RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 NLRP13Q86W25 1043 aa26.06■■□□□ 1.76
VCP-202ENST00000417448 SYT17Q9BSW7 474 aa26.05■■□□□ 1.76
VCP-202ENST00000417448 FHDC1Q9C0D6 1143 aaPredicted RBP26.05■■□□□ 1.76
VCP-202ENST00000417448 SLIT3O75094 1523 aa26.04■■□□□ 1.76
VCP-202ENST00000417448 MARCH10Q8NA82 808 aaPredicted RBP26.04■■□□□ 1.76
VCP-202ENST00000417448 ZBTB7CA1YPR0 619 aa26.03■■□□□ 1.76
VCP-202ENST00000417448 BCL9O00512 1426 aa26.03■■□□□ 1.76
VCP-202ENST00000417448 AATKQ6ZMQ8 1374 aa26.02■■□□□ 1.76
VCP-202ENST00000417448 PPIP5K1Q6PFW1 1433 aa26.02■■□□□ 1.76
VCP-202ENST00000417448 RGPD5Q99666 1765 aa26.02■■□□□ 1.76
VCP-202ENST00000417448 C1QTNF8P60827 252 aa26.01■■□□□ 1.75
VCP-202ENST00000417448 SGIP1Q9BQI5 828 aa26.01■■□□□ 1.75
VCP-202ENST00000417448 TOM1L2Q6ZVM7 507 aa26■■□□□ 1.75
VCP-202ENST00000417448 PIK3C2AO00443 1686 aa25.99■■□□□ 1.75
VCP-202ENST00000417448 SLC15A2Q16348 729 aa25.99■■□□□ 1.75
VCP-202ENST00000417448 TXNRD1Q16881 649 aa25.99■■□□□ 1.75
VCP-202ENST00000417448 STAC3Q96MF2 364 aa25.99■■□□□ 1.75
VCP-202ENST00000417448 STK32BQ9NY57 414 aa25.98■■□□□ 1.75
VCP-202ENST00000417448 KIAA1210Q9ULL0 1709 aa25.97■■□□□ 1.75
VCP-202ENST00000417448 AXIN2Q9Y2T1 843 aa25.97■■□□□ 1.75
VCP-202ENST00000417448 GOLGB1Q14789 3259 aaKnown RBP25.97■■□□□ 1.75
VCP-202ENST00000417448 MTFR1LQ9H019 292 aa25.96■■□□□ 1.75
VCP-202ENST00000417448 WDR17Q8IZU2 1322 aa25.95■■□□□ 1.75
VCP-202ENST00000417448 USP6P35125 1406 aa25.95■■□□□ 1.74
VCP-202ENST00000417448 PAPPAQ13219 1627 aa25.95■■□□□ 1.74
VCP-202ENST00000417448 CEP350Q5VT06 3117 aa25.94■■□□□ 1.74
VCP-202ENST00000417448 BRD4O60885 1362 aaPredicted RBP25.94■■□□□ 1.74
VCP-202ENST00000417448 NHSQ6T4R5 1651 aa25.93■■□□□ 1.74
VCP-202ENST00000417448 NLRP6P59044 892 aa25.93■■□□□ 1.74
VCP-202ENST00000417448 CABP2Q9NPB3 220 aa25.93■■□□□ 1.74
VCP-202ENST00000417448 SRPK2P78362 688 aaKnown RBP25.92■■□□□ 1.74
VCP-202ENST00000417448 CPSF1Q10570 1443 aaKnown RBP25.91■■□□□ 1.74
VCP-202ENST00000417448 QRICH2Q9H0J4 1663 aa25.9■■□□□ 1.74
VCP-202ENST00000417448 SIN3AQ96ST3 1273 aa25.9■■□□□ 1.74
VCP-202ENST00000417448 CDCA7Q9BWT1 371 aaPredicted RBP25.9■■□□□ 1.74
VCP-202ENST00000417448 IFFO2Q5TF58 517 aa25.89■■□□□ 1.74
VCP-202ENST00000417448 MAP3K5Q99683 1374 aa25.89■■□□□ 1.74
VCP-202ENST00000417448 TRPM1Q7Z4N2 1603 aa25.88■■□□□ 1.73
VCP-202ENST00000417448 NBPF1Q3BBV0 1214 aa25.87■■□□□ 1.73
VCP-202ENST00000417448 ARXQ96QS3 562 aa25.87■■□□□ 1.73
VCP-202ENST00000417448 CABP1Q9NZU7 370 aa25.86■■□□□ 1.73
VCP-202ENST00000417448 TNS2Q63HR2 1409 aa25.86■■□□□ 1.73
VCP-202ENST00000417448 NEUROD1Q13562 356 aa25.85■■□□□ 1.73
VCP-202ENST00000417448 ARHGEF25Q86VW2 580 aa25.85■■□□□ 1.73
VCP-202ENST00000417448 CARD10Q9BWT7 1032 aa25.85■■□□□ 1.73
VCP-202ENST00000417448 BTAF1O14981 1849 aa25.85■■□□□ 1.73
VCP-202ENST00000417448 CENPJQ9HC77 1338 aaPredicted RBP25.83■■□□□ 1.73
VCP-202ENST00000417448 SHANK3Q9BYB0 1731 aa25.83■■□□□ 1.72
VCP-202ENST00000417448 EXOC5O00471 708 aa25.82■■□□□ 1.72
VCP-202ENST00000417448 COL24A1Q17RW2 1714 aa25.81■■□□□ 1.72
VCP-202ENST00000417448 ZNF827Q17R98 1081 aa25.81■■□□□ 1.72
VCP-202ENST00000417448 NFAT5O94916 1531 aa25.81■■□□□ 1.72
VCP-202ENST00000417448 ABCC6O95255 1503 aa25.81■■□□□ 1.72
VCP-202ENST00000417448 CSB-PGBD3P0DP91 1061 aa25.8■■□□□ 1.72
VCP-202ENST00000417448 ACSBG1Q96GR2 724 aa25.8■■□□□ 1.72
VCP-202ENST00000417448 QSER1Q2KHR3 1735 aa25.79■■□□□ 1.72
VCP-202ENST00000417448 SOX12O15370 315 aa25.78■■□□□ 1.72
VCP-202ENST00000417448 GIGYF1O75420 1035 aaPredicted RBP25.78■■□□□ 1.72
VCP-202ENST00000417448 GPR162Q16538 588 aa25.78■■□□□ 1.72
VCP-202ENST00000417448 CCDC7Q96M83 1385 aa25.78■■□□□ 1.72
VCP-202ENST00000417448 TUBGCP6Q96RT7 1819 aa25.77■■□□□ 1.72
VCP-202ENST00000417448 KAT6BQ8WYB5 2073 aa25.76■■□□□ 1.71
VCP-202ENST00000417448 LRRC4BQ9NT99 713 aa25.75■■□□□ 1.71
VCP-202ENST00000417448 TTC21BQ7Z4L5 1316 aa25.74■■□□□ 1.71
VCP-202ENST00000417448 KCNH5Q8NCM2 988 aa25.74■■□□□ 1.71
VCP-202ENST00000417448 KLHL34Q8N239 644 aa25.7■■□□□ 1.7
VCP-202ENST00000417448 LTN1O94822 1766 aa25.69■■□□□ 1.7
VCP-202ENST00000417448 AKT1S1Q96B36 256 aa25.69■■□□□ 1.7
VCP-202ENST00000417448 PELP1Q8IZL8 1130 aaKnown RBP25.68■■□□□ 1.7
VCP-202ENST00000417448 NLGN2Q8NFZ4 835 aa25.68■■□□□ 1.7
VCP-202ENST00000417448 L3MBTL2Q969R5 705 aa25.68■■□□□ 1.7
VCP-202ENST00000417448 PNPLA7Q6ZV29 1317 aa25.66■■□□□ 1.7
VCP-202ENST00000417448 MON2Q7Z3U7 1717 aa25.66■■□□□ 1.7
VCP-202ENST00000417448 USP54Q70EL1 1684 aa25.66■■□□□ 1.7
VCP-202ENST00000417448 ERBB3P21860 1342 aa25.65■■□□□ 1.7
VCP-202ENST00000417448 TTC21AQ8NDW8 1320 aa25.65■■□□□ 1.7
VCP-202ENST00000417448 SLC16A10Q8TF71 515 aa25.64■■□□□ 1.7
VCP-202ENST00000417448 EVC2Q86UK5 1308 aa25.63■■□□□ 1.69
VCP-202ENST00000417448 IL2RBP14784 551 aa25.63■■□□□ 1.69
VCP-202ENST00000417448 POLD1P28340 1107 aa25.63■■□□□ 1.69
VCP-202ENST00000417448 ZNF692Q9BU19 519 aaPredicted RBP25.63■■□□□ 1.69
VCP-202ENST00000417448 YBX3P16989 372 aaKnown RBP eCLIP25.62■■□□□ 1.69
VCP-202ENST00000417448 NLRP2Q9NX02 1062 aa25.62■■□□□ 1.69
VCP-202ENST00000417448 LY75O60449 1722 aa25.6■■□□□ 1.69
VCP-202ENST00000417448 KCNQ4P56696 695 aa25.59■■□□□ 1.69
VCP-202ENST00000417448 KTN1Q86UP2 1357 aaKnown RBP25.58■■□□□ 1.69
VCP-202ENST00000417448 DOT1LQ8TEK3 1739 aa25.57■■□□□ 1.68
VCP-202ENST00000417448 SLC27A3Q5K4L6 730 aa25.57■■□□□ 1.68
VCP-202ENST00000417448 CCER1Q8TC90 406 aaPredicted RBP25.57■■□□□ 1.68
VCP-202ENST00000417448 USP31Q70CQ4 1352 aa25.56■■□□□ 1.68
VCP-202ENST00000417448 ATP10DQ9P241 1426 aa25.55■■□□□ 1.68
VCP-202ENST00000417448 TFCP2L1Q9NZI6 479 aa25.55■■□□□ 1.68
VCP-202ENST00000417448 ANKRD24Q8TF21 1146 aa25.54■■□□□ 1.68
VCP-202ENST00000417448 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.52■■□□□ 1.68
VCP-202ENST00000417448 NSD2O96028 1365 aa25.52■■□□□ 1.68
VCP-202ENST00000417448 TONSLQ96HA7 1378 aa25.52■■□□□ 1.68
VCP-202ENST00000417448 CD163L1Q9NR16 1453 aa25.52■■□□□ 1.68
VCP-202ENST00000417448 GRIN3BO60391 1043 aa25.51■■□□□ 1.67
VCP-202ENST00000417448 NME9Q86XW9 330 aa25.51■■□□□ 1.67
VCP-202ENST00000417448 FAM208AQ9UK61 1670 aaKnown RBP25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms