RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 GMPRP36959 345 aa9.73□□□□□ -0.85
PTPN4-205ENST00000433888 EMILIN1Q9Y6C2 1016 aa9.73□□□□□ -0.85
PTPN4-205ENST00000433888 ERBB4Q15303 1308 aa9.73□□□□□ -0.85
PTPN4-205ENST00000433888 C6orf118Q5T5N4 469 aa9.72□□□□□ -0.85
PTPN4-205ENST00000433888 LINC00528Q8N1L1 170 aa9.72□□□□□ -0.85
PTPN4-205ENST00000433888 IRF7Q92985 503 aa9.72□□□□□ -0.85
PTPN4-205ENST00000433888 GOPCQ9HD26 462 aa9.72□□□□□ -0.85
PTPN4-205ENST00000433888 HMX1Q9NP08 348 aaPredicted RBP9.72□□□□□ -0.85
PTPN4-205ENST00000433888 STK17AQ9UEE5 414 aa9.72□□□□□ -0.85
PTPN4-205ENST00000433888 RFC5P40937 340 aa9.71□□□□□ -0.86
PTPN4-205ENST00000433888 PPP1R26Q5T8A7 1209 aaPredicted RBP9.71□□□□□ -0.86
PTPN4-205ENST00000433888 SOS2Q07890 1332 aaPredicted RBP9.71□□□□□ -0.86
PTPN4-205ENST00000433888 USP17L8P0C7I0 530 aa9.7□□□□□ -0.86
PTPN4-205ENST00000433888 Q6ZVU0 165 aa9.7□□□□□ -0.86
PTPN4-205ENST00000433888 ZBTB33Q86T24 672 aa9.7□□□□□ -0.86
PTPN4-205ENST00000433888 KCTD15Q96SI1 283 aaPredicted RBP9.7□□□□□ -0.86
PTPN4-205ENST00000433888 CDV3Q9UKY7 258 aaKnown RBP9.7□□□□□ -0.86
PTPN4-205ENST00000433888 GPSM3Q9Y4H4 160 aa9.7□□□□□ -0.86
PTPN4-205ENST00000433888 BMP2P12643 396 aa9.69□□□□□ -0.86
PTPN4-205ENST00000433888 TSEN34Q9BSV6 310 aaKnown RBP9.69□□□□□ -0.86
PTPN4-205ENST00000433888 ATP1B4Q9UN42 357 aaPredicted RBP9.69□□□□□ -0.86
PTPN4-205ENST00000433888 PTK2Q05397 1052 aa9.68□□□□□ -0.86
PTPN4-205ENST00000433888 DNMT3LQ9UJW3 386 aa9.68□□□□□ -0.86
PTPN4-205ENST00000433888 MAN1A2O60476 641 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 UPP2O95045 317 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 VSIG8P0DPA2 414 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 CBLBQ13191 982 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 ADAM32Q8TC27 787 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 SLC10A4Q96EP9 437 aa9.67□□□□□ -0.86
PTPN4-205ENST00000433888 INTS6LQ5JSJ4 861 aaKnown RBP9.66□□□□□ -0.86
PTPN4-205ENST00000433888 TRIM34Q9BYJ4 488 aa9.66□□□□□ -0.86
PTPN4-205ENST00000433888 PGPEP1Q9NXJ5 209 aa9.66□□□□□ -0.86
PTPN4-205ENST00000433888 PPFIA3O75145 1194 aa9.64□□□□□ -0.87
PTPN4-205ENST00000433888 SPINT1O43278 529 aa9.63□□□□□ -0.87
PTPN4-205ENST00000433888 PCMTD1Q96MG8 357 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-205ENST00000433888 DHX9Q08211 1270 aaKnown RBP9.62□□□□□ -0.87
PTPN4-205ENST00000433888 NEUROD2Q15784 382 aa9.62□□□□□ -0.87
PTPN4-205ENST00000433888 TMEM259Q4ZIN3 620 aa9.62□□□□□ -0.87
PTPN4-205ENST00000433888 IL27Q8NEV9 243 aa9.62□□□□□ -0.87
PTPN4-205ENST00000433888 TTLL8A6PVC2 850 aa9.61□□□□□ -0.87
PTPN4-205ENST00000433888 ESPNB1AK53 854 aa9.61□□□□□ -0.87
PTPN4-205ENST00000433888 GJD4Q96KN9 370 aaPredicted RBP9.61□□□□□ -0.87
PTPN4-205ENST00000433888 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.6□□□□□ -0.87
PTPN4-205ENST00000433888 ZSCAN1Q8NBB4 408 aa9.6□□□□□ -0.87
PTPN4-205ENST00000433888 PNMA1Q8ND90 353 aa9.6□□□□□ -0.87
PTPN4-205ENST00000433888 TMPRSS4Q9NRS4 437 aa9.6□□□□□ -0.87
PTPN4-205ENST00000433888 BRPF1P55201 1214 aaPredicted RBP9.59□□□□□ -0.87
PTPN4-205ENST00000433888 AGBL1Q96MI9 1066 aa9.59□□□□□ -0.87
PTPN4-205ENST00000433888 FIGNL2A6NMB9 653 aa9.58□□□□□ -0.88
PTPN4-205ENST00000433888 LILRA1O75019 489 aa9.58□□□□□ -0.88
PTPN4-205ENST00000433888 ADD1P35611 737 aaKnown RBP9.58□□□□□ -0.88
PTPN4-205ENST00000433888 NBPF20Q3BBV1 942 aa9.58□□□□□ -0.88
PTPN4-205ENST00000433888 DZIP3Q86Y13 1208 aaKnown RBP9.58□□□□□ -0.88
PTPN4-205ENST00000433888 KDF1Q8NAX2 398 aaPredicted RBP9.58□□□□□ -0.88
PTPN4-205ENST00000433888 ERVH48-1M5A8F1 160 aa9.57□□□□□ -0.88
PTPN4-205ENST00000433888 PTSQ03393 145 aa9.57□□□□□ -0.88
PTPN4-205ENST00000433888 ZNF784Q8NCA9 323 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-205ENST00000433888 CTSOP43234 321 aaPredicted RBP9.56□□□□□ -0.88
PTPN4-205ENST00000433888 RELBQ01201 579 aa9.56□□□□□ -0.88
PTPN4-205ENST00000433888 GPR161Q8N6U8 529 aaKnown RBP9.56□□□□□ -0.88
PTPN4-205ENST00000433888 SLC35F4A4IF30 521 aa9.54□□□□□ -0.88
PTPN4-205ENST00000433888 INSM2Q96T92 566 aaPredicted RBP9.54□□□□□ -0.88
PTPN4-205ENST00000433888 ZBBXA8MT70 800 aa9.53□□□□□ -0.88
PTPN4-205ENST00000433888 ADH1AP07327 375 aa9.53□□□□□ -0.88
PTPN4-205ENST00000433888 RAB15P59190 212 aa9.53□□□□□ -0.88
PTPN4-205ENST00000433888 SEPT12Q8IYM1 358 aa9.53□□□□□ -0.88
PTPN4-205ENST00000433888 NANOS1Q8WY41 292 aaKnown RBP9.53□□□□□ -0.88
PTPN4-205ENST00000433888 FAM181BA6NEQ2 426 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 GPR37L1O60883 481 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 FBXO45P0C2W1 286 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 PTGIRP43119 386 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 CCDC155Q8N6L0 562 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 RNF217Q8TC41 542 aa9.52□□□□□ -0.89
PTPN4-205ENST00000433888 ZNF395Q9H8N7 513 aaPredicted RBP9.52□□□□□ -0.89
PTPN4-205ENST00000433888 GIGYF1O75420 1035 aaPredicted RBP9.51□□□□□ -0.89
PTPN4-205ENST00000433888 KRT76Q01546 638 aa9.51□□□□□ -0.89
PTPN4-205ENST00000433888 FOXD4L5Q5VV16 416 aaPredicted RBP9.5□□□□□ -0.89
PTPN4-205ENST00000433888 BANK1Q8NDB2 785 aa9.5□□□□□ -0.89
PTPN4-205ENST00000433888 SENP3-EIF4A1A0A087X0R7 540 aa9.49□□□□□ -0.89
PTPN4-205ENST00000433888 SOCS7O14512 581 aa9.49□□□□□ -0.89
PTPN4-205ENST00000433888 POLMQ9NP87 494 aaPredicted RBP9.48□□□□□ -0.89
PTPN4-205ENST00000433888 PCDHB9Q9Y5E1 797 aa9.48□□□□□ -0.89
PTPN4-205ENST00000433888 MTMR14Q8NCE2 650 aa9.47□□□□□ -0.89
PTPN4-205ENST00000433888 CYLDQ9NQC7 956 aa9.47□□□□□ -0.89
PTPN4-205ENST00000433888 ITGA6P23229 1130 aa9.46□□□□□ -0.9
PTPN4-205ENST00000433888 NR1H3Q13133 447 aa9.46□□□□□ -0.9
PTPN4-205ENST00000433888 SNRKQ9NRH2 765 aa9.45□□□□□ -0.9
PTPN4-205ENST00000433888 RNF144AP50876 292 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-205ENST00000433888 CCDC125Q86Z20 511 aa9.44□□□□□ -0.9
PTPN4-205ENST00000433888 VWA5B2Q8N398 1253 aa9.44□□□□□ -0.9
PTPN4-205ENST00000433888 CNTNAP3BQ96NU0 1288 aa9.44□□□□□ -0.9
PTPN4-205ENST00000433888 COL25A1Q9BXS0 654 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-205ENST00000433888 CNTNAP3Q9BZ76 1288 aa9.44□□□□□ -0.9
PTPN4-205ENST00000433888 MCCD1P59942 119 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-205ENST00000433888 ERVK-9P63128 1117 aa9.43□□□□□ -0.9
PTPN4-205ENST00000433888 RNFT1Q5M7Z0 435 aa9.43□□□□□ -0.9
PTPN4-205ENST00000433888 TPRNQ4KMQ1 711 aa9.42□□□□□ -0.9
PTPN4-205ENST00000433888 LYSMD3Q7Z3D4 306 aa9.42□□□□□ -0.9
PTPN4-205ENST00000433888 ATP5J2-PTCD1G3V325 749 aa9.41□□□□□ -0.9
PTPN4-205ENST00000433888 NDUFB9Q9Y6M9 179 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms