RNA–Protein interactions for RNA: ENST00000413806.7

SMARCA4-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 5 BASIC

Gene SMARCA4, Length 5,512 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-202ENST00000413806 MAGI1Q96QZ7 1491 aaPredicted RBP16.38■□□□□ 0.21
SMARCA4-202ENST00000413806 ANKRD1Q15327 319 aa16.38■□□□□ 0.21
SMARCA4-202ENST00000413806 SART3Q15020 963 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-202ENST00000413806 HDGFL1Q5TGJ6 251 aa16.38■□□□□ 0.21
SMARCA4-202ENST00000413806 SDF4Q9BRK5 362 aa16.38■□□□□ 0.21
SMARCA4-202ENST00000413806 RNF214Q8ND24 703 aa16.37■□□□□ 0.21
SMARCA4-202ENST00000413806 ERCC4Q92889 916 aaPredicted RBP16.37■□□□□ 0.21
SMARCA4-202ENST00000413806 TCEAL9Q9UHQ7 104 aa16.37■□□□□ 0.21
SMARCA4-202ENST00000413806 KIF14Q15058 1648 aa16.36■□□□□ 0.21
SMARCA4-202ENST00000413806 ABCC5O15440 1437 aa16.36■□□□□ 0.21
SMARCA4-202ENST00000413806 KINO60870 393 aaKnown RBP16.36■□□□□ 0.21
SMARCA4-202ENST00000413806 WDR33Q9C0J8 1336 aaKnown RBP16.36■□□□□ 0.21
SMARCA4-202ENST00000413806 CYP46A1Q9Y6A2 500 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 CCDC27Q2M243 656 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 FBXW7Q969H0 707 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 DNAJC2Q99543 621 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 DCTN1Q14203 1278 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 DHX8Q14562 1220 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 CCP110O43303 1012 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 KIF6Q6ZMV9 814 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 RPAP2Q8IXW5 612 aaPredicted RBP16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 ZMYND15Q9H091 742 aa16.35■□□□□ 0.21
SMARCA4-202ENST00000413806 RBM33Q96EV2 1170 aaKnown RBP16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 NFE2L2Q16236 605 aa16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 CTDP1Q9Y5B0 961 aaPredicted RBP16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 TATP17735 454 aaPredicted RBP16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 ESCO1Q5FWF5 840 aa16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 TRIM5Q9C035 493 aa16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 ABCC11Q96J66 1382 aa16.34■□□□□ 0.21
SMARCA4-202ENST00000413806 GRPEL1Q9HAV7 217 aa16.33■□□□□ 0.21
SMARCA4-202ENST00000413806 LAMC3Q9Y6N6 1575 aa16.33■□□□□ 0.2
SMARCA4-202ENST00000413806 ARHGEF11O15085 1522 aa16.33■□□□□ 0.2
SMARCA4-202ENST00000413806 RAD21O60216 631 aa16.33■□□□□ 0.2
SMARCA4-202ENST00000413806 PRDM10Q9NQV6 1147 aa16.33■□□□□ 0.2
SMARCA4-202ENST00000413806 THEMISQ8N1K5 641 aaPredicted RBP16.33■□□□□ 0.2
SMARCA4-202ENST00000413806 ESPNB1AK53 854 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 PLCD4Q9BRC7 762 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 NCOA1Q15788 1441 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 TSPYL1Q9H0U9 437 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 DEF6Q9H4E7 631 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 TMPOP42166 694 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 CCDC158Q5M9N0 1113 aa16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 NKTRP30414 1462 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-202ENST00000413806 PDIA4P13667 645 aaKnown RBP16.31■□□□□ 0.2
SMARCA4-202ENST00000413806 ERICH4A6NGS2 130 aa16.31■□□□□ 0.2
SMARCA4-202ENST00000413806 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.31■□□□□ 0.27e-8■■□□□ 12
SMARCA4-202ENST00000413806 FIBPO43427 364 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 ZSCAN31Q96LW9 406 aaPredicted RBP16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 TTC39AQ5SRH9 613 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 MSH5O43196 834 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 CCDC192P0DO97 292 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 ALDH1L2Q3SY69 923 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 JMYQ8N9B5 988 aa16.3■□□□□ 0.2
SMARCA4-202ENST00000413806 SLC3A2P08195 630 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 USP8P40818 1118 aa16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 ZNF530Q6P9A1 599 aaPredicted RBP16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 PRM3Q9NNZ6 103 aa16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 FAM135AQ9P2D6 1515 aa16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 STK38Q15208 465 aa16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 RPRD2Q5VT52 1461 aaKnown RBP16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 SPG7Q9UQ90 795 aa16.29■□□□□ 0.2
SMARCA4-202ENST00000413806 PIP4K2AP48426 406 aaPredicted RBP16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 PDILTQ8N807 584 aa16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 MCM4P33991 863 aa16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 KRT85P78386 507 aa16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 TMEM57Q8N5G2 664 aa16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 PDCL3Q9H2J4 239 aa16.28■□□□□ 0.2
SMARCA4-202ENST00000413806 SMC2O95347 1197 aa16.27■□□□□ 0.2
SMARCA4-202ENST00000413806 FILIP1LQ4L180 1135 aa16.27■□□□□ 0.2
SMARCA4-202ENST00000413806 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.19
SMARCA4-202ENST00000413806 CCDC43Q96MW1 224 aaKnown RBP16.27■□□□□ 0.19
SMARCA4-202ENST00000413806 FYB1O15117 783 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 SMARCE1Q969G3 411 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 CCDC112Q8NEF3 446 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 PROSER2Q86WR7 435 aaPredicted RBP16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 KIAA0754O94854 1291 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 ZSCAN25Q6NSZ9 544 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 TXLNAP40222 546 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 PDCL2Q8N4E4 241 aa16.26■□□□□ 0.19
SMARCA4-202ENST00000413806 RARSP54136 660 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 GNL3LQ9NVN8 582 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 NAP1L1P55209 391 aaKnown RBP16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 CABP4P57796 275 aa16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 KRT32Q14532 448 aa16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 TNMDQ9H2S6 317 aa16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 AXDND1Q5T1B0 1012 aaPredicted RBP16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 PDRG1Q9NUG6 133 aa16.25■□□□□ 0.19
SMARCA4-202ENST00000413806 C11orf95C9JLR9 678 aaPredicted RBP16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 CAGE1Q8TC20 777 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 CNNM1Q9NRU3 951 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 SRGAP3O43295 1099 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 NSD2O96028 1365 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 CBX1P83916 185 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 DACH1Q9UI36 760 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 SKIDA1Q1XH10 827 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 SCAF11Q99590 1463 aaKnown RBP16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 RRS1Q15050 365 aaKnown RBP16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 BLOC1S2Q6QNY1 142 aa16.24■□□□□ 0.19
SMARCA4-202ENST00000413806 AACSQ86V21 672 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms