RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 WDR17Q8IZU2 1322 aa11.63□□□□□ -0.55
VIM-202ENST00000421459 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.63□□□□□ -0.55
VIM-202ENST00000421459 BCL11BQ9C0K0 894 aaPredicted RBP11.63□□□□□ -0.55
VIM-202ENST00000421459 SPON1Q9HCB6 807 aa11.63□□□□□ -0.55
VIM-202ENST00000421459 PPP1R1BQ9UD71 204 aaPredicted RBP11.63□□□□□ -0.55
VIM-202ENST00000421459 ROCK2O75116 1388 aaKnown RBP11.63□□□□□ -0.55
VIM-202ENST00000421459 PEAK1Q9H792 1746 aa11.63□□□□□ -0.55
VIM-202ENST00000421459 PARP4Q9UKK3 1724 aaKnown RBP11.63□□□□□ -0.55
VIM-202ENST00000421459 CPSF1Q10570 1443 aaKnown RBP11.62□□□□□ -0.55
VIM-202ENST00000421459 COL18A1P39060 1754 aa11.62□□□□□ -0.55
VIM-202ENST00000421459 LRRC37A3O60309 1634 aa11.62□□□□□ -0.55
VIM-202ENST00000421459 PLSCR1O15162 318 aa11.62□□□□□ -0.55
VIM-202ENST00000421459 ZNF692Q9BU19 519 aaPredicted RBP11.62□□□□□ -0.55
VIM-202ENST00000421459 ZBTB7AO95365 584 aa11.61□□□□□ -0.55
VIM-202ENST00000421459 KCNH5Q8NCM2 988 aa11.61□□□□□ -0.55
VIM-202ENST00000421459 CARD10Q9BWT7 1032 aa11.61□□□□□ -0.55
VIM-202ENST00000421459 KTN1Q86UP2 1357 aaKnown RBP11.61□□□□□ -0.55
VIM-202ENST00000421459 EXOC5O00471 708 aa11.6□□□□□ -0.55
VIM-202ENST00000421459 YY1P25490 414 aa11.6□□□□□ -0.55
VIM-202ENST00000421459 NME9Q86XW9 330 aa11.6□□□□□ -0.55
VIM-202ENST00000421459 ACSBG1Q96GR2 724 aa11.6□□□□□ -0.55
VIM-202ENST00000421459 ATF5Q9Y2D1 282 aaPredicted RBP11.6□□□□□ -0.55
VIM-202ENST00000421459 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
VIM-202ENST00000421459 C11orf95C9JLR9 678 aaPredicted RBP11.59□□□□□ -0.55
VIM-202ENST00000421459 TXNRD1Q16881 649 aa11.59□□□□□ -0.55
VIM-202ENST00000421459 TTC21AQ8NDW8 1320 aa11.59□□□□□ -0.55
VIM-202ENST00000421459 TMC1Q8TDI8 760 aa11.58□□□□□ -0.56
VIM-202ENST00000421459 SLC12A5Q9H2X9 1139 aa11.58□□□□□ -0.56
VIM-202ENST00000421459 NLRP2Q9NX02 1062 aa11.58□□□□□ -0.56
VIM-202ENST00000421459 NFAT5O94916 1531 aa11.58□□□□□ -0.56
VIM-202ENST00000421459 UTRNP46939 3433 aa11.57□□□□□ -0.56
VIM-202ENST00000421459 PTGER2P43116 358 aa11.57□□□□□ -0.56
VIM-202ENST00000421459 CDCA7Q9BWT1 371 aaPredicted RBP11.57□□□□□ -0.56
VIM-202ENST00000421459 CARD11Q9BXL7 1154 aa11.56□□□□□ -0.56
VIM-202ENST00000421459 RGPD5Q99666 1765 aa11.56□□□□□ -0.56
VIM-202ENST00000421459 CD163L1Q9NR16 1453 aa11.56□□□□□ -0.56
VIM-202ENST00000421459 SBNO2Q9Y2G9 1366 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 FBLN1P23142 703 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 SLC15A2Q16348 729 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 ANKRD24Q8TF21 1146 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 STK32BQ9NY57 414 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 SBF2Q86WG5 1849 aa11.55□□□□□ -0.56
VIM-202ENST00000421459 BCL9O00512 1426 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 ERBB3P21860 1342 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 AKAP12Q02952 1782 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 USP31Q70CQ4 1352 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 CCDC7Q96M83 1385 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 NINLQ9Y2I6 1382 aa11.54□□□□□ -0.56
VIM-202ENST00000421459 LTV1Q96GA3 475 aaPredicted RBP11.53□□□□□ -0.56
VIM-202ENST00000421459 CASZ1Q86V15 1759 aa11.53□□□□□ -0.56
VIM-202ENST00000421459 WNK3Q9BYP7 1800 aa11.53□□□□□ -0.56
VIM-202ENST00000421459 TNS2Q63HR2 1409 aa11.52□□□□□ -0.56
VIM-202ENST00000421459 IL2RBP14784 551 aa11.52□□□□□ -0.57
VIM-202ENST00000421459 ZNF827Q17R98 1081 aa11.52□□□□□ -0.57
VIM-202ENST00000421459 HDGFL2Q7Z4V5 671 aaPredicted RBP11.52□□□□□ -0.57
VIM-202ENST00000421459 FHDC1Q9C0D6 1143 aaPredicted RBP11.52□□□□□ -0.57
VIM-202ENST00000421459 LRRC4BQ9NT99 713 aa11.52□□□□□ -0.57
VIM-202ENST00000421459 DCAF8L1A6NGE4 600 aa11.51□□□□□ -0.57
VIM-202ENST00000421459 KCNQ4P56696 695 aa11.51□□□□□ -0.57
VIM-202ENST00000421459 DDX54Q8TDD1 881 aaKnown RBP11.51□□□□□ -0.57
VIM-202ENST00000421459 SGIP1Q9BQI5 828 aa11.51□□□□□ -0.57
VIM-202ENST00000421459 SYT17Q9BSW7 474 aa11.51□□□□□ -0.57
VIM-202ENST00000421459 A0A1W2PP64 1363 aa11.51□□□□□ -0.57
VIM-202ENST00000421459 RGPD3A6NKT7 1758 aaPredicted RBP11.5□□□□□ -0.57
VIM-202ENST00000421459 RGPD4Q7Z3J3 1758 aa11.5□□□□□ -0.57
VIM-202ENST00000421459 MYOM1P52179 1685 aa11.49□□□□□ -0.57
VIM-202ENST00000421459 MON2Q7Z3U7 1717 aa11.49□□□□□ -0.57
VIM-202ENST00000421459 IP6K1Q92551 441 aa11.49□□□□□ -0.57
VIM-202ENST00000421459 MTFR1LQ9H019 292 aa11.49□□□□□ -0.57
VIM-202ENST00000421459 ST20-MTHFSA0A0A6YYL1 179 aa11.48□□□□□ -0.57
VIM-202ENST00000421459 TESK2Q96S53 571 aa11.48□□□□□ -0.57
VIM-202ENST00000421459 TERF2IPQ9NYB0 399 aa11.48□□□□□ -0.57
VIM-202ENST00000421459 EDC4Q6P2E9 1401 aaKnown RBP11.48□□□□□ -0.57
VIM-202ENST00000421459 SYTL4Q96C24 671 aaPredicted RBP11.47□□□□□ -0.57
VIM-202ENST00000421459 ARXQ96QS3 562 aa11.47□□□□□ -0.57
VIM-202ENST00000421459 NHSQ6T4R5 1651 aa11.46□□□□□ -0.57
VIM-202ENST00000421459 ABCC6O95255 1503 aa11.46□□□□□ -0.57
VIM-202ENST00000421459 TONSLQ96HA7 1378 aa11.46□□□□□ -0.57
VIM-202ENST00000421459 MAP3K19Q56UN5 1328 aa11.46□□□□□ -0.57
VIM-202ENST00000421459 PRIM1P49642 420 aaKnown RBP11.46□□□□□ -0.57
VIM-202ENST00000421459 AKT1S1Q96B36 256 aa11.46□□□□□ -0.57
VIM-202ENST00000421459 GOLGB1Q14789 3259 aaKnown RBP11.45□□□□□ -0.58
VIM-202ENST00000421459 HOXC9P31274 260 aa11.45□□□□□ -0.58
VIM-202ENST00000421459 RRS1Q15050 365 aaKnown RBP11.45□□□□□ -0.58
VIM-202ENST00000421459 USHBP1Q8N6Y0 703 aa11.45□□□□□ -0.58
VIM-202ENST00000421459 ZNF784Q8NCA9 323 aaPredicted RBP11.45□□□□□ -0.58
VIM-202ENST00000421459 LTN1O94822 1766 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 AMPHP49418 695 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 KLHL34Q8N239 644 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 COG3Q96JB2 828 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 GGNBP2Q9H3C7 697 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 PAPPAQ13219 1627 aa11.44□□□□□ -0.58
VIM-202ENST00000421459 USP54Q70EL1 1684 aa11.43□□□□□ -0.58
VIM-202ENST00000421459 PNPLA7Q6ZV29 1317 aa11.43□□□□□ -0.58
VIM-202ENST00000421459 NBPF6Q5VWK0 638 aa11.43□□□□□ -0.58
VIM-202ENST00000421459 NBPF4Q96M43 638 aa11.43□□□□□ -0.58
VIM-202ENST00000421459 PUS7Q96PZ0 661 aaKnown RBP11.43□□□□□ -0.58
VIM-202ENST00000421459 BTAF1O14981 1849 aa11.42□□□□□ -0.58
VIM-202ENST00000421459 ZCRB1Q8TBF4 217 aaKnown RBP11.42□□□□□ -0.58
VIM-202ENST00000421459 TFCP2L1Q9NZI6 479 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms