RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 NINLQ9Y2I6 1382 aa17.43■□□□□ 0.38
HLA-DQB3-203ENST00000425319 HDGFL2Q7Z4V5 671 aaPredicted RBP17.43■□□□□ 0.38
HLA-DQB3-203ENST00000425319 AXIN2Q9Y2T1 843 aa17.43■□□□□ 0.38
HLA-DQB3-203ENST00000425319 NRKQ7Z2Y5 1582 aa17.42■□□□□ 0.38
HLA-DQB3-203ENST00000425319 KTN1Q86UP2 1357 aaKnown RBP17.41■□□□□ 0.38
HLA-DQB3-203ENST00000425319 CCDC7Q96M83 1385 aa17.41■□□□□ 0.38
HLA-DQB3-203ENST00000425319 TNS1Q9HBL0 1735 aaKnown RBP17.41■□□□□ 0.38
HLA-DQB3-203ENST00000425319 MARCH10Q8NA82 808 aaPredicted RBP17.41■□□□□ 0.38
HLA-DQB3-203ENST00000425319 TXNRD1Q16881 649 aa17.4■□□□□ 0.38
HLA-DQB3-203ENST00000425319 TMC1Q8TDI8 760 aa17.4■□□□□ 0.38
HLA-DQB3-203ENST00000425319 NLRP2Q9NX02 1062 aa17.4■□□□□ 0.38
HLA-DQB3-203ENST00000425319 SLC24A1O60721 1099 aa17.39■□□□□ 0.37
HLA-DQB3-203ENST00000425319 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.39■□□□□ 0.37
HLA-DQB3-203ENST00000425319 TOPAZ1Q8N9V7 1692 aa17.39■□□□□ 0.37
HLA-DQB3-203ENST00000425319 SLC15A2Q16348 729 aa17.38■□□□□ 0.37
HLA-DQB3-203ENST00000425319 TERF2IPQ9NYB0 399 aa17.38■□□□□ 0.37
HLA-DQB3-203ENST00000425319 CPSF1Q10570 1443 aaKnown RBP17.38■□□□□ 0.37
HLA-DQB3-203ENST00000425319 LMO7Q8WWI1 1683 aa17.37■□□□□ 0.37
HLA-DQB3-203ENST00000425319 ZBTB7AO95365 584 aa17.37■□□□□ 0.37
HLA-DQB3-203ENST00000425319 SIN3AQ96ST3 1273 aa17.37■□□□□ 0.37
HLA-DQB3-203ENST00000425319 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
HLA-DQB3-203ENST00000425319 BCL9O00512 1426 aa17.37■□□□□ 0.37
HLA-DQB3-203ENST00000425319 IL2RBP14784 551 aa17.36■□□□□ 0.37
HLA-DQB3-203ENST00000425319 CARD11Q9BXL7 1154 aa17.36■□□□□ 0.37
HLA-DQB3-203ENST00000425319 MTFR1LQ9H019 292 aa17.35■□□□□ 0.37
HLA-DQB3-203ENST00000425319 SLIT3O75094 1523 aa17.35■□□□□ 0.37
HLA-DQB3-203ENST00000425319 HMGB2P26583 209 aaKnown RBP17.34■□□□□ 0.37
HLA-DQB3-203ENST00000425319 PROM2Q8N271 834 aa17.34■□□□□ 0.37
HLA-DQB3-203ENST00000425319 PARP4Q9UKK3 1724 aaKnown RBP17.34■□□□□ 0.37
HLA-DQB3-203ENST00000425319 ANO8Q9HCE9 1232 aaPredicted RBP17.33■□□□□ 0.36
HLA-DQB3-203ENST00000425319 ACSBG1Q96GR2 724 aa17.32■□□□□ 0.36
HLA-DQB3-203ENST00000425319 ANKRD24Q8TF21 1146 aa17.31■□□□□ 0.36
HLA-DQB3-203ENST00000425319 RREB1Q92766 1687 aa17.3■□□□□ 0.36
HLA-DQB3-203ENST00000425319 QRICH2Q9H0J4 1663 aa17.3■□□□□ 0.36
HLA-DQB3-203ENST00000425319 PTF1AQ7RTS3 328 aa17.3■□□□□ 0.36
HLA-DQB3-203ENST00000425319 PUS7Q96PZ0 661 aaKnown RBP17.3■□□□□ 0.36
HLA-DQB3-203ENST00000425319 SYT17Q9BSW7 474 aa17.3■□□□□ 0.36
HLA-DQB3-203ENST00000425319 POLD1P28340 1107 aa17.29■□□□□ 0.36
HLA-DQB3-203ENST00000425319 SLC16A10Q8TF71 515 aa17.29■□□□□ 0.36
HLA-DQB3-203ENST00000425319 ARXQ96QS3 562 aa17.29■□□□□ 0.36
HLA-DQB3-203ENST00000425319 TRPM1Q7Z4N2 1603 aa17.29■□□□□ 0.36
HLA-DQB3-203ENST00000425319 USP31Q70CQ4 1352 aa17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 ERBB3P21860 1342 aa17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 NUP188Q5SRE5 1749 aa17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 NME9Q86XW9 330 aa17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 DDX54Q8TDD1 881 aaKnown RBP17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 FHDC1Q9C0D6 1143 aaPredicted RBP17.28■□□□□ 0.36
HLA-DQB3-203ENST00000425319 SLC27A3Q5K4L6 730 aa17.27■□□□□ 0.36
HLA-DQB3-203ENST00000425319 COG3Q96JB2 828 aa17.27■□□□□ 0.36
HLA-DQB3-203ENST00000425319 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
HLA-DQB3-203ENST00000425319 PTGER2P43116 358 aa17.26■□□□□ 0.35
HLA-DQB3-203ENST00000425319 AMPHP49418 695 aa17.26■□□□□ 0.35
HLA-DQB3-203ENST00000425319 SBNO2Q9Y2G9 1366 aa17.26■□□□□ 0.35
HLA-DQB3-203ENST00000425319 GPR162Q16538 588 aa17.25■□□□□ 0.35
HLA-DQB3-203ENST00000425319 IP6K1Q92551 441 aa17.25■□□□□ 0.35
HLA-DQB3-203ENST00000425319 SYTL4Q96C24 671 aaPredicted RBP17.25■□□□□ 0.35
HLA-DQB3-203ENST00000425319 PDGFDQ9GZP0 370 aaPredicted RBP17.25■□□□□ 0.35
HLA-DQB3-203ENST00000425319 TNS2Q63HR2 1409 aa17.24■□□□□ 0.35
HLA-DQB3-203ENST00000425319 LTV1Q96GA3 475 aaPredicted RBP17.24■□□□□ 0.35
HLA-DQB3-203ENST00000425319 TONSLQ96HA7 1378 aa17.24■□□□□ 0.35
HLA-DQB3-203ENST00000425319 ABCC6O95255 1503 aa17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 LRRC37A3O60309 1634 aa17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 KLHL34Q8N239 644 aa17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 TFCP2L1Q9NZI6 479 aa17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 RGPD3A6NKT7 1758 aaPredicted RBP17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 RGPD4Q7Z3J3 1758 aa17.23■□□□□ 0.35
HLA-DQB3-203ENST00000425319 PIK3C2AO00443 1686 aa17.22■□□□□ 0.35
HLA-DQB3-203ENST00000425319 EDC4Q6P2E9 1401 aaKnown RBP17.21■□□□□ 0.35
HLA-DQB3-203ENST00000425319 PEAK1Q9H792 1746 aa17.21■□□□□ 0.35
HLA-DQB3-203ENST00000425319 MSH5O43196 834 aa17.2■□□□□ 0.34
HLA-DQB3-203ENST00000425319 ZCRB1Q8TBF4 217 aaKnown RBP17.2■□□□□ 0.34
HLA-DQB3-203ENST00000425319 COL18A1P39060 1754 aa17.2■□□□□ 0.34
HLA-DQB3-203ENST00000425319 PELP1Q8IZL8 1130 aaKnown RBP17.19■□□□□ 0.34
HLA-DQB3-203ENST00000425319 ZNF784Q8NCA9 323 aaPredicted RBP17.19■□□□□ 0.34
HLA-DQB3-203ENST00000425319 PRIM1P49642 420 aaKnown RBP17.18■□□□□ 0.34
HLA-DQB3-203ENST00000425319 RAPGEF4Q8WZA2 1011 aa17.18■□□□□ 0.34
HLA-DQB3-203ENST00000425319 NFAT5O94916 1531 aa17.17■□□□□ 0.34
HLA-DQB3-203ENST00000425319 CDCA8Q53HL2 280 aa17.17■□□□□ 0.34
HLA-DQB3-203ENST00000425319 AKAP12Q02952 1782 aa17.16■□□□□ 0.34
HLA-DQB3-203ENST00000425319 SGIP1Q9BQI5 828 aa17.16■□□□□ 0.34
HLA-DQB3-203ENST00000425319 SBF2Q86WG5 1849 aa17.16■□□□□ 0.34
HLA-DQB3-203ENST00000425319 CGNL1Q0VF96 1302 aa17.16■□□□□ 0.34
HLA-DQB3-203ENST00000425319 GRIN3BO60391 1043 aa17.15■□□□□ 0.34
HLA-DQB3-203ENST00000425319 LRRC4BQ9NT99 713 aa17.15■□□□□ 0.34
HLA-DQB3-203ENST00000425319 TATP17735 454 aaPredicted RBP17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 HOXC9P31274 260 aa17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 TMF1P82094 1093 aa17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 FLAD1Q8NFF5 587 aa17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 AKT1S1Q96B36 256 aa17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 CCNL1Q9UK58 526 aaPredicted RBP17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 MAP3K5Q99683 1374 aa17.14■□□□□ 0.33
HLA-DQB3-203ENST00000425319 ST20-MTHFSA0A0A6YYL1 179 aa17.13■□□□□ 0.33
HLA-DQB3-203ENST00000425319 ZNF827Q17R98 1081 aa17.13■□□□□ 0.33
HLA-DQB3-203ENST00000425319 A0A1W2PP64 1363 aa17.13■□□□□ 0.33
HLA-DQB3-203ENST00000425319 USP47Q96K76 1375 aa17.13■□□□□ 0.33
HLA-DQB3-203ENST00000425319 SENP3-EIF4A1A0A087X0R7 540 aa17.12■□□□□ 0.33
HLA-DQB3-203ENST00000425319 ANKRD36BQ8N2N9 1353 aa17.12■□□□□ 0.33
HLA-DQB3-203ENST00000425319 SMG6Q86US8 1419 aaKnown RBP17.12■□□□□ 0.33
HLA-DQB3-203ENST00000425319 MAP3K19Q56UN5 1328 aa17.11■□□□□ 0.33
HLA-DQB3-203ENST00000425319 CASZ1Q86V15 1759 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms