RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 SOX12O15370 315 aa27.53■■■□□ 2
TSPAN4-209ENST00000409543 TMF1P82094 1093 aa27.53■■■□□ 2
TSPAN4-209ENST00000409543 AXIN2Q9Y2T1 843 aa27.53■■■□□ 2
TSPAN4-209ENST00000409543 FAM182BQ5T319 152 aa27.51■■□□□ 1.99
TSPAN4-209ENST00000409543 DEFB132Q7Z7B7 95 aa27.5■■□□□ 1.99
TSPAN4-209ENST00000409543 CCER1Q8TC90 406 aaPredicted RBP27.5■■□□□ 1.99
TSPAN4-209ENST00000409543 WDR17Q8IZU2 1322 aa27.48■■□□□ 1.99
TSPAN4-209ENST00000409543 PDE3BQ13370 1112 aa27.47■■□□□ 1.99
TSPAN4-209ENST00000409543 TOM1L2Q6ZVM7 507 aa27.47■■□□□ 1.99
TSPAN4-209ENST00000409543 ABCC6O95255 1503 aa27.46■■□□□ 1.99
TSPAN4-209ENST00000409543 CDCA8Q53HL2 280 aa27.46■■□□□ 1.99
TSPAN4-209ENST00000409543 FAM196AQ6ZSG2 479 aa27.46■■□□□ 1.99
TSPAN4-209ENST00000409543 RGPD5Q99666 1765 aa27.45■■□□□ 1.98
TSPAN4-209ENST00000409543 ANKRD36BQ8N2N9 1353 aa27.44■■□□□ 1.98
TSPAN4-209ENST00000409543 RGPD1P0DJD0 1748 aa27.44■■□□□ 1.98
TSPAN4-209ENST00000409543 OVOS2A0A0J9YW53 1432 aa27.43■■□□□ 1.98
TSPAN4-209ENST00000409543 OVOS2Q6IE36 1432 aa27.43■■□□□ 1.98
TSPAN4-209ENST00000409543 BAG6P46379 1132 aa27.43■■□□□ 1.98
TSPAN4-209ENST00000409543 PARP4Q9UKK3 1724 aaKnown RBP27.43■■□□□ 1.98
TSPAN4-209ENST00000409543 CSB-PGBD3P0DP91 1061 aa27.41■■□□□ 1.98
TSPAN4-209ENST00000409543 CARD10Q9BWT7 1032 aa27.41■■□□□ 1.98
TSPAN4-209ENST00000409543 CDCA7Q9BWT1 371 aaPredicted RBP27.38■■□□□ 1.97
TSPAN4-209ENST00000409543 LTN1O94822 1766 aa27.37■■□□□ 1.97
TSPAN4-209ENST00000409543 TRIM37O94972 964 aa27.37■■□□□ 1.97
TSPAN4-209ENST00000409543 COG3Q96JB2 828 aa27.37■■□□□ 1.97
TSPAN4-209ENST00000409543 DISP2A7MBM2 1401 aa27.36■■□□□ 1.97
TSPAN4-209ENST00000409543 C11orf95C9JLR9 678 aaPredicted RBP27.36■■□□□ 1.97
TSPAN4-209ENST00000409543 TNS1Q9HBL0 1735 aaKnown RBP27.36■■□□□ 1.97
TSPAN4-209ENST00000409543 DDB1Q16531 1140 aa27.35■■□□□ 1.97
TSPAN4-209ENST00000409543 CCDC7Q96M83 1385 aa27.35■■□□□ 1.97
TSPAN4-209ENST00000409543 EN1Q05925 392 aaPredicted RBP27.34■■□□□ 1.97
TSPAN4-209ENST00000409543 ERBB3P21860 1342 aa27.34■■□□□ 1.97
TSPAN4-209ENST00000409543 WNK3Q9BYP7 1800 aa27.34■■□□□ 1.97
TSPAN4-209ENST00000409543 LRRC37A3O60309 1634 aa27.34■■□□□ 1.97
TSPAN4-209ENST00000409543 FYB1O15117 783 aa27.31■■□□□ 1.96
TSPAN4-209ENST00000409543 ANKRD24Q8TF21 1146 aa27.3■■□□□ 1.96
TSPAN4-209ENST00000409543 IP6K1Q92551 441 aa27.3■■□□□ 1.96
TSPAN4-209ENST00000409543 OVOS2A0A0G2JMS6 1433 aa27.3■■□□□ 1.96
TSPAN4-209ENST00000409543 APBA3O96018 575 aa27.29■■□□□ 1.96
TSPAN4-209ENST00000409543 NLRP2Q9NX02 1062 aa27.29■■□□□ 1.96
TSPAN4-209ENST00000409543 PEAK1Q9H792 1746 aa27.28■■□□□ 1.96
TSPAN4-209ENST00000409543 EIF4G2P78344 907 aaKnown RBP eCLIP27.28■■□□□ 1.96
TSPAN4-209ENST00000409543 MYOM1P52179 1685 aa27.27■■□□□ 1.96
TSPAN4-209ENST00000409543 CAMKK2Q96RR4 588 aa27.27■■□□□ 1.96
TSPAN4-209ENST00000409543 GGNBP2Q9H3C7 697 aa27.27■■□□□ 1.96
TSPAN4-209ENST00000409543 MAP3K19Q56UN5 1328 aa27.26■■□□□ 1.95
TSPAN4-209ENST00000409543 EXOC5O00471 708 aa27.26■■□□□ 1.95
TSPAN4-209ENST00000409543 EZH2Q15910 746 aaKnown RBP27.26■■□□□ 1.95
TSPAN4-209ENST00000409543 PARD3Q8TEW0 1356 aa27.25■■□□□ 1.95
TSPAN4-209ENST00000409543 MARCH10Q8NA82 808 aaPredicted RBP27.25■■□□□ 1.95
TSPAN4-209ENST00000409543 CARD14Q9BXL6 1004 aa27.25■■□□□ 1.95
TSPAN4-209ENST00000409543 FBLN1P23142 703 aa27.24■■□□□ 1.95
TSPAN4-209ENST00000409543 HSPA5P11021 654 aaKnown RBP27.23■■□□□ 1.95
TSPAN4-209ENST00000409543 BCL9O00512 1426 aa27.23■■□□□ 1.95
TSPAN4-209ENST00000409543 HOXC9P31274 260 aa27.22■■□□□ 1.95
TSPAN4-209ENST00000409543 AMPHP49418 695 aa27.22■■□□□ 1.95
TSPAN4-209ENST00000409543 KIF20BQ96Q89 1820 aa27.21■■□□□ 1.95
TSPAN4-209ENST00000409543 IL2RBP14784 551 aa27.21■■□□□ 1.95
TSPAN4-209ENST00000409543 TNS2Q63HR2 1409 aa27.2■■□□□ 1.94
TSPAN4-209ENST00000409543 NSD3Q9BZ95 1437 aa27.2■■□□□ 1.94
TSPAN4-209ENST00000409543 SBF2Q86WG5 1849 aa27.2■■□□□ 1.94
TSPAN4-209ENST00000409543 LTV1Q96GA3 475 aaPredicted RBP27.19■■□□□ 1.94
TSPAN4-209ENST00000409543 FAM208AQ9UK61 1670 aaKnown RBP27.19■■□□□ 1.94
TSPAN4-209ENST00000409543 RTL1A6NKG5 1358 aa27.19■■□□□ 1.94
TSPAN4-209ENST00000409543 SRCAPQ6ZRS2 3230 aa27.18■■□□□ 1.94
TSPAN4-209ENST00000409543 RRS1Q15050 365 aaKnown RBP27.17■■□□□ 1.94
TSPAN4-209ENST00000409543 BCL11BQ9C0K0 894 aaPredicted RBP27.17■■□□□ 1.94
TSPAN4-209ENST00000409543 PSDA5PKW4 1024 aaPredicted RBP27.16■■□□□ 1.94
TSPAN4-209ENST00000409543 POLR3GLQ9BT43 218 aa27.16■■□□□ 1.94
TSPAN4-209ENST00000409543 RREB1Q92766 1687 aa27.14■■□□□ 1.94
TSPAN4-209ENST00000409543 PLSCR1O15162 318 aa27.13■■□□□ 1.93
TSPAN4-209ENST00000409543 KIF24Q5T7B8 1368 aa27.12■■□□□ 1.93
TSPAN4-209ENST00000409543 PTF1AQ7RTS3 328 aa27.12■■□□□ 1.93
TSPAN4-209ENST00000409543 CGNL1Q0VF96 1302 aa27.12■■□□□ 1.93
TSPAN4-209ENST00000409543 R3HDM1Q15032 1099 aaKnown RBP27.11■■□□□ 1.93
TSPAN4-209ENST00000409543 RGPD3A6NKT7 1758 aaPredicted RBP27.09■■□□□ 1.93
TSPAN4-209ENST00000409543 RGPD4Q7Z3J3 1758 aa27.09■■□□□ 1.93
TSPAN4-209ENST00000409543 NUP188Q5SRE5 1749 aa27.09■■□□□ 1.93
TSPAN4-209ENST00000409543 INSRP06213 1382 aa27.09■■□□□ 1.93
TSPAN4-209ENST00000409543 NBPF14Q5TI25 921 aa27.08■■□□□ 1.93
TSPAN4-209ENST00000409543 FLT4P35916 1363 aa27.08■■□□□ 1.93
TSPAN4-209ENST00000409543 HSP90AB2PQ58FF8 381 aa27.07■■□□□ 1.92
TSPAN4-209ENST00000409543 RGPD2P0DJD1 1756 aa27.07■■□□□ 1.92
TSPAN4-209ENST00000409543 SMG6Q86US8 1419 aaKnown RBP27.07■■□□□ 1.92
TSPAN4-209ENST00000409543 NBPF6Q5VWK0 638 aa27.06■■□□□ 1.92
TSPAN4-209ENST00000409543 NBPF4Q96M43 638 aa27.06■■□□□ 1.92
TSPAN4-209ENST00000409543 PANK3Q9H999 370 aa27.05■■□□□ 1.92
TSPAN4-209ENST00000409543 KCNQ2O43526 872 aa27.04■■□□□ 1.92
TSPAN4-209ENST00000409543 LRP5O75197 1615 aa27.03■■□□□ 1.92
TSPAN4-209ENST00000409543 NHSQ6T4R5 1651 aa27.03■■□□□ 1.92
TSPAN4-209ENST00000409543 EMILIN1Q9Y6C2 1016 aa27.03■■□□□ 1.92
TSPAN4-209ENST00000409543 DDX54Q8TDD1 881 aaKnown RBP27.02■■□□□ 1.92
TSPAN4-209ENST00000409543 ACSBG1Q96GR2 724 aa27.02■■□□□ 1.92
TSPAN4-209ENST00000409543 PROM2Q8N271 834 aa27.01■■□□□ 1.91
TSPAN4-209ENST00000409543 ZCRB1Q8TBF4 217 aaKnown RBP27■■□□□ 1.91
TSPAN4-209ENST00000409543 MEGF6O75095 1541 aa27■■□□□ 1.91
TSPAN4-209ENST00000409543 USHBP1Q8N6Y0 703 aa26.99■■□□□ 1.91
TSPAN4-209ENST00000409543 ANKRD26Q9UPS8 1709 aa26.99■■□□□ 1.91
TSPAN4-209ENST00000409543 PPM1GO15355 546 aaPredicted RBP26.98■■□□□ 1.91
TSPAN4-209ENST00000409543 MAP2P11137 1827 aaKnown RBP26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms