RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 BCL9LQ86UU0 1499 aa21.07■□□□□ 0.96
SHOX2-202ENST00000425436 AATKQ6ZMQ8 1374 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 COL18A1P39060 1754 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 PPM1GO15355 546 aaPredicted RBP21.06■□□□□ 0.96
SHOX2-202ENST00000425436 AMPHP49418 695 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 STRN4Q9NRL3 753 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 EMILIN1Q9Y6C2 1016 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 CAMTA1Q9Y6Y1 1673 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 NPC1L1Q9UHC9 1359 aa21.06■□□□□ 0.96
SHOX2-202ENST00000425436 EVA1CP58658 441 aa21.05■□□□□ 0.96
SHOX2-202ENST00000425436 UNC5CLQ8IV45 518 aa21.05■□□□□ 0.96
SHOX2-202ENST00000425436 ZNF772Q68DY9 489 aaPredicted RBP21.04■□□□□ 0.96
SHOX2-202ENST00000425436 POTEDQ86YR6 584 aa21.04■□□□□ 0.96
SHOX2-202ENST00000425436 POLKQ9UBT6 870 aa21.04■□□□□ 0.96
SHOX2-202ENST00000425436 LMO7Q8WWI1 1683 aa21.04■□□□□ 0.96
SHOX2-202ENST00000425436 QTRT2Q9H974 415 aaKnown RBP21.04■□□□□ 0.96
SHOX2-202ENST00000425436 NWD2Q9ULI1 1742 aa21.03■□□□□ 0.96
SHOX2-202ENST00000425436 POTEAQ6S8J7 498 aa21.03■□□□□ 0.96
SHOX2-202ENST00000425436 IP6K1Q92551 441 aa21.03■□□□□ 0.96
SHOX2-202ENST00000425436 HOXC9P31274 260 aa21.02■□□□□ 0.96
SHOX2-202ENST00000425436 HSP90AB2PQ58FF8 381 aa21.01■□□□□ 0.95
SHOX2-202ENST00000425436 LTV1Q96GA3 475 aaPredicted RBP21.01■□□□□ 0.95
SHOX2-202ENST00000425436 GTF3C3Q9Y5Q9 886 aa21.01■□□□□ 0.95
SHOX2-202ENST00000425436 NRAPQ86VF7 1730 aa21■□□□□ 0.95
SHOX2-202ENST00000425436 PEAK1Q9H792 1746 aa21■□□□□ 0.95
SHOX2-202ENST00000425436 RALBP1Q15311 655 aa21■□□□□ 0.95
SHOX2-202ENST00000425436 LARP1Q6PKG0 1096 aaKnown RBP21■□□□□ 0.95
SHOX2-202ENST00000425436 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
SHOX2-202ENST00000425436 TRPC5Q9UL62 973 aaPredicted RBP20.99■□□□□ 0.95
SHOX2-202ENST00000425436 COL5A2P05997 1499 aaPredicted RBP20.98■□□□□ 0.95
SHOX2-202ENST00000425436 CSB-PGBD3P0DP91 1061 aa20.98■□□□□ 0.95
SHOX2-202ENST00000425436 ANKRD24Q8TF21 1146 aa20.98■□□□□ 0.95
SHOX2-202ENST00000425436 MTHFSP49914 203 aa20.97■□□□□ 0.95
SHOX2-202ENST00000425436 VPS72Q15906 364 aa20.97■□□□□ 0.95
SHOX2-202ENST00000425436 USP35Q9P2H5 1018 aa20.97■□□□□ 0.95
SHOX2-202ENST00000425436 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.97■□□□□ 0.95
SHOX2-202ENST00000425436 ATRNO75882 1429 aa20.96■□□□□ 0.95
SHOX2-202ENST00000425436 MRS2Q9HD23 443 aa20.96■□□□□ 0.95
SHOX2-202ENST00000425436 FLT4P35916 1363 aa20.96■□□□□ 0.95
SHOX2-202ENST00000425436 TOM1L2Q6ZVM7 507 aa20.95■□□□□ 0.94
SHOX2-202ENST00000425436 GJD4Q96KN9 370 aaPredicted RBP20.95■□□□□ 0.94
SHOX2-202ENST00000425436 RTL1A6NKG5 1358 aa20.95■□□□□ 0.94
SHOX2-202ENST00000425436 BLMP54132 1417 aaPredicted RBP20.95■□□□□ 0.94
SHOX2-202ENST00000425436 MSH5O43196 834 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 PPP2R1AP30153 589 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 ABCC6O95255 1503 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 ERBB3P21860 1342 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 WDR17Q8IZU2 1322 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 PARD3Q8TEW0 1356 aa20.94■□□□□ 0.94
SHOX2-202ENST00000425436 INSRP06213 1382 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 KIF24Q5T7B8 1368 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 RXRBP28702 533 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 NLRP2Q9NX02 1062 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 SPATA31A5Q5VU36 1347 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 SPATA31A7Q8IWB4 1347 aa20.93■□□□□ 0.94
SHOX2-202ENST00000425436 RBM6P78332 1123 aaKnown RBP20.92■□□□□ 0.94
SHOX2-202ENST00000425436 SPATA31A1Q5TZJ5 1347 aa20.92■□□□□ 0.94
SHOX2-202ENST00000425436 RGPD2P0DJD1 1756 aa20.91■□□□□ 0.94
SHOX2-202ENST00000425436 SMG6Q86US8 1419 aaKnown RBP20.91■□□□□ 0.94
SHOX2-202ENST00000425436 CRB1P82279 1406 aa20.9■□□□□ 0.94
SHOX2-202ENST00000425436 GLI3P10071 1580 aa20.89■□□□□ 0.94
SHOX2-202ENST00000425436 MYBBP1AQ9BQG0 1328 aaKnown RBP20.89■□□□□ 0.94
SHOX2-202ENST00000425436 EIF4A2Q14240 407 aaKnown RBP20.88■□□□□ 0.93
SHOX2-202ENST00000425436 FAM98CQ17RN3 349 aaKnown RBP20.88■□□□□ 0.93
SHOX2-202ENST00000425436 NBPF6Q5VWK0 638 aa20.88■□□□□ 0.93
SHOX2-202ENST00000425436 NBPF4Q96M43 638 aa20.88■□□□□ 0.93
SHOX2-202ENST00000425436 CARD10Q9BWT7 1032 aa20.88■□□□□ 0.93
SHOX2-202ENST00000425436 CDK12Q9NYV4 1490 aaPredicted RBP20.87■□□□□ 0.93
SHOX2-202ENST00000425436 TCP11L2Q8N4U5 519 aa20.87■□□□□ 0.93
SHOX2-202ENST00000425436 USHBP1Q8N6Y0 703 aa20.87■□□□□ 0.93
SHOX2-202ENST00000425436 HNRNPUQ00839 825 aaKnown RBP eCLIP20.85■□□□□ 0.93
SHOX2-202ENST00000425436 A0A0G2JS52 829 aa20.84■□□□□ 0.93
SHOX2-202ENST00000425436 MYT1Q01538 1121 aa20.84■□□□□ 0.93
SHOX2-202ENST00000425436 EYA1Q99502 592 aa20.84■□□□□ 0.93
SHOX2-202ENST00000425436 IL13P35225 146 aa20.83■□□□□ 0.93
SHOX2-202ENST00000425436 CCDC184Q52MB2 194 aa20.83■□□□□ 0.93
SHOX2-202ENST00000425436 DIAPH1O60610 1272 aaKnown RBP20.83■□□□□ 0.92
SHOX2-202ENST00000425436 THRAP3Q9Y2W1 955 aaKnown RBP20.83■□□□□ 0.92
SHOX2-202ENST00000425436 FAM208AQ9UK61 1670 aaKnown RBP20.82■□□□□ 0.92
SHOX2-202ENST00000425436 ONECUT3O60422 494 aaPredicted RBP20.82■□□□□ 0.92
SHOX2-202ENST00000425436 BARGINQ6ZT62 677 aa20.82■□□□□ 0.92
SHOX2-202ENST00000425436 SEPT12Q8IYM1 358 aa20.82■□□□□ 0.92
SHOX2-202ENST00000425436 FAM9BQ8IZU0 186 aa20.82■□□□□ 0.92
SHOX2-202ENST00000425436 PIAS4Q8N2W9 510 aaPredicted RBP20.82■□□□□ 0.92
SHOX2-202ENST00000425436 CFAP53Q96M91 514 aa20.82■□□□□ 0.92
SHOX2-202ENST00000425436 ILDR2Q71H61 639 aa20.8■□□□□ 0.92
SHOX2-202ENST00000425436 COL3A1P02461 1466 aaPredicted RBP20.79■□□□□ 0.92
SHOX2-202ENST00000425436 RGS12O14924 1447 aa20.79■□□□□ 0.92
SHOX2-202ENST00000425436 U2SURPO15042 1029 aaKnown RBP20.78■□□□□ 0.92
SHOX2-202ENST00000425436 IL2RBP14784 551 aa20.78■□□□□ 0.92
SHOX2-202ENST00000425436 PNISRQ8TF01 805 aaKnown RBP20.78■□□□□ 0.92
SHOX2-202ENST00000425436 AEBP1Q8IUX7 1158 aa20.77■□□□□ 0.92
SHOX2-202ENST00000425436 IGSF1Q8N6C5 1336 aa20.76■□□□□ 0.91
SHOX2-202ENST00000425436 SULT6B1Q6IMI4 303 aa20.76■□□□□ 0.91
SHOX2-202ENST00000425436 BRWD3Q6RI45 1802 aa20.76■□□□□ 0.91
SHOX2-202ENST00000425436 ZBED9Q6R2W3 1325 aa20.76■□□□□ 0.91
SHOX2-202ENST00000425436 WNK3Q9BYP7 1800 aa20.75■□□□□ 0.91
SHOX2-202ENST00000425436 HMOX1P09601 288 aa20.75■□□□□ 0.91
SHOX2-202ENST00000425436 THSD7AQ9UPZ6 1657 aa20.75■□□□□ 0.91
SHOX2-202ENST00000425436 DISP2A7MBM2 1401 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms