RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PHRF1Q9P1Y6 1649 aaKnown RBP17.98■□□□□ 0.47
LIMS1-204ENST00000409441 MEX3CQ5U5Q3 659 aaKnown RBP17.98■□□□□ 0.47
LIMS1-204ENST00000409441 IP6K1Q92551 441 aa17.98■□□□□ 0.47
LIMS1-204ENST00000409441 AXIN2Q9Y2T1 843 aa17.98■□□□□ 0.47
LIMS1-204ENST00000409441 HOXC9P31274 260 aa17.97■□□□□ 0.47
LIMS1-204ENST00000409441 NGLY1Q96IV0 654 aa17.97■□□□□ 0.47
LIMS1-204ENST00000409441 SUPT16HQ9Y5B9 1047 aaKnown RBP17.97■□□□□ 0.47
LIMS1-204ENST00000409441 HSP90AB2PQ58FF8 381 aa17.96■□□□□ 0.47
LIMS1-204ENST00000409441 C8orf37Q96NL8 207 aa17.96■□□□□ 0.47
LIMS1-204ENST00000409441 MRS2Q9HD23 443 aa17.96■□□□□ 0.47
LIMS1-204ENST00000409441 LRP6O75581 1613 aa17.96■□□□□ 0.47
LIMS1-204ENST00000409441 ABCA3Q99758 1704 aa17.95■□□□□ 0.46
LIMS1-204ENST00000409441 HNRNPUQ00839 825 aaKnown RBP eCLIP17.94■□□□□ 0.46
LIMS1-204ENST00000409441 KIF24Q5T7B8 1368 aa17.94■□□□□ 0.46
LIMS1-204ENST00000409441 BTG4Q9NY30 223 aa17.94■□□□□ 0.46
LIMS1-204ENST00000409441 MAP2P11137 1827 aaKnown RBP17.94■□□□□ 0.46
LIMS1-204ENST00000409441 FLT4P35916 1363 aa17.93■□□□□ 0.46
LIMS1-204ENST00000409441 CCDC184Q52MB2 194 aa17.93■□□□□ 0.46
LIMS1-204ENST00000409441 LTV1Q96GA3 475 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-204ENST00000409441 CFAP53Q96M91 514 aa17.92■□□□□ 0.46
LIMS1-204ENST00000409441 RTL1A6NKG5 1358 aa17.92■□□□□ 0.46
LIMS1-204ENST00000409441 SMG6Q86US8 1419 aaKnown RBP17.92■□□□□ 0.46
LIMS1-204ENST00000409441 EVA1CP58658 441 aa17.91■□□□□ 0.46
LIMS1-204ENST00000409441 INSRP06213 1382 aa17.91■□□□□ 0.46
LIMS1-204ENST00000409441 FNBP4Q8N3X1 1017 aaPredicted RBP17.9■□□□□ 0.46
LIMS1-204ENST00000409441 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
LIMS1-204ENST00000409441 ANKRD24Q8TF21 1146 aa17.9■□□□□ 0.46
LIMS1-204ENST00000409441 LTN1O94822 1766 aa17.89■□□□□ 0.46
LIMS1-204ENST00000409441 STRN4Q9NRL3 753 aa17.89■□□□□ 0.45
LIMS1-204ENST00000409441 BLMP54132 1417 aaPredicted RBP17.89■□□□□ 0.45
LIMS1-204ENST00000409441 CAMTA1Q9Y6Y1 1673 aa17.89■□□□□ 0.45
LIMS1-204ENST00000409441 PEAK1Q9H792 1746 aa17.89■□□□□ 0.45
LIMS1-204ENST00000409441 DIAPH1O60610 1272 aaKnown RBP17.88■□□□□ 0.45
LIMS1-204ENST00000409441 EIF4A2Q14240 407 aaKnown RBP17.88■□□□□ 0.45
LIMS1-204ENST00000409441 CDK12Q9NYV4 1490 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-204ENST00000409441 COL18A1P39060 1754 aa17.88■□□□□ 0.45
LIMS1-204ENST00000409441 CSB-PGBD3P0DP91 1061 aa17.87■□□□□ 0.45
LIMS1-204ENST00000409441 IL13P35225 146 aa17.87■□□□□ 0.45
LIMS1-204ENST00000409441 UNC5CLQ8IV45 518 aa17.87■□□□□ 0.45
LIMS1-204ENST00000409441 USP21Q9UK80 565 aa17.87■□□□□ 0.45
LIMS1-204ENST00000409441 COL14A1Q05707 1796 aaKnown RBP17.87■□□□□ 0.45
LIMS1-204ENST00000409441 ERBB3P21860 1342 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 AFF2P51816 1311 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 ZBED9Q6R2W3 1325 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 SLIT2O94813 1529 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 NEFLP07196 543 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 LARP1Q6PKG0 1096 aaKnown RBP17.86■□□□□ 0.45
LIMS1-204ENST00000409441 ABCC6O95255 1503 aa17.86■□□□□ 0.45
LIMS1-204ENST00000409441 FAM9BQ8IZU0 186 aa17.85■□□□□ 0.45
LIMS1-204ENST00000409441 LMO7Q8WWI1 1683 aa17.85■□□□□ 0.45
LIMS1-204ENST00000409441 COL5A2P05997 1499 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-204ENST00000409441 BCL9LQ86UU0 1499 aa17.84■□□□□ 0.45
LIMS1-204ENST00000409441 TOM1L2Q6ZVM7 507 aa17.84■□□□□ 0.45
LIMS1-204ENST00000409441 NLRP2Q9NX02 1062 aa17.84■□□□□ 0.45
LIMS1-204ENST00000409441 NUDCQ9Y266 331 aa17.84■□□□□ 0.45
LIMS1-204ENST00000409441 WDR17Q8IZU2 1322 aa17.84■□□□□ 0.45
LIMS1-204ENST00000409441 NBPF6Q5VWK0 638 aa17.83■□□□□ 0.45
LIMS1-204ENST00000409441 NBPF4Q96M43 638 aa17.83■□□□□ 0.45
LIMS1-204ENST00000409441 EYA1Q99502 592 aa17.83■□□□□ 0.45
LIMS1-204ENST00000409441 U2SURPO15042 1029 aaKnown RBP17.83■□□□□ 0.44
LIMS1-204ENST00000409441 COL3A1P02461 1466 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-204ENST00000409441 RGPD5Q99666 1765 aa17.82■□□□□ 0.44
LIMS1-204ENST00000409441 CCDC9Q9Y3X0 531 aaKnown RBP17.81■□□□□ 0.44
LIMS1-204ENST00000409441 U2AF1L5P0DN76 240 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-204ENST00000409441 U2AF1Q01081 240 aaKnown RBP eCLIP17.8■□□□□ 0.44
LIMS1-204ENST00000409441 VPS72Q15906 364 aa17.8■□□□□ 0.44
LIMS1-204ENST00000409441 ZNF772Q68DY9 489 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-204ENST00000409441 PNISRQ8TF01 805 aaKnown RBP17.8■□□□□ 0.44
LIMS1-204ENST00000409441 CARD10Q9BWT7 1032 aa17.8■□□□□ 0.44
LIMS1-204ENST00000409441 QTRT2Q9H974 415 aaKnown RBP17.8■□□□□ 0.44
LIMS1-204ENST00000409441 USP35Q9P2H5 1018 aa17.8■□□□□ 0.44
LIMS1-204ENST00000409441 PLCH1Q4KWH8 1693 aa17.8■□□□□ 0.44
LIMS1-204ENST00000409441 FKBP8Q14318 412 aa17.79■□□□□ 0.44
LIMS1-204ENST00000409441 USHBP1Q8N6Y0 703 aa17.79■□□□□ 0.44
LIMS1-204ENST00000409441 TRPC5Q9UL62 973 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-204ENST00000409441 CRB1P82279 1406 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 NWD2Q9ULI1 1742 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 SPATA31A5Q5VU36 1347 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 SPATA31A7Q8IWB4 1347 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 IGSF1Q8N6C5 1336 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 WDR43Q15061 677 aaKnown RBP eCLIP17.78■□□□□ 0.44
LIMS1-204ENST00000409441 SULT6B1Q6IMI4 303 aa17.78■□□□□ 0.44
LIMS1-204ENST00000409441 SPATA31A1Q5TZJ5 1347 aa17.77■□□□□ 0.44
LIMS1-204ENST00000409441 HMOX1P09601 288 aa17.77■□□□□ 0.44
LIMS1-204ENST00000409441 RGS17Q9UGC6 210 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-204ENST00000409441 ADAMTS8Q9UP79 889 aa17.77■□□□□ 0.44
LIMS1-204ENST00000409441 AEBP1Q8IUX7 1158 aa17.76■□□□□ 0.43
LIMS1-204ENST00000409441 TCP11L2Q8N4U5 519 aa17.76■□□□□ 0.43
LIMS1-204ENST00000409441 GJD4Q96KN9 370 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-204ENST00000409441 NRAPQ86VF7 1730 aa17.75■□□□□ 0.43
LIMS1-204ENST00000409441 ATRNO75882 1429 aa17.74■□□□□ 0.43
LIMS1-204ENST00000409441 FCHSD2O94868 740 aa17.74■□□□□ 0.43
LIMS1-204ENST00000409441 THRAP3Q9Y2W1 955 aaKnown RBP17.74■□□□□ 0.43
LIMS1-204ENST00000409441 IL2RBP14784 551 aa17.72■□□□□ 0.43
LIMS1-204ENST00000409441 BARGINQ6ZT62 677 aa17.72■□□□□ 0.43
LIMS1-204ENST00000409441 RAPGEF4Q8WZA2 1011 aa17.72■□□□□ 0.43
LIMS1-204ENST00000409441 RSPH6AQ9H0K4 717 aa17.72■□□□□ 0.43
LIMS1-204ENST00000409441 KDRP35968 1356 aa17.72■□□□□ 0.43
LIMS1-204ENST00000409441 FAM98CQ17RN3 349 aaKnown RBP17.71■□□□□ 0.43
LIMS1-204ENST00000409441 RGPD2P0DJD1 1756 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms