RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 ARHGEF25Q86VW2 580 aa20.68■□□□□ 0.9
SHMT2-202ENST00000414700 ABCA3Q99758 1704 aa20.68■□□□□ 0.9
SHMT2-202ENST00000414700 HOXC9P31274 260 aa20.67■□□□□ 0.9
SHMT2-202ENST00000414700 HNRNPUQ00839 825 aaKnown RBP eCLIP20.67■□□□□ 0.9
SHMT2-202ENST00000414700 LRRC59Q96AG4 307 aaKnown RBP20.67■□□□□ 0.9
SHMT2-202ENST00000414700 U2SURPO15042 1029 aaKnown RBP20.66■□□□□ 0.9
SHMT2-202ENST00000414700 IL13P35225 146 aa20.66■□□□□ 0.9
SHMT2-202ENST00000414700 U2AF1L5P0DN76 240 aaPredicted RBP20.65■□□□□ 0.9
SHMT2-202ENST00000414700 U2AF1Q01081 240 aaKnown RBP eCLIP20.65■□□□□ 0.9
SHMT2-202ENST00000414700 EIF4A2Q14240 407 aaKnown RBP20.65■□□□□ 0.9
SHMT2-202ENST00000414700 CCDC146Q8IYE0 955 aa20.65■□□□□ 0.9
SHMT2-202ENST00000414700 RGPD5Q99666 1765 aa20.65■□□□□ 0.9
SHMT2-202ENST00000414700 BLMP54132 1417 aaPredicted RBP20.64■□□□□ 0.89
SHMT2-202ENST00000414700 KIF24Q5T7B8 1368 aa20.63■□□□□ 0.89
SHMT2-202ENST00000414700 IP6K1Q92551 441 aa20.63■□□□□ 0.89
SHMT2-202ENST00000414700 NUDCQ9Y266 331 aa20.63■□□□□ 0.89
SHMT2-202ENST00000414700 AXIN2Q9Y2T1 843 aa20.63■□□□□ 0.89
SHMT2-202ENST00000414700 RTL1A6NKG5 1358 aa20.62■□□□□ 0.89
SHMT2-202ENST00000414700 KIAA0232Q92628 1395 aa20.62■□□□□ 0.89
SHMT2-202ENST00000414700 CHRNA2Q15822 529 aa20.61■□□□□ 0.89
SHMT2-202ENST00000414700 LTV1Q96GA3 475 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-202ENST00000414700 RGPD1P0DJD0 1748 aa20.6■□□□□ 0.89
SHMT2-202ENST00000414700 HMOX1P09601 288 aa20.6■□□□□ 0.89
SHMT2-202ENST00000414700 COL18A1P39060 1754 aa20.6■□□□□ 0.89
SHMT2-202ENST00000414700 COL22A1Q8NFW1 1626 aaPredicted RBP20.6■□□□□ 0.89
SHMT2-202ENST00000414700 HAP1P54257 671 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-202ENST00000414700 RGPD2P0DJD1 1756 aa20.58■□□□□ 0.89
SHMT2-202ENST00000414700 SALL2Q9Y467 1007 aaPredicted RBP20.58■□□□□ 0.89
SHMT2-202ENST00000414700 CPDO75976 1380 aa20.57■□□□□ 0.88
SHMT2-202ENST00000414700 AEBP1Q8IUX7 1158 aa20.57■□□□□ 0.88
SHMT2-202ENST00000414700 EYA1Q99502 592 aa20.56■□□□□ 0.88
SHMT2-202ENST00000414700 APAF1O14727 1248 aa20.55■□□□□ 0.88
SHMT2-202ENST00000414700 PLEKHF1Q96S99 279 aa20.55■□□□□ 0.88
SHMT2-202ENST00000414700 RSPH6AQ9H0K4 717 aa20.55■□□□□ 0.88
SHMT2-202ENST00000414700 PRDM11Q9NQV5 511 aa20.55■□□□□ 0.88
SHMT2-202ENST00000414700 SULT6B1Q6IMI4 303 aa20.54■□□□□ 0.88
SHMT2-202ENST00000414700 ANKRD24Q8TF21 1146 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 RUNDC1Q96C34 613 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 IGSF1Q8N6C5 1336 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 FCHSD2O94868 740 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 PRKAR2BP31323 418 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 HSPA1LP34931 641 aa20.53■□□□□ 0.88
SHMT2-202ENST00000414700 LMO7Q8WWI1 1683 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 ERBB3P21860 1342 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 FAM83GA6ND36 823 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 NBPF6Q5VWK0 638 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 USHBP1Q8N6Y0 703 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 NBPF4Q96M43 638 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 CAMTA1Q9Y6Y1 1673 aa20.52■□□□□ 0.88
SHMT2-202ENST00000414700 ZBED9Q6R2W3 1325 aa20.51■□□□□ 0.87
SHMT2-202ENST00000414700 TCP11L2Q8N4U5 519 aa20.51■□□□□ 0.87
SHMT2-202ENST00000414700 PHACTR3Q96KR7 559 aa20.51■□□□□ 0.87
SHMT2-202ENST00000414700 RRP7AQ9Y3A4 280 aaKnown RBP20.51■□□□□ 0.87
SHMT2-202ENST00000414700 NUTM2BA6NNL0 878 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-202ENST00000414700 NUTM2EB1AL46 878 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-202ENST00000414700 NUTM2AQ8IVF1 878 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-202ENST00000414700 NEUROD2Q15784 382 aa20.49■□□□□ 0.87
SHMT2-202ENST00000414700 ABCC6O95255 1503 aa20.49■□□□□ 0.87
SHMT2-202ENST00000414700 KDRP35968 1356 aa20.49■□□□□ 0.87
SHMT2-202ENST00000414700 ADAMTS2O95450 1211 aa20.48■□□□□ 0.87
SHMT2-202ENST00000414700 JCADQ9P266 1359 aa20.48■□□□□ 0.87
SHMT2-202ENST00000414700 MAPK8IP3Q9UPT6 1336 aa20.47■□□□□ 0.87
SHMT2-202ENST00000414700 COL5A2P05997 1499 aaPredicted RBP20.46■□□□□ 0.87
SHMT2-202ENST00000414700 COL14A1Q05707 1796 aaKnown RBP20.44■□□□□ 0.86
SHMT2-202ENST00000414700 TMPOP42166 694 aaKnown RBP20.44■□□□□ 0.86
SHMT2-202ENST00000414700 PNNQ9H307 717 aaKnown RBP20.44■□□□□ 0.86
SHMT2-202ENST00000414700 BTG4Q9NY30 223 aa20.44■□□□□ 0.86
SHMT2-202ENST00000414700 DLG5Q8TDM6 1919 aa20.43■□□□□ 0.86
SHMT2-202ENST00000414700 CSB-PGBD3P0DP91 1061 aa20.43■□□□□ 0.86
SHMT2-202ENST00000414700 NLRP2Q9NX02 1062 aa20.43■□□□□ 0.86
SHMT2-202ENST00000414700 STRN4Q9NRL3 753 aa20.43■□□□□ 0.86
SHMT2-202ENST00000414700 NCAPD2Q15021 1401 aa20.42■□□□□ 0.86
SHMT2-202ENST00000414700 PLCH1Q4KWH8 1693 aa20.42■□□□□ 0.86
SHMT2-202ENST00000414700 FAM208AQ9UK61 1670 aaKnown RBP20.42■□□□□ 0.86
SHMT2-202ENST00000414700 ZNF521Q96K83 1311 aa20.41■□□□□ 0.86
SHMT2-202ENST00000414700 WDR17Q8IZU2 1322 aa20.41■□□□□ 0.86
SHMT2-202ENST00000414700 LRP6O75581 1613 aa20.4■□□□□ 0.86
SHMT2-202ENST00000414700 LARP1Q6PKG0 1096 aaKnown RBP20.4■□□□□ 0.86
SHMT2-202ENST00000414700 CDCA7LQ96GN5 454 aa20.4■□□□□ 0.86
SHMT2-202ENST00000414700 RBM19Q9Y4C8 960 aaKnown RBP20.4■□□□□ 0.86
SHMT2-202ENST00000414700 NEFMP07197 916 aa20.39■□□□□ 0.86
SHMT2-202ENST00000414700 RIPK4P57078 832 aa20.39■□□□□ 0.86
SHMT2-202ENST00000414700 FKBP8Q14318 412 aa20.39■□□□□ 0.86
SHMT2-202ENST00000414700 WWC1Q8IX03 1113 aa20.39■□□□□ 0.86
SHMT2-202ENST00000414700 NFE2L2Q16236 605 aa20.38■□□□□ 0.85
SHMT2-202ENST00000414700 TOM1L2Q6ZVM7 507 aa20.38■□□□□ 0.85
SHMT2-202ENST00000414700 PHF23Q9BUL5 403 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-202ENST00000414700 TRIM35Q9UPQ4 493 aa20.38■□□□□ 0.85
SHMT2-202ENST00000414700 EVA1CP58658 441 aa20.37■□□□□ 0.85
SHMT2-202ENST00000414700 MTHFSDQ2M296 383 aaKnown RBP20.37■□□□□ 0.85
SHMT2-202ENST00000414700 SPATA31A6Q5VVP1 1343 aa20.36■□□□□ 0.85
SHMT2-202ENST00000414700 SPINK5Q9NQ38 1064 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-202ENST00000414700 NRAPQ86VF7 1730 aa20.35■□□□□ 0.85
SHMT2-202ENST00000414700 USP35Q9P2H5 1018 aa20.35■□□□□ 0.85
SHMT2-202ENST00000414700 MEGF6O75095 1541 aa20.35■□□□□ 0.85
SHMT2-202ENST00000414700 CCDC27Q2M243 656 aa20.34■□□□□ 0.85
SHMT2-202ENST00000414700 C8orf37Q96NL8 207 aa20.34■□□□□ 0.85
SHMT2-202ENST00000414700 NGEFQ8N5V2 710 aa20.34■□□□□ 0.85
SHMT2-202ENST00000414700 THUMPD2Q9BTF0 503 aaKnown RBP20.33■□□□□ 0.85
SHMT2-202ENST00000414700 SLIT2O94813 1529 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms