RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 C8orf37Q96NL8 207 aa19.01■□□□□ 0.63
SHMT1P1-201ENST00000419974 ABCC6O95255 1503 aa19.01■□□□□ 0.63
SHMT1P1-201ENST00000419974 IL13P35225 146 aa19■□□□□ 0.63
SHMT1P1-201ENST00000419974 XPCQ01831 940 aaPredicted RBP19■□□□□ 0.63
SHMT1P1-201ENST00000419974 RRS1Q15050 365 aaKnown RBP19■□□□□ 0.63
SHMT1P1-201ENST00000419974 ARHGEF25Q86VW2 580 aa19■□□□□ 0.63
SHMT1P1-201ENST00000419974 FNBP4Q8N3X1 1017 aaPredicted RBP19■□□□□ 0.63
SHMT1P1-201ENST00000419974 NGLY1Q96IV0 654 aa19■□□□□ 0.63
SHMT1P1-201ENST00000419974 ADAMTS2O95450 1211 aa18.99■□□□□ 0.63
SHMT1P1-201ENST00000419974 FBLN1P23142 703 aa18.99■□□□□ 0.63
SHMT1P1-201ENST00000419974 PNNQ9H307 717 aaKnown RBP18.99■□□□□ 0.63
SHMT1P1-201ENST00000419974 CPDO75976 1380 aa18.98■□□□□ 0.63
SHMT1P1-201ENST00000419974 IP6K1Q92551 441 aa18.98■□□□□ 0.63
SHMT1P1-201ENST00000419974 QTRT2Q9H974 415 aaKnown RBP18.98■□□□□ 0.63
SHMT1P1-201ENST00000419974 ZBED9Q6R2W3 1325 aa18.97■□□□□ 0.63
SHMT1P1-201ENST00000419974 PEAK1Q9H792 1746 aa18.97■□□□□ 0.63
SHMT1P1-201ENST00000419974 FCHSD2O94868 740 aa18.97■□□□□ 0.63
SHMT1P1-201ENST00000419974 CRYBG1Q9Y4K1 1723 aa18.96■□□□□ 0.63
SHMT1P1-201ENST00000419974 HOXC9P31274 260 aa18.96■□□□□ 0.63
SHMT1P1-201ENST00000419974 RBM6P78332 1123 aaKnown RBP18.96■□□□□ 0.63
SHMT1P1-201ENST00000419974 NUTM2GQ5VZR2 741 aa18.96■□□□□ 0.63
SHMT1P1-201ENST00000419974 AMPHP49418 695 aa18.94■□□□□ 0.62
SHMT1P1-201ENST00000419974 HNRNPUQ00839 825 aaKnown RBP eCLIP18.94■□□□□ 0.62
SHMT1P1-201ENST00000419974 HSP90AB2PQ58FF8 381 aa18.94■□□□□ 0.62
SHMT1P1-201ENST00000419974 PPM1GO15355 546 aaPredicted RBP18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 EIF4A2Q14240 407 aaKnown RBP18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 RUNDC1Q96C34 613 aa18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 YTHDC1Q96MU7 727 aaKnown RBP18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 PLEKHF1Q96S99 279 aa18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 USP21Q9UK80 565 aa18.93■□□□□ 0.62
SHMT1P1-201ENST00000419974 CENPBP07199 599 aaPredicted RBP18.92■□□□□ 0.62
SHMT1P1-201ENST00000419974 U2AF1L5P0DN76 240 aaPredicted RBP18.92■□□□□ 0.62
SHMT1P1-201ENST00000419974 U2AF1Q01081 240 aaKnown RBP eCLIP18.92■□□□□ 0.62
SHMT1P1-201ENST00000419974 TRPC5Q9UL62 973 aaPredicted RBP18.92■□□□□ 0.62
SHMT1P1-201ENST00000419974 RGPD1P0DJD0 1748 aa18.91■□□□□ 0.62
SHMT1P1-201ENST00000419974 LMOD2Q6P5Q4 547 aa18.91■□□□□ 0.62
SHMT1P1-201ENST00000419974 KDRP35968 1356 aa18.91■□□□□ 0.62
SHMT1P1-201ENST00000419974 IGSF1Q8N6C5 1336 aa18.9■□□□□ 0.62
SHMT1P1-201ENST00000419974 NCAPD2Q15021 1401 aa18.89■□□□□ 0.61
SHMT1P1-201ENST00000419974 RSPH6AQ9H0K4 717 aa18.89■□□□□ 0.61
SHMT1P1-201ENST00000419974 LTN1O94822 1766 aa18.88■□□□□ 0.61
SHMT1P1-201ENST00000419974 PLEKHG2Q9H7P9 1386 aa18.88■□□□□ 0.61
SHMT1P1-201ENST00000419974 PDE3BQ13370 1112 aa18.88■□□□□ 0.61
SHMT1P1-201ENST00000419974 CCDC27Q2M243 656 aa18.88■□□□□ 0.61
SHMT1P1-201ENST00000419974 BCL9LQ86UU0 1499 aa18.87■□□□□ 0.61
SHMT1P1-201ENST00000419974 ATRNO75882 1429 aa18.87■□□□□ 0.61
SHMT1P1-201ENST00000419974 U2SURPO15042 1029 aaKnown RBP18.87■□□□□ 0.61
SHMT1P1-201ENST00000419974 SOX12O15370 315 aa18.87■□□□□ 0.61
SHMT1P1-201ENST00000419974 ZNF521Q96K83 1311 aa18.86■□□□□ 0.61
SHMT1P1-201ENST00000419974 COL18A1P39060 1754 aa18.86■□□□□ 0.61
SHMT1P1-201ENST00000419974 SLIT2O94813 1529 aa18.84■□□□□ 0.61
SHMT1P1-201ENST00000419974 UPF1Q92900 1129 aaKnown RBP eCLIP18.84■□□□□ 0.61
SHMT1P1-201ENST00000419974 EYA1Q99502 592 aa18.84■□□□□ 0.61
SHMT1P1-201ENST00000419974 ABCA3Q99758 1704 aa18.84■□□□□ 0.61
SHMT1P1-201ENST00000419974 RGS12O14924 1447 aa18.84■□□□□ 0.61
SHMT1P1-201ENST00000419974 APAF1O14727 1248 aa18.83■□□□□ 0.61
SHMT1P1-201ENST00000419974 UNC5CLQ8IV45 518 aa18.83■□□□□ 0.61
SHMT1P1-201ENST00000419974 KIAA0232Q92628 1395 aa18.83■□□□□ 0.6
SHMT1P1-201ENST00000419974 ERBB3P21860 1342 aa18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 HAP1P54257 671 aaPredicted RBP18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 ZC3H6P61129 1189 aaKnown RBP18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 TCP11L2Q8N4U5 519 aa18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 CABLES1Q8TDN4 633 aa18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 AXIN2Q9Y2T1 843 aa18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 CAMTA1Q9Y6Y1 1673 aa18.82■□□□□ 0.6
SHMT1P1-201ENST00000419974 GJD4Q96KN9 370 aaPredicted RBP18.81■□□□□ 0.6
SHMT1P1-201ENST00000419974 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.81■□□□□ 0.6
SHMT1P1-201ENST00000419974 LMO7Q8WWI1 1683 aa18.81■□□□□ 0.6
SHMT1P1-201ENST00000419974 NEFMP07197 916 aa18.8■□□□□ 0.6
SHMT1P1-201ENST00000419974 SULT6B1Q6IMI4 303 aa18.8■□□□□ 0.6
SHMT1P1-201ENST00000419974 CCDC146Q8IYE0 955 aa18.8■□□□□ 0.6
SHMT1P1-201ENST00000419974 MAPK8IP3Q9UPT6 1336 aa18.8■□□□□ 0.6
SHMT1P1-201ENST00000419974 PRKAR2BP31323 418 aa18.79■□□□□ 0.6
SHMT1P1-201ENST00000419974 ANKRD24Q8TF21 1146 aa18.79■□□□□ 0.6
SHMT1P1-201ENST00000419974 TMPOP42166 694 aaKnown RBP18.78■□□□□ 0.6
SHMT1P1-201ENST00000419974 FAM208AQ9UK61 1670 aaKnown RBP18.78■□□□□ 0.6
SHMT1P1-201ENST00000419974 WDR63Q8IWG1 891 aa18.77■□□□□ 0.6
SHMT1P1-201ENST00000419974 FAM83GA6ND36 823 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 HMOX1P09601 288 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 NFE2L2Q16236 605 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 NBPF6Q5VWK0 638 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 WWC1Q8IX03 1113 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 NBPF4Q96M43 638 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 PRDM11Q9NQV5 511 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 NWD2Q9ULI1 1742 aa18.76■□□□□ 0.59
SHMT1P1-201ENST00000419974 VPS72Q15906 364 aa18.75■□□□□ 0.59
SHMT1P1-201ENST00000419974 AEBP1Q8IUX7 1158 aa18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 TRMT2AQ8IZ69 625 aaKnown RBP18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 PHACTR3Q96KR7 559 aa18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 COL5A2P05997 1499 aaPredicted RBP18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 ONECUT3O60422 494 aaPredicted RBP18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 GOLGA2Q08379 1002 aa18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 LMOD3Q0VAK6 560 aa18.74■□□□□ 0.59
SHMT1P1-201ENST00000419974 IL16Q14005 1332 aa18.73■□□□□ 0.59
SHMT1P1-201ENST00000419974 WDR17Q8IZU2 1322 aa18.73■□□□□ 0.59
SHMT1P1-201ENST00000419974 COL14A1Q05707 1796 aaKnown RBP18.73■□□□□ 0.59
SHMT1P1-201ENST00000419974 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
SHMT1P1-201ENST00000419974 TRIM35Q9UPQ4 493 aa18.73■□□□□ 0.59
SHMT1P1-201ENST00000419974 GAS2L2Q8NHY3 880 aa18.72■□□□□ 0.59
SHMT1P1-201ENST00000419974 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms