RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 USP6P35125 1406 aa24.33■■□□□ 1.49
CHCHD3-202ENST00000423635 CASZ1Q86V15 1759 aa24.33■■□□□ 1.49
CHCHD3-202ENST00000423635 SLIT3O75094 1523 aa24.33■■□□□ 1.49
CHCHD3-202ENST00000423635 LRRC37A3O60309 1634 aa24.33■■□□□ 1.48
CHCHD3-202ENST00000423635 AXIN2Q9Y2T1 843 aa24.33■■□□□ 1.48
CHCHD3-202ENST00000423635 CENPJQ9HC77 1338 aaPredicted RBP24.32■■□□□ 1.48
CHCHD3-202ENST00000423635 ZBTB7CA1YPR0 619 aa24.32■■□□□ 1.48
CHCHD3-202ENST00000423635 PTGER2P43116 358 aa24.32■■□□□ 1.48
CHCHD3-202ENST00000423635 WDR17Q8IZU2 1322 aa24.32■■□□□ 1.48
CHCHD3-202ENST00000423635 COL18A1P39060 1754 aa24.3■■□□□ 1.48
CHCHD3-202ENST00000423635 ZBTB7AO95365 584 aa24.29■■□□□ 1.48
CHCHD3-202ENST00000423635 TXNRD1Q16881 649 aa24.27■■□□□ 1.48
CHCHD3-202ENST00000423635 ARHGEF25Q86VW2 580 aa24.27■■□□□ 1.48
CHCHD3-202ENST00000423635 CARD10Q9BWT7 1032 aa24.27■■□□□ 1.48
CHCHD3-202ENST00000423635 UTRNP46939 3433 aa24.26■■□□□ 1.47
CHCHD3-202ENST00000423635 SLC15A2Q16348 729 aa24.26■■□□□ 1.47
CHCHD3-202ENST00000423635 ZNF784Q8NCA9 323 aaPredicted RBP24.25■■□□□ 1.47
CHCHD3-202ENST00000423635 STK32BQ9NY57 414 aa24.25■■□□□ 1.47
CHCHD3-202ENST00000423635 ATF5Q9Y2D1 282 aaPredicted RBP24.25■■□□□ 1.47
CHCHD3-202ENST00000423635 EXOC5O00471 708 aa24.24■■□□□ 1.47
CHCHD3-202ENST00000423635 KCNH5Q8NCM2 988 aa24.24■■□□□ 1.47
CHCHD3-202ENST00000423635 SYT17Q9BSW7 474 aa24.24■■□□□ 1.47
CHCHD3-202ENST00000423635 CPSF1Q10570 1443 aaKnown RBP24.24■■□□□ 1.47
CHCHD3-202ENST00000423635 ZNF692Q9BU19 519 aaPredicted RBP24.23■■□□□ 1.47
CHCHD3-202ENST00000423635 PIK3C2AO00443 1686 aa24.22■■□□□ 1.47
CHCHD3-202ENST00000423635 WNK3Q9BYP7 1800 aa24.22■■□□□ 1.47
CHCHD3-202ENST00000423635 SGIP1Q9BQI5 828 aa24.21■■□□□ 1.47
CHCHD3-202ENST00000423635 FHDC1Q9C0D6 1143 aaPredicted RBP24.21■■□□□ 1.47
CHCHD3-202ENST00000423635 MTFR1LQ9H019 292 aa24.21■■□□□ 1.47
CHCHD3-202ENST00000423635 MYOM1P52179 1685 aa24.21■■□□□ 1.47
CHCHD3-202ENST00000423635 TTC21BQ7Z4L5 1316 aa24.2■■□□□ 1.46
CHCHD3-202ENST00000423635 AKAP12Q02952 1782 aa24.19■■□□□ 1.46
CHCHD3-202ENST00000423635 EVC2Q86UK5 1308 aa24.19■■□□□ 1.46
CHCHD3-202ENST00000423635 CSB-PGBD3P0DP91 1061 aa24.18■■□□□ 1.46
CHCHD3-202ENST00000423635 CCDC7Q96M83 1385 aa24.17■■□□□ 1.46
CHCHD3-202ENST00000423635 QRICH2Q9H0J4 1663 aa24.17■■□□□ 1.46
CHCHD3-202ENST00000423635 TTC21AQ8NDW8 1320 aa24.16■■□□□ 1.46
CHCHD3-202ENST00000423635 RGPD5Q99666 1765 aa24.14■■□□□ 1.46
CHCHD3-202ENST00000423635 SOX12O15370 315 aa24.12■■□□□ 1.45
CHCHD3-202ENST00000423635 TNS2Q63HR2 1409 aa24.12■■□□□ 1.45
CHCHD3-202ENST00000423635 TRPM1Q7Z4N2 1603 aa24.11■■□□□ 1.45
CHCHD3-202ENST00000423635 ARXQ96QS3 562 aa24.11■■□□□ 1.45
CHCHD3-202ENST00000423635 MAP3K5Q99683 1374 aa24.11■■□□□ 1.45
CHCHD3-202ENST00000423635 NFAT5O94916 1531 aa24.1■■□□□ 1.45
CHCHD3-202ENST00000423635 ABCC6O95255 1503 aa24.1■■□□□ 1.45
CHCHD3-202ENST00000423635 CHD4Q14839 1912 aa24.09■■□□□ 1.45
CHCHD3-202ENST00000423635 NHSQ6T4R5 1651 aa24.08■■□□□ 1.44
CHCHD3-202ENST00000423635 C1QTNF8P60827 252 aa24.08■■□□□ 1.44
CHCHD3-202ENST00000423635 ACSBG1Q96GR2 724 aa24.08■■□□□ 1.44
CHCHD3-202ENST00000423635 L3MBTL2Q969R5 705 aa24.06■■□□□ 1.44
CHCHD3-202ENST00000423635 IL2RBP14784 551 aa24.05■■□□□ 1.44
CHCHD3-202ENST00000423635 ERBB3P21860 1342 aa24.05■■□□□ 1.44
CHCHD3-202ENST00000423635 PAPPAQ13219 1627 aa24.05■■□□□ 1.44
CHCHD3-202ENST00000423635 USP31Q70CQ4 1352 aa24.05■■□□□ 1.44
CHCHD3-202ENST00000423635 KTN1Q86UP2 1357 aaKnown RBP24.05■■□□□ 1.44
CHCHD3-202ENST00000423635 SENP3-EIF4A1A0A087X0R7 540 aa24.03■■□□□ 1.44
CHCHD3-202ENST00000423635 ZNF827Q17R98 1081 aa24.03■■□□□ 1.44
CHCHD3-202ENST00000423635 LRRC4BQ9NT99 713 aa24.03■■□□□ 1.44
CHCHD3-202ENST00000423635 NLRP2Q9NX02 1062 aa24.03■■□□□ 1.44
CHCHD3-202ENST00000423635 SLC16A10Q8TF71 515 aa24.02■■□□□ 1.44
CHCHD3-202ENST00000423635 AKT1S1Q96B36 256 aa24■■□□□ 1.43
CHCHD3-202ENST00000423635 GPR162Q16538 588 aa23.99■■□□□ 1.43
CHCHD3-202ENST00000423635 SLC27A3Q5K4L6 730 aa23.98■■□□□ 1.43
CHCHD3-202ENST00000423635 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.98■■□□□ 1.439e-7■■■■□ 19.7
CHCHD3-202ENST00000423635 BTAF1O14981 1849 aa23.97■■□□□ 1.43
CHCHD3-202ENST00000423635 ANKRD24Q8TF21 1146 aa23.97■■□□□ 1.43
CHCHD3-202ENST00000423635 ROCK2O75116 1388 aaKnown RBP23.97■■□□□ 1.43
CHCHD3-202ENST00000423635 USP54Q70EL1 1684 aa23.95■■□□□ 1.42
CHCHD3-202ENST00000423635 NME9Q86XW9 330 aa23.95■■□□□ 1.42
CHCHD3-202ENST00000423635 MON2Q7Z3U7 1717 aa23.95■■□□□ 1.42
CHCHD3-202ENST00000423635 SBNO2Q9Y2G9 1366 aa23.94■■□□□ 1.42
CHCHD3-202ENST00000423635 POLD1P28340 1107 aa23.93■■□□□ 1.42
CHCHD3-202ENST00000423635 KAT6BQ8WYB5 2073 aa23.92■■□□□ 1.42
CHCHD3-202ENST00000423635 CD163L1Q9NR16 1453 aa23.92■■□□□ 1.42
CHCHD3-202ENST00000423635 COL24A1Q17RW2 1714 aa23.92■■□□□ 1.42
CHCHD3-202ENST00000423635 PNPLA7Q6ZV29 1317 aa23.92■■□□□ 1.42
CHCHD3-202ENST00000423635 GOLGB1Q14789 3259 aaKnown RBP23.91■■□□□ 1.42
CHCHD3-202ENST00000423635 QSER1Q2KHR3 1735 aa23.9■■□□□ 1.42
CHCHD3-202ENST00000423635 LTN1O94822 1766 aa23.89■■□□□ 1.42
CHCHD3-202ENST00000423635 GIGYF1O75420 1035 aaPredicted RBP23.89■■□□□ 1.42
CHCHD3-202ENST00000423635 SIN3AQ96ST3 1273 aa23.89■■□□□ 1.42
CHCHD3-202ENST00000423635 DDX54Q8TDD1 881 aaKnown RBP23.88■■□□□ 1.41
CHCHD3-202ENST00000423635 IP6K1Q92551 441 aa23.88■■□□□ 1.41
CHCHD3-202ENST00000423635 HDGFL2Q7Z4V5 671 aaPredicted RBP23.87■■□□□ 1.41
CHCHD3-202ENST00000423635 TFCP2L1Q9NZI6 479 aa23.87■■□□□ 1.41
CHCHD3-202ENST00000423635 KLHL34Q8N239 644 aa23.86■■□□□ 1.41
CHCHD3-202ENST00000423635 SLC12A5Q9H2X9 1139 aa23.86■■□□□ 1.41
CHCHD3-202ENST00000423635 NLGN2Q8NFZ4 835 aa23.85■■□□□ 1.41
CHCHD3-202ENST00000423635 TMC1Q8TDI8 760 aa23.85■■□□□ 1.41
CHCHD3-202ENST00000423635 EDC4Q6P2E9 1401 aaKnown RBP23.85■■□□□ 1.41
CHCHD3-202ENST00000423635 PRIM1P49642 420 aaKnown RBP23.84■■□□□ 1.41
CHCHD3-202ENST00000423635 ANKRD36BQ8N2N9 1353 aa23.84■■□□□ 1.41
CHCHD3-202ENST00000423635 KCNQ4P56696 695 aa23.84■■□□□ 1.41
CHCHD3-202ENST00000423635 PELP1Q8IZL8 1130 aaKnown RBP23.84■■□□□ 1.41
CHCHD3-202ENST00000423635 GRIN3BO60391 1043 aa23.83■■□□□ 1.4
CHCHD3-202ENST00000423635 IFFO2Q5TF58 517 aa23.83■■□□□ 1.4
CHCHD3-202ENST00000423635 PUS7Q96PZ0 661 aaKnown RBP23.82■■□□□ 1.4
CHCHD3-202ENST00000423635 TERF2IPQ9NYB0 399 aa23.82■■□□□ 1.4
CHCHD3-202ENST00000423635 SYTL4Q96C24 671 aaPredicted RBP23.81■■□□□ 1.4
CHCHD3-202ENST00000423635 NSD2O96028 1365 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms