST00000439518 CAMKK2Q96RR4 588 aa28.56■■■□□ 2.16
NCKIPSD-206ENST00000439518 OVOS2A0A0J9YW53 1432 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 OVOS2Q6IE36 1432 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 APBA3O96018 575 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 CSB-PGBD3P0DP91 1061 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 EZH2Q15910 746 aaKnown RBP28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 CDCA7Q9BWT1 371 aaPredicted RBP28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 PCGF6Q9BYE7 350 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 LRRC37A3O60309 1634 aa28.54■■■□□ 2.16
NCKIPSD-206ENST00000439518 C11orf95C9JLR9 678 aaPredicted RBP28.53■■■□□ 2.16
NCKIPSD-206ENST00000439518 DDB1Q16531 1140 aa28.53■■■□□ 2.16
NCKIPSD-206ENST00000439518 TMF1P82094 1093 aa28.52■■■□□ 2.16
NCKIPSD-206ENST00000439518 PEAK1Q9H792 1746 aa28.52■■■□□ 2.16
NCKIPSD-206ENST00000439518 OVOS2A0A0G2JMS6 1433 aa28.52■■■□□ 2.16
NCKIPSD-206ENST00000439518 PARD3Q8TEW0 1356 aa28.5■■■□□ 2.15
NCKIPSD-206ENST00000439518 WNK3Q9BYP7 1800 aa28.5■■■□□ 2.15
NCKIPSD-206ENST00000439518 PSDA5PKW4 1024 aaPredicted RBP28.49■■■□□ 2.15
NCKIPSD-206ENST00000439518 ANKRD36BQ8N2N9 1353 aa28.49■■■□□ 2.15
NCKIPSD-206ENST00000439518 CCDC7Q96M83 1385 aa28.49■■■□□ 2.15
NCKIPSD-206ENST00000439518 ERBB3P21860 1342 aa28.48■■■□□ 2.15
NCKIPSD-206ENST00000439518 LTN1O94822 1766 aa28.47■■■□□ 2.15
NCKIPSD-206ENST00000439518 MARCH10Q8NA82 808 aaPredicted RBP28.46■■■□□ 2.15
NCKIPSD-206ENST00000439518 BCL9O00512 1426 aa28.43■■■□□ 2.14
NCKIPSD-206ENST00000439518 R3HDM1Q15032 1099 aaKnown RBP28.43■■■□□ 2.14
NCKIPSD-206ENST00000439518 COG3Q96JB2 828 aa28.43■■■□□ 2.14
NCKIPSD-206ENST00000439518 CDCA8Q53HL2 280 aa28.42■■■□□ 2.14
NCKIPSD-206ENST00000439518 ANKRD24Q8TF21 1146 aa28.42■■■□□ 2.14
NCKIPSD-206ENST00000439518 IP6K1Q92551 441 aa28.42■■■□□ 2.14
NCKIPSD-206ENST00000439518 NLRP2Q9NX02 1062 aa28.42■■■□□ 2.14
NCKIPSD-206ENST00000439518 EXOC5O00471 708 aa28.41■■■□□ 2.14
NCKIPSD-206ENST00000439518 RREB1Q92766 1687 aa28.41■■■□□ 2.14
NCKIPSD-206ENST00000439518 SBF2Q86WG5 1849 aa28.41■■■□□ 2.14
NCKIPSD-206ENST00000439518 BCL11BQ9C0K0 894 aaPredicted RBP28.39■■■□□ 2.14
NCKIPSD-206ENST00000439518 LRP5O75197 1615 aa28.39■■■□□ 2.13
NCKIPSD-206ENST00000439518 TNS2Q63HR2 1409 aa28.38■■■□□ 2.13
NCKIPSD-206ENST00000439518 PTF1AQ7RTS3 328 aa28.38■■■□□ 2.13
NCKIPSD-206ENST00000439518 FYB1O15117 783 aa28.37■■■□□ 2.13
NCKIPSD-206ENST00000439518 MAP3K19Q56UN5 1328 aa28.37■■■□□ 2.13
NCKIPSD-206ENST00000439518 NUP188Q5SRE5 1749 aa28.36■■■□□ 2.13
NCKIPSD-206ENST00000439518 PLSCR1O15162 318 aa28.36■■■□□ 2.13
NCKIPSD-206ENST00000439518 IL2RBP14784 551 aa28.35■■■□□ 2.13
NCKIPSD-206ENST00000439518 FBLN1P23142 703 aa28.35■■■□□ 2.13
NCKIPSD-206ENST00000439518 GGNBP2Q9H3C7 697 aa28.33■■■□□ 2.13
NCKIPSD-206ENST00000439518 HOXC9P31274 260 aa28.32■■■□□ 2.12
NCKIPSD-206ENST00000439518 RGPD3A6NKT7 1758 aaPredicted RBP28.32■■■□□ 2.12
NCKIPSD-206ENST00000439518 RGPD4Q7Z3J3 1758 aa28.32■■■□□ 2.12
NCKIPSD-206ENST00000439518 NBPF14Q5TI25 921 aa28.31■■■□□ 2.12
NCKIPSD-206ENST00000439518 CARD14Q9BXL6 1004 aa28.3■■■□□ 2.12
NCKIPSD-206ENST00000439518 MYOM1P52179 1685 aa28.29■■■□□ 2.12
NCKIPSD-206ENST00000439518 AMPHP49418 695 aa28.29■■■□□ 2.12
NCKIPSD-206ENST00000439518 CCER1Q8TC90 406 aaPredicted RBP28.29■■■□□ 2.12
NCKIPSD-206ENST00000439518 LTV1Q96GA3 475 aaPredicted RBP28.29■■■□□ 2.12
NCKIPSD-206ENST00000439518 FAM208AQ9UK61 1670 aaKnown RBP28.28■■■□□ 2.12
NCKIPSD-206ENST00000439518 RTL1A6NKG5 1358 aa28.27■■■□□ 2.12
NCKIPSD-206ENST00000439518 RRS1Q15050 365 aaKnown RBP28.26■■■□□ 2.11
NCKIPSD-206ENST00000439518 PROM2Q8N271 834 aa28.26■■■□□ 2.11
NCKIPSD-206ENST00000439518 KCNQ2O43526 872 aa28.25■■■□□ 2.11
NCKIPSD-206ENST00000439518 NSD3Q9BZ95 1437 aa28.23■■■□□ 2.11
NCKIPSD-206ENST00000439518 KIF20BQ96Q89 1820 aa28.22■■■□□ 2.11
NCKIPSD-206ENST00000439518 NHSQ6T4R5 1651 aa28.2■■■□□ 2.11
NCKIPSD-206ENST00000439518 ACSBG1Q96GR2 724 aa28.2■■■□□ 2.1
NCKIPSD-206ENST00000439518 EIF4G2P78344 907 aaKnown RBP eCLIP28.19■■■□□ 2.1
NCKIPSD-206ENST00000439518 ANO8Q9HCE9 1232 aaPredicted RBP28.19■■■□□ 2.1
NCKIPSD-206ENST00000439518 TXNRD1Q16881 649 aa28.18■■■□□ 2.1
NCKIPSD-206ENST00000439518 KIF24Q5T7B8 1368 aa28.17■■■□□ 2.1
NCKIPSD-206ENST00000439518 HSPA5P11021 654 aaKnown RBP28.17■■■□□ 2.1
NCKIPSD-206ENST00000439518 NBPF6Q5VWK0 638 aa28.17■■■□□ 2.1
NCKIPSD-206ENST00000439518 NBPF4Q96M43 638 aa28.17■■■□□ 2.1
NCKIPSD-206ENST00000439518 RGPD2P0DJD1 1756 aa28.16■■■□□ 2.1
NCKIPSD-206ENST00000439518 INSRP06213 1382 aa28.16■■■□□ 2.1
NCKIPSD-206ENST00000439518 HSP90AB2PQ58FF8 381 aa28.15■■■□□ 2.1
NCKIPSD-206ENST00000439518 DDX54Q8TDD1 881 aaKnown RBP28.15■■■□□ 2.1
NCKIPSD-206ENST00000439518 FLT4P35916 1363 aa28.14■■■□□ 2.1
NCKIPSD-206ENST00000439518 MEGF6O75095 1541 aa28.13■■■□□ 2.09
NCKIPSD-206ENST00000439518 SMG6Q86US8 1419 aaKnown RBP28.12■■■□□ 2.09
NCKIPSD-206ENST00000439518 CGNL1Q0VF96 1302 aa28.12■■■□□ 2.09
NCKIPSD-206ENST00000439518 ZCRB1Q8TBF4 217 aaKnown RBP28.11■■■□□ 2.09
NCKIPSD-206ENST00000439518 USHBP1Q8N6Y0 703 aa28.1■■■□□ 2.09
NCKIPSD-206ENST00000439518 POLR3GLQ9BT43 218 aa28.1■■■□□ 2.09
NCKIPSD-206ENST00000439518 EMILIN1Q9Y6C2 1016 aa28.1■■■□□ 2.09
NCKIPSD-206ENST00000439518 BTAF1O14981 1849 aa28.1■■■□□ 2.09
NCKIPSD-206ENST00000439518 KAT6BQ8WYB5 2073 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms