RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 USHBP1Q8N6Y0 703 aa18.02■□□□□ 0.48
PRPF39-202ENST00000424478 PRDM11Q9NQV5 511 aa18.02■□□□□ 0.48
PRPF39-202ENST00000424478 HMOX1P09601 288 aa18.01■□□□□ 0.47
PRPF39-202ENST00000424478 EIF4A2Q14240 407 aaKnown RBP18.01■□□□□ 0.47
PRPF39-202ENST00000424478 SALL2Q9Y467 1007 aaPredicted RBP18.01■□□□□ 0.47
PRPF39-202ENST00000424478 CFAP53Q96M91 514 aa18.01■□□□□ 0.47
PRPF39-202ENST00000424478 COL3A1P02461 1466 aaPredicted RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 FAM83GA6ND36 823 aa18■□□□□ 0.47
PRPF39-202ENST00000424478 DIAPH1O60610 1272 aaKnown RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 U2AF1L5P0DN76 240 aaPredicted RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 U2AF1Q01081 240 aaKnown RBP eCLIP18■□□□□ 0.476e-6■■■□□ 14.7
PRPF39-202ENST00000424478 SHPRHQ149N8 1683 aa18■□□□□ 0.47
PRPF39-202ENST00000424478 WDR43Q15061 677 aaKnown RBP eCLIP17.99■□□□□ 0.479e-15■□□□□ 10.1
PRPF39-202ENST00000424478 AEBP1Q8IUX7 1158 aa17.99■□□□□ 0.47
PRPF39-202ENST00000424478 FLT4P35916 1363 aa17.99■□□□□ 0.47
PRPF39-202ENST00000424478 IL13P35225 146 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 STRN4Q9NRL3 753 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 CDK12Q9NYV4 1490 aaPredicted RBP17.97■□□□□ 0.47
PRPF39-202ENST00000424478 SMG6Q86US8 1419 aaKnown RBP17.97■□□□□ 0.47
PRPF39-202ENST00000424478 IP6K1Q92551 441 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 RGPD2P0DJD1 1756 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 ANKRD24Q8TF21 1146 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 JCADQ9P266 1359 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 USP35Q9P2H5 1018 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 C8orf37Q96NL8 207 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 BTG4Q9NY30 223 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 EYA1Q99502 592 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 LRP6O75581 1613 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 COL22A1Q8NFW1 1626 aaPredicted RBP17.93■□□□□ 0.46
PRPF39-202ENST00000424478 CSB-PGBD3P0DP91 1061 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 NBPF6Q5VWK0 638 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 NBPF4Q96M43 638 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 CAMTA1Q9Y6Y1 1673 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 SULT6B1Q6IMI4 303 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 RRP7AQ9Y3A4 280 aaKnown RBP17.93■□□□□ 0.46
PRPF39-202ENST00000424478 COL18A1P39060 1754 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 HNRNPUQ00839 825 aaKnown RBP eCLIP17.92■□□□□ 0.46
PRPF39-202ENST00000424478 INSRP06213 1382 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 NEUROD2Q15784 382 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 NLRP2Q9NX02 1062 aa17.91■□□□□ 0.46
PRPF39-202ENST00000424478 NUDCQ9Y266 331 aa17.91■□□□□ 0.46
PRPF39-202ENST00000424478 CPDO75976 1380 aa17.9■□□□□ 0.46
PRPF39-202ENST00000424478 ERBB3P21860 1342 aa17.9■□□□□ 0.46
PRPF39-202ENST00000424478 LARP1Q6PKG0 1096 aaKnown RBP17.9■□□□□ 0.46
PRPF39-202ENST00000424478 PRKAR2BP31323 418 aa17.89■□□□□ 0.46
PRPF39-202ENST00000424478 PHACTR3Q96KR7 559 aa17.89■□□□□ 0.45
PRPF39-202ENST00000424478 RTL1A6NKG5 1358 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 EVA1CP58658 441 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 FBXO41Q8TF61 875 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 NGLY1Q96IV0 654 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 APAF1O14727 1248 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 MEX3CQ5U5Q3 659 aaKnown RBP17.87■□□□□ 0.45
PRPF39-202ENST00000424478 TOM1L2Q6ZVM7 507 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 RSPH6AQ9H0K4 717 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 LMO7Q8WWI1 1683 aa17.86■□□□□ 0.45
PRPF39-202ENST00000424478 COL5A2P05997 1499 aaPredicted RBP17.86■□□□□ 0.45
PRPF39-202ENST00000424478 BLMP54132 1417 aaPredicted RBP17.85■□□□□ 0.45
PRPF39-202ENST00000424478 RGPD1P0DJD0 1748 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 IGSF1Q8N6C5 1336 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 PLCH1Q4KWH8 1693 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 CCDC9Q9Y3X0 531 aaKnown RBP17.84■□□□□ 0.45
PRPF39-202ENST00000424478 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 PLEKHF1Q96S99 279 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 SPATA31A6Q5VVP1 1343 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 COL14A1Q05707 1796 aaKnown RBP17.82■□□□□ 0.44
PRPF39-202ENST00000424478 WDR17Q8IZU2 1322 aa17.81■□□□□ 0.44
PRPF39-202ENST00000424478 RUNDC1Q96C34 613 aa17.8■□□□□ 0.44
PRPF39-202ENST00000424478 MAPK8IP3Q9UPT6 1336 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 FCHSD2O94868 740 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 AFF2P51816 1311 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 THUMPD2Q9BTF0 503 aaKnown RBP17.79■□□□□ 0.44
PRPF39-202ENST00000424478 EP400Q96L91 3159 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 DCTN1Q14203 1278 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 USP21Q9UK80 565 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 MTHFSDQ2M296 383 aaKnown RBP17.77■□□□□ 0.44
PRPF39-202ENST00000424478 MEGF6O75095 1541 aa17.77■□□□□ 0.44
PRPF39-202ENST00000424478 BCL9LQ86UU0 1499 aa17.77■□□□□ 0.44
PRPF39-202ENST00000424478 SLIT2O94813 1529 aa17.76■□□□□ 0.43
PRPF39-202ENST00000424478 KDRP35968 1356 aa17.76■□□□□ 0.43
PRPF39-202ENST00000424478 FAM208AQ9UK61 1670 aaKnown RBP17.76■□□□□ 0.43
PRPF39-202ENST00000424478 ILDR1Q86SU0 546 aaPredicted RBP17.76■□□□□ 0.43
PRPF39-202ENST00000424478 NRAPQ86VF7 1730 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 TMPOP42166 694 aaKnown RBP17.75■□□□□ 0.43
PRPF39-202ENST00000424478 RIPK4P57078 832 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 UNC5CLQ8IV45 518 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 CRB1P82279 1406 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 RAPGEF4Q8WZA2 1011 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 CDCA7LQ96GN5 454 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 CARD10Q9BWT7 1032 aa17.73■□□□□ 0.43
PRPF39-202ENST00000424478 FAM98CQ17RN3 349 aaKnown RBP17.73■□□□□ 0.43
PRPF39-202ENST00000424478 MCM10Q7L590 875 aa17.73■□□□□ 0.43
PRPF39-202ENST00000424478 FNBP4Q8N3X1 1017 aaPredicted RBP17.73■□□□□ 0.43
PRPF39-202ENST00000424478 DLG5Q8TDM6 1919 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 A0A0G2JS52 829 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 NEFMP07197 916 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 MYT1Q01538 1121 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 ABCC6O95255 1503 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.43
PRPF39-202ENST00000424478 TRIM35Q9UPQ4 493 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms