RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ABCC6O95255 1503 aa17.21■□□□□ 0.35
SKA1-203ENST00000417656 RGPD5Q99666 1765 aa17.21■□□□□ 0.35
SKA1-203ENST00000417656 FYB1O15117 783 aa17.21■□□□□ 0.35
SKA1-203ENST00000417656 COG3Q96JB2 828 aa17.21■□□□□ 0.35
SKA1-203ENST00000417656 QTRT2Q9H974 415 aaKnown RBP17.2■□□□□ 0.34
SKA1-203ENST00000417656 TRPC5Q9UL62 973 aaPredicted RBP17.2■□□□□ 0.34
SKA1-203ENST00000417656 CGNL1Q0VF96 1302 aa17.2■□□□□ 0.34
SKA1-203ENST00000417656 COL5A2P05997 1499 aaPredicted RBP17.19■□□□□ 0.34
SKA1-203ENST00000417656 AATKQ6ZMQ8 1374 aa17.19■□□□□ 0.34
SKA1-203ENST00000417656 ARHGEF25Q86VW2 580 aa17.18■□□□□ 0.34
SKA1-203ENST00000417656 RGS12O14924 1447 aa17.17■□□□□ 0.34
SKA1-203ENST00000417656 RXRBP28702 533 aa17.16■□□□□ 0.34
SKA1-203ENST00000417656 VPS72Q15906 364 aa17.16■□□□□ 0.34
SKA1-203ENST00000417656 STRN4Q9NRL3 753 aa17.16■□□□□ 0.34
SKA1-203ENST00000417656 CDK12Q9NYV4 1490 aaPredicted RBP17.16■□□□□ 0.34
SKA1-203ENST00000417656 PEAK1Q9H792 1746 aa17.16■□□□□ 0.34
SKA1-203ENST00000417656 RBM6P78332 1123 aaKnown RBP17.15■□□□□ 0.34
SKA1-203ENST00000417656 CCDC9Q9Y3X0 531 aaKnown RBP17.15■□□□□ 0.34
SKA1-203ENST00000417656 NSD2O96028 1365 aa17.15■□□□□ 0.34
SKA1-203ENST00000417656 FBLN1P23142 703 aa17.14■□□□□ 0.33
SKA1-203ENST00000417656 GJD4Q96KN9 370 aaPredicted RBP17.14■□□□□ 0.33
SKA1-203ENST00000417656 WNK3Q9BYP7 1800 aa17.13■□□□□ 0.33
SKA1-203ENST00000417656 AXIN2Q9Y2T1 843 aa17.13■□□□□ 0.33
SKA1-203ENST00000417656 KNSTRNQ9Y448 316 aa17.13■□□□□ 0.33
SKA1-203ENST00000417656 MAP3K19Q56UN5 1328 aa17.13■□□□□ 0.33
SKA1-203ENST00000417656 FAM208AQ9UK61 1670 aaKnown RBP17.11■□□□□ 0.33
SKA1-203ENST00000417656 THSD7AQ9UPZ6 1657 aa17.11■□□□□ 0.33
SKA1-203ENST00000417656 EVA1CP58658 441 aa17.11■□□□□ 0.33
SKA1-203ENST00000417656 RRS1Q15050 365 aaKnown RBP17.11■□□□□ 0.33
SKA1-203ENST00000417656 LARP1Q6PKG0 1096 aaKnown RBP17.11■□□□□ 0.33
SKA1-203ENST00000417656 SPATA31A5Q5VU36 1347 aa17.11■□□□□ 0.33
SKA1-203ENST00000417656 SPATA31A7Q8IWB4 1347 aa17.11■□□□□ 0.33
SKA1-203ENST00000417656 RTL1A6NKG5 1358 aa17.11■□□□□ 0.33
SKA1-203ENST00000417656 BLMP54132 1417 aaPredicted RBP17.11■□□□□ 0.33
SKA1-203ENST00000417656 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
SKA1-203ENST00000417656 CRB1P82279 1406 aa17.1■□□□□ 0.33
SKA1-203ENST00000417656 MAP2P11137 1827 aaKnown RBP17.1■□□□□ 0.33
SKA1-203ENST00000417656 BRWD3Q6RI45 1802 aa17.1■□□□□ 0.33
SKA1-203ENST00000417656 SPATA31A1Q5TZJ5 1347 aa17.09■□□□□ 0.33
SKA1-203ENST00000417656 ERBB3P21860 1342 aa17.08■□□□□ 0.32
SKA1-203ENST00000417656 WDR17Q8IZU2 1322 aa17.08■□□□□ 0.32
SKA1-203ENST00000417656 PER1O15534 1290 aaPredicted RBP17.08■□□□□ 0.32
SKA1-203ENST00000417656 CSB-PGBD3P0DP91 1061 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 HOXC9P31274 260 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 TNNT2P45379 298 aaPredicted RBP17.07■□□□□ 0.32
SKA1-203ENST00000417656 AMPHP49418 695 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 IP6K1Q92551 441 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 USP35Q9P2H5 1018 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 EMILIN1Q9Y6C2 1016 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 RGPD2P0DJD1 1756 aa17.07■□□□□ 0.32
SKA1-203ENST00000417656 FLT4P35916 1363 aa17.06■□□□□ 0.32
SKA1-203ENST00000417656 FAM98CQ17RN3 349 aaKnown RBP17.06■□□□□ 0.32
SKA1-203ENST00000417656 SMG6Q86US8 1419 aaKnown RBP17.05■□□□□ 0.32
SKA1-203ENST00000417656 PARP4Q9UKK3 1724 aaKnown RBP17.05■□□□□ 0.32
SKA1-203ENST00000417656 CC2D1BQ5T0F9 858 aaKnown RBP17.05■□□□□ 0.32
SKA1-203ENST00000417656 TOM1L2Q6ZVM7 507 aa17.05■□□□□ 0.32
SKA1-203ENST00000417656 MORC1Q86VD1 984 aa17.05■□□□□ 0.32
SKA1-203ENST00000417656 ANKRD24Q8TF21 1146 aa17.05■□□□□ 0.32
SKA1-203ENST00000417656 LRRC37A3O60309 1634 aa17.05■□□□□ 0.32
SKA1-203ENST00000417656 KIF24Q5T7B8 1368 aa17.04■□□□□ 0.32
SKA1-203ENST00000417656 NPC1L1Q9UHC9 1359 aa17.04■□□□□ 0.32
SKA1-203ENST00000417656 A0A0G2JS52 829 aa17.04■□□□□ 0.32
SKA1-203ENST00000417656 MYT1Q01538 1121 aa17.04■□□□□ 0.32
SKA1-203ENST00000417656 CNGB1Q14028 1251 aaPredicted RBP17.04■□□□□ 0.32
SKA1-203ENST00000417656 LTV1Q96GA3 475 aaPredicted RBP17.04■□□□□ 0.32
SKA1-203ENST00000417656 TCP11L2Q8N4U5 519 aa17.03■□□□□ 0.32
SKA1-203ENST00000417656 INSRP06213 1382 aa17.02■□□□□ 0.32
SKA1-203ENST00000417656 PPM1GO15355 546 aaPredicted RBP17.02■□□□□ 0.32
SKA1-203ENST00000417656 SEPT12Q8IYM1 358 aa17.02■□□□□ 0.32
SKA1-203ENST00000417656 POLKQ9UBT6 870 aa17.02■□□□□ 0.32
SKA1-203ENST00000417656 HSP90AB2PQ58FF8 381 aa17.01■□□□□ 0.31
SKA1-203ENST00000417656 NLRP2Q9NX02 1062 aa17.01■□□□□ 0.31
SKA1-203ENST00000417656 DISP2A7MBM2 1401 aa17■□□□□ 0.31
SKA1-203ENST00000417656 ONECUT3O60422 494 aaPredicted RBP17■□□□□ 0.31
SKA1-203ENST00000417656 BARGINQ6ZT62 677 aa17■□□□□ 0.31
SKA1-203ENST00000417656 CARD10Q9BWT7 1032 aa17■□□□□ 0.31
SKA1-203ENST00000417656 THRAP3Q9Y2W1 955 aaKnown RBP17■□□□□ 0.31
SKA1-203ENST00000417656 DDX10Q13206 875 aaKnown RBP16.98■□□□□ 0.31
SKA1-203ENST00000417656 NPM3O75607 178 aaKnown RBP16.97■□□□□ 0.31
SKA1-203ENST00000417656 SOCS7O14512 581 aa16.95■□□□□ 0.3
SKA1-203ENST00000417656 KRT27Q7Z3Y8 459 aa16.95■□□□□ 0.3
SKA1-203ENST00000417656 MEGF6O75095 1541 aa16.95■□□□□ 0.3
SKA1-203ENST00000417656 TNS2Q63HR2 1409 aa16.95■□□□□ 0.3
SKA1-203ENST00000417656 ZNF316A6NFI3 1004 aaPredicted RBP16.94■□□□□ 0.3
SKA1-203ENST00000417656 USHBP1Q8N6Y0 703 aa16.94■□□□□ 0.3
SKA1-203ENST00000417656 NCAPD2Q15021 1401 aa16.94■□□□□ 0.3
SKA1-203ENST00000417656 RGPD1P0DJD0 1748 aa16.93■□□□□ 0.3
SKA1-203ENST00000417656 SHANK3Q9BYB0 1731 aa16.93■□□□□ 0.3
SKA1-203ENST00000417656 NBPF6Q5VWK0 638 aa16.93■□□□□ 0.3
SKA1-203ENST00000417656 NBPF4Q96M43 638 aa16.93■□□□□ 0.3
SKA1-203ENST00000417656 COL3A1P02461 1466 aaPredicted RBP16.93■□□□□ 0.3
SKA1-203ENST00000417656 PARD3Q8TEW0 1356 aa16.92■□□□□ 0.3
SKA1-203ENST00000417656 MTHFSP49914 203 aa16.92■□□□□ 0.3
SKA1-203ENST00000417656 EIF4A2Q14240 407 aaKnown RBP16.92■□□□□ 0.3
SKA1-203ENST00000417656 CDCA7Q9BWT1 371 aaPredicted RBP16.92■□□□□ 0.3
SKA1-203ENST00000417656 IL2RBP14784 551 aa16.91■□□□□ 0.3
SKA1-203ENST00000417656 FAM182BQ5T319 152 aa16.91■□□□□ 0.3
SKA1-203ENST00000417656 EP400Q96L91 3159 aa16.9■□□□□ 0.3
SKA1-203ENST00000417656 OVOS2A0A0G2JMS6 1433 aa16.9■□□□□ 0.3
SKA1-203ENST00000417656 DDB1Q16531 1140 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms