RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 USHBP1Q8N6Y0 703 aa18.02■□□□□ 0.48
PRPF39-202ENST00000424478 PRDM11Q9NQV5 511 aa18.02■□□□□ 0.48
PRPF39-202ENST00000424478 HMOX1P09601 288 aa18.01■□□□□ 0.47
PRPF39-202ENST00000424478 EIF4A2Q14240 407 aaKnown RBP18.01■□□□□ 0.47
PRPF39-202ENST00000424478 SALL2Q9Y467 1007 aaPredicted RBP18.01■□□□□ 0.47
PRPF39-202ENST00000424478 CFAP53Q96M91 514 aa18.01■□□□□ 0.47
PRPF39-202ENST00000424478 COL3A1P02461 1466 aaPredicted RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 FAM83GA6ND36 823 aa18■□□□□ 0.47
PRPF39-202ENST00000424478 DIAPH1O60610 1272 aaKnown RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 U2AF1L5P0DN76 240 aaPredicted RBP18■□□□□ 0.47
PRPF39-202ENST00000424478 U2AF1Q01081 240 aaKnown RBP eCLIP18■□□□□ 0.476e-6■■■□□ 14.7
PRPF39-202ENST00000424478 SHPRHQ149N8 1683 aa18■□□□□ 0.47
PRPF39-202ENST00000424478 WDR43Q15061 677 aaKnown RBP eCLIP17.99■□□□□ 0.479e-15■□□□□ 10.1
PRPF39-202ENST00000424478 AEBP1Q8IUX7 1158 aa17.99■□□□□ 0.47
PRPF39-202ENST00000424478 FLT4P35916 1363 aa17.99■□□□□ 0.47
PRPF39-202ENST00000424478 IL13P35225 146 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 STRN4Q9NRL3 753 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 CDK12Q9NYV4 1490 aaPredicted RBP17.97■□□□□ 0.47
PRPF39-202ENST00000424478 SMG6Q86US8 1419 aaKnown RBP17.97■□□□□ 0.47
PRPF39-202ENST00000424478 IP6K1Q92551 441 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 RGPD2P0DJD1 1756 aa17.97■□□□□ 0.47
PRPF39-202ENST00000424478 ANKRD24Q8TF21 1146 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 JCADQ9P266 1359 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 USP35Q9P2H5 1018 aa17.95■□□□□ 0.46
PRPF39-202ENST00000424478 C8orf37Q96NL8 207 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 BTG4Q9NY30 223 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 EYA1Q99502 592 aa17.94■□□□□ 0.46
PRPF39-202ENST00000424478 LRP6O75581 1613 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 COL22A1Q8NFW1 1626 aaPredicted RBP17.93■□□□□ 0.46
PRPF39-202ENST00000424478 CSB-PGBD3P0DP91 1061 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 NBPF6Q5VWK0 638 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 NBPF4Q96M43 638 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 CAMTA1Q9Y6Y1 1673 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 SULT6B1Q6IMI4 303 aa17.93■□□□□ 0.46
PRPF39-202ENST00000424478 RRP7AQ9Y3A4 280 aaKnown RBP17.93■□□□□ 0.46
PRPF39-202ENST00000424478 COL18A1P39060 1754 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 HNRNPUQ00839 825 aaKnown RBP eCLIP17.92■□□□□ 0.46
PRPF39-202ENST00000424478 INSRP06213 1382 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 NEUROD2Q15784 382 aa17.92■□□□□ 0.46
PRPF39-202ENST00000424478 NLRP2Q9NX02 1062 aa17.91■□□□□ 0.46
PRPF39-202ENST00000424478 NUDCQ9Y266 331 aa17.91■□□□□ 0.46
PRPF39-202ENST00000424478 CPDO75976 1380 aa17.9■□□□□ 0.46
PRPF39-202ENST00000424478 ERBB3P21860 1342 aa17.9■□□□□ 0.46
PRPF39-202ENST00000424478 LARP1Q6PKG0 1096 aaKnown RBP17.9■□□□□ 0.46
PRPF39-202ENST00000424478 PRKAR2BP31323 418 aa17.89■□□□□ 0.46
PRPF39-202ENST00000424478 PHACTR3Q96KR7 559 aa17.89■□□□□ 0.45
PRPF39-202ENST00000424478 RTL1A6NKG5 1358 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 EVA1CP58658 441 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 FBXO41Q8TF61 875 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 NGLY1Q96IV0 654 aa17.88■□□□□ 0.45
PRPF39-202ENST00000424478 APAF1O14727 1248 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 MEX3CQ5U5Q3 659 aaKnown RBP17.87■□□□□ 0.45
PRPF39-202ENST00000424478 TOM1L2Q6ZVM7 507 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 RSPH6AQ9H0K4 717 aa17.87■□□□□ 0.45
PRPF39-202ENST00000424478 LMO7Q8WWI1 1683 aa17.86■□□□□ 0.45
PRPF39-202ENST00000424478 COL5A2P05997 1499 aaPredicted RBP17.86■□□□□ 0.45
PRPF39-202ENST00000424478 BLMP54132 1417 aaPredicted RBP17.85■□□□□ 0.45
PRPF39-202ENST00000424478 RGPD1P0DJD0 1748 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 IGSF1Q8N6C5 1336 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 PLCH1Q4KWH8 1693 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 CCDC9Q9Y3X0 531 aaKnown RBP17.84■□□□□ 0.45
PRPF39-202ENST00000424478 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
PRPF39-202ENST00000424478 PLEKHF1Q96S99 279 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 SPATA31A6Q5VVP1 1343 aa17.83■□□□□ 0.44
PRPF39-202ENST00000424478 COL14A1Q05707 1796 aaKnown RBP17.82■□□□□ 0.44
PRPF39-202ENST00000424478 WDR17Q8IZU2 1322 aa17.81■□□□□ 0.44
PRPF39-202ENST00000424478 RUNDC1Q96C34 613 aa17.8■□□□□ 0.44
PRPF39-202ENST00000424478 MAPK8IP3Q9UPT6 1336 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 FCHSD2O94868 740 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 AFF2P51816 1311 aa17.79■□□□□ 0.44
PRPF39-202ENST00000424478 THUMPD2Q9BTF0 503 aaKnown RBP17.79■□□□□ 0.44
PRPF39-202ENST00000424478 EP400Q96L91 3159 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 DCTN1Q14203 1278 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 USP21Q9UK80 565 aa17.78■□□□□ 0.44
PRPF39-202ENST00000424478 MTHFSDQ2M296 383 aaKnown RBP17.77■□□□□ 0.44
PRPF39-202ENST00000424478 MEGF6O75095 1541 aa17.77■□□□□ 0.44
PRPF39-202ENST00000424478 BCL9LQ86UU0 1499 aa17.77■□□□□ 0.44
PRPF39-202ENST00000424478 SLIT2O94813 1529 aa17.76■□□□□ 0.43
PRPF39-202ENST00000424478 KDRP35968 1356 aa17.76■□□□□ 0.43
PRPF39-202ENST00000424478 FAM208AQ9UK61 1670 aaKnown RBP17.76■□□□□ 0.43
PRPF39-202ENST00000424478 ILDR1Q86SU0 546 aaPredicted RBP17.76■□□□□ 0.43
PRPF39-202ENST00000424478 NRAPQ86VF7 1730 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 TMPOP42166 694 aaKnown RBP17.75■□□□□ 0.43
PRPF39-202ENST00000424478 RIPK4P57078 832 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 UNC5CLQ8IV45 518 aa17.75■□□□□ 0.43
PRPF39-202ENST00000424478 CRB1P82279 1406 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 RAPGEF4Q8WZA2 1011 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 CDCA7LQ96GN5 454 aa17.74■□□□□ 0.43
PRPF39-202ENST00000424478 CARD10Q9BWT7 1032 aa17.73■□□□□ 0.43
PRPF39-202ENST00000424478 FAM98CQ17RN3 349 aaKnown RBP17.73■□□□□ 0.43
PRPF39-202ENST00000424478 MCM10Q7L590 875 aa17.73■□□□□ 0.43
PRPF39-202ENST00000424478 FNBP4Q8N3X1 1017 aaPredicted RBP17.73■□□□□ 0.43
PRPF39-202ENST00000424478 DLG5Q8TDM6 1919 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 A0A0G2JS52 829 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 NEFMP07197 916 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 MYT1Q01538 1121 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 ABCC6O95255 1503 aa17.72■□□□□ 0.43
PRPF39-202ENST00000424478 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.43
PRPF39-202ENST00000424478 TRIM35Q9UPQ4 493 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms