RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.05■■■□□ 2.4
PTPN4-202ENST00000420482 NUP188Q5SRE5 1749 aa30.05■■■□□ 2.4
PTPN4-202ENST00000420482 PARD3Q8TEW0 1356 aa30.03■■■□□ 2.4
PTPN4-202ENST00000420482 WDR17Q8IZU2 1322 aa30.03■■■□□ 2.4
PTPN4-202ENST00000420482 TRIM37O94972 964 aa30.02■■■□□ 2.4
PTPN4-202ENST00000420482 EZH2Q15910 746 aaKnown RBP30.02■■■□□ 2.4
PTPN4-202ENST00000420482 NINLQ9Y2I6 1382 aa30.02■■■□□ 2.4
PTPN4-202ENST00000420482 WNK3Q9BYP7 1800 aa30.01■■■□□ 2.4
PTPN4-202ENST00000420482 ST20-MTHFSA0A0A6YYL1 179 aa30.01■■■□□ 2.39
PTPN4-202ENST00000420482 CSB-PGBD3P0DP91 1061 aa30.01■■■□□ 2.39
PTPN4-202ENST00000420482 CAMKK2Q96RR4 588 aa30.01■■■□□ 2.39
PTPN4-202ENST00000420482 SLC12A5Q9H2X9 1139 aa30.01■■■□□ 2.39
PTPN4-202ENST00000420482 EDC4Q6P2E9 1401 aaKnown RBP30.01■■■□□ 2.39
PTPN4-202ENST00000420482 USP31Q70CQ4 1352 aa30.01■■■□□ 2.39
PTPN4-202ENST00000420482 COL18A1P39060 1754 aa30■■■□□ 2.39
PTPN4-202ENST00000420482 CDCA7Q9BWT1 371 aaPredicted RBP30■■■□□ 2.39
PTPN4-202ENST00000420482 CD163L1Q9NR16 1453 aa29.99■■■□□ 2.39
PTPN4-202ENST00000420482 R3HDM1Q15032 1099 aaKnown RBP29.99■■■□□ 2.39
PTPN4-202ENST00000420482 AXIN2Q9Y2T1 843 aa29.99■■■□□ 2.39
PTPN4-202ENST00000420482 ABCC6O95255 1503 aa29.99■■■□□ 2.39
PTPN4-202ENST00000420482 NFAT5O94916 1531 aa29.97■■■□□ 2.39
PTPN4-202ENST00000420482 PEAK1Q9H792 1746 aa29.97■■■□□ 2.39
PTPN4-202ENST00000420482 APBA3O96018 575 aa29.97■■■□□ 2.39
PTPN4-202ENST00000420482 DDB1Q16531 1140 aa29.97■■■□□ 2.39
PTPN4-202ENST00000420482 LRRC37A3O60309 1634 aa29.96■■■□□ 2.39
PTPN4-202ENST00000420482 SBF2Q86WG5 1849 aa29.96■■■□□ 2.39
PTPN4-202ENST00000420482 USP54Q70EL1 1684 aa29.96■■■□□ 2.39
PTPN4-202ENST00000420482 NME9Q86XW9 330 aa29.96■■■□□ 2.39
PTPN4-202ENST00000420482 TESK2Q96S53 571 aa29.96■■■□□ 2.39
PTPN4-202ENST00000420482 A0A1W2PP64 1363 aa29.95■■■□□ 2.39
PTPN4-202ENST00000420482 TIMELESSQ9UNS1 1208 aa29.95■■■□□ 2.39
PTPN4-202ENST00000420482 RGPD3A6NKT7 1758 aaPredicted RBP29.94■■■□□ 2.38
PTPN4-202ENST00000420482 RGPD4Q7Z3J3 1758 aa29.94■■■□□ 2.38
PTPN4-202ENST00000420482 OVOS2A0A0G2JMS6 1433 aa29.94■■■□□ 2.38
PTPN4-202ENST00000420482 OVOS2A0A0J9YW53 1432 aa29.94■■■□□ 2.38
PTPN4-202ENST00000420482 OVOS2Q6IE36 1432 aa29.94■■■□□ 2.38
PTPN4-202ENST00000420482 CARD10Q9BWT7 1032 aa29.93■■■□□ 2.38
PTPN4-202ENST00000420482 CLSPNQ9HAW4 1339 aa29.93■■■□□ 2.38
PTPN4-202ENST00000420482 RGPD5Q99666 1765 aa29.92■■■□□ 2.38
PTPN4-202ENST00000420482 TMF1P82094 1093 aa29.91■■■□□ 2.38
PTPN4-202ENST00000420482 CCDC7Q96M83 1385 aa29.9■■■□□ 2.38
PTPN4-202ENST00000420482 USP47Q96K76 1375 aa29.9■■■□□ 2.38
PTPN4-202ENST00000420482 CDCA8Q53HL2 280 aa29.88■■■□□ 2.37
PTPN4-202ENST00000420482 PCGF6Q9BYE7 350 aa29.86■■■□□ 2.37
PTPN4-202ENST00000420482 LTN1O94822 1766 aa29.85■■■□□ 2.37
PTPN4-202ENST00000420482 EXOC5O00471 708 aa29.84■■■□□ 2.37
PTPN4-202ENST00000420482 COG3Q96JB2 828 aa29.84■■■□□ 2.37
PTPN4-202ENST00000420482 ERBB3P21860 1342 aa29.83■■■□□ 2.37
PTPN4-202ENST00000420482 ANKRD36BQ8N2N9 1353 aa29.82■■■□□ 2.36
PTPN4-202ENST00000420482 NBPF14Q5TI25 921 aa29.82■■■□□ 2.36
PTPN4-202ENST00000420482 NLRP2Q9NX02 1062 aa29.82■■■□□ 2.36
PTPN4-202ENST00000420482 ANKRD24Q8TF21 1146 aa29.78■■■□□ 2.36
PTPN4-202ENST00000420482 BCL11BQ9C0K0 894 aaPredicted RBP29.78■■■□□ 2.36
PTPN4-202ENST00000420482 BCL9O00512 1426 aa29.78■■■□□ 2.36
PTPN4-202ENST00000420482 MARCH10Q8NA82 808 aaPredicted RBP29.77■■■□□ 2.36
PTPN4-202ENST00000420482 IP6K1Q92551 441 aa29.75■■■□□ 2.35
PTPN4-202ENST00000420482 TNS2Q63HR2 1409 aa29.74■■■□□ 2.35
PTPN4-202ENST00000420482 PLSCR1O15162 318 aa29.74■■■□□ 2.35
PTPN4-202ENST00000420482 IL2RBP14784 551 aa29.74■■■□□ 2.35
PTPN4-202ENST00000420482 AMPHP49418 695 aa29.71■■■□□ 2.35
PTPN4-202ENST00000420482 CASZ1Q86V15 1759 aa29.71■■■□□ 2.35
PTPN4-202ENST00000420482 FAM208AQ9UK61 1670 aaKnown RBP29.7■■■□□ 2.35
PTPN4-202ENST00000420482 MAP3K19Q56UN5 1328 aa29.67■■■□□ 2.34
PTPN4-202ENST00000420482 LTV1Q96GA3 475 aaPredicted RBP29.66■■■□□ 2.34
PTPN4-202ENST00000420482 FYB1O15117 783 aa29.65■■■□□ 2.34
PTPN4-202ENST00000420482 HOXC9P31274 260 aa29.65■■■□□ 2.34
PTPN4-202ENST00000420482 RTL1A6NKG5 1358 aa29.64■■■□□ 2.34
PTPN4-202ENST00000420482 CCER1Q8TC90 406 aaPredicted RBP29.64■■■□□ 2.34
PTPN4-202ENST00000420482 GGNBP2Q9H3C7 697 aa29.64■■■□□ 2.34
PTPN4-202ENST00000420482 NHSQ6T4R5 1651 aa29.63■■■□□ 2.33
PTPN4-202ENST00000420482 PTF1AQ7RTS3 328 aa29.63■■■□□ 2.33
PTPN4-202ENST00000420482 SPON1Q9HCB6 807 aa29.63■■■□□ 2.33
PTPN4-202ENST00000420482 KCNQ2O43526 872 aa29.61■■■□□ 2.33
PTPN4-202ENST00000420482 ANO8Q9HCE9 1232 aaPredicted RBP29.61■■■□□ 2.33
PTPN4-202ENST00000420482 SMG6Q86US8 1419 aaKnown RBP29.6■■■□□ 2.33
PTPN4-202ENST00000420482 KIF20BQ96Q89 1820 aa29.59■■■□□ 2.33
PTPN4-202ENST00000420482 FBLN1P23142 703 aa29.56■■■□□ 2.32
PTPN4-202ENST00000420482 RRS1Q15050 365 aaKnown RBP29.56■■■□□ 2.32
PTPN4-202ENST00000420482 PPP1R1BQ9UD71 204 aaPredicted RBP29.56■■■□□ 2.32
PTPN4-202ENST00000420482 TXNRD1Q16881 649 aa29.55■■■□□ 2.32
PTPN4-202ENST00000420482 PROM2Q8N271 834 aa29.55■■■□□ 2.32
PTPN4-202ENST00000420482 ACSBG1Q96GR2 724 aa29.55■■■□□ 2.32
PTPN4-202ENST00000420482 MYOM1P52179 1685 aa29.55■■■□□ 2.32
PTPN4-202ENST00000420482 KIF24Q5T7B8 1368 aa29.54■■■□□ 2.32
PTPN4-202ENST00000420482 EIF4G2P78344 907 aaKnown RBP eCLIP29.54■■■□□ 2.321e-7■■■■■ 57.2
PTPN4-202ENST00000420482 NSD3Q9BZ95 1437 aa29.54■■■□□ 2.32
PTPN4-202ENST00000420482 DDX54Q8TDD1 881 aaKnown RBP29.53■■■□□ 2.32
PTPN4-202ENST00000420482 BTAF1O14981 1849 aa29.52■■■□□ 2.32
PTPN4-202ENST00000420482 FLT4P35916 1363 aa29.52■■■□□ 2.32
PTPN4-202ENST00000420482 STK32BQ9NY57 414 aa29.51■■■□□ 2.31
PTPN4-202ENST00000420482 CGNL1Q0VF96 1302 aa29.5■■■□□ 2.31
PTPN4-202ENST00000420482 KAT6BQ8WYB5 2073 aa29.5■■■□□ 2.31
PTPN4-202ENST00000420482 POLR3GLQ9BT43 218 aa29.5■■■□□ 2.31
PTPN4-202ENST00000420482 CARD14Q9BXL6 1004 aa29.5■■■□□ 2.31
PTPN4-202ENST00000420482 ZCRB1Q8TBF4 217 aaKnown RBP29.49■■■□□ 2.31
PTPN4-202ENST00000420482 INSRP06213 1382 aa29.49■■■□□ 2.31
PTPN4-202ENST00000420482 PAPPAQ13219 1627 aa29.49■■■□□ 2.31
PTPN4-202ENST00000420482 RAPGEF4Q8WZA2 1011 aa29.48■■■□□ 2.31
PTPN4-202ENST00000420482 NBPF6Q5VWK0 638 aa29.46■■■□□ 2.31
PTPN4-202ENST00000420482 NBPF4Q96M43 638 aa29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms