RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 RGPD1P0DJD0 1748 aa27.6■■■□□ 2.01
VSX1-203ENST00000409285 CCER2I3L3R5 266 aa27.6■■■□□ 2.01
VSX1-203ENST00000409285 PLEKHG5O94827 1062 aa27.59■■■□□ 2.01
VSX1-203ENST00000409285 ZC3H6P61129 1189 aaKnown RBP27.59■■■□□ 2.01
VSX1-203ENST00000409285 NUTM2BA6NNL0 878 aaPredicted RBP27.58■■■□□ 2.01
VSX1-203ENST00000409285 NUTM2EB1AL46 878 aaPredicted RBP27.58■■■□□ 2.01
VSX1-203ENST00000409285 NUTM2AQ8IVF1 878 aaPredicted RBP27.58■■■□□ 2.01
VSX1-203ENST00000409285 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.58■■■□□ 2.01
VSX1-203ENST00000409285 CAMTA1Q9Y6Y1 1673 aa27.58■■■□□ 2.01
VSX1-203ENST00000409285 IP6K1Q92551 441 aa27.57■■■□□ 2
VSX1-203ENST00000409285 RGPD2P0DJD1 1756 aa27.57■■■□□ 2
VSX1-203ENST00000409285 HOXC9P31274 260 aa27.57■■■□□ 2
VSX1-203ENST00000409285 AMPHP49418 695 aa27.57■■■□□ 2
VSX1-203ENST00000409285 PRDM11Q9NQV5 511 aa27.56■■■□□ 2
VSX1-203ENST00000409285 CFAP53Q96M91 514 aa27.55■■■□□ 2
VSX1-203ENST00000409285 PPM1GO15355 546 aaPredicted RBP27.53■■■□□ 2
VSX1-203ENST00000409285 MEX3CQ5U5Q3 659 aaKnown RBP27.53■■■□□ 2
VSX1-203ENST00000409285 PHF23Q9BUL5 403 aaPredicted RBP27.53■■■□□ 2
VSX1-203ENST00000409285 SLIT2O94813 1529 aa27.52■■■□□ 2
VSX1-203ENST00000409285 COL5A2P05997 1499 aaPredicted RBP27.52■■■□□ 2
VSX1-203ENST00000409285 HSP90AB2PQ58FF8 381 aa27.51■■■□□ 2
VSX1-203ENST00000409285 FAM83GA6ND36 823 aa27.5■■□□□ 1.99
VSX1-203ENST00000409285 CHRNA2Q15822 529 aa27.49■■□□□ 1.99
VSX1-203ENST00000409285 AXIN2Q9Y2T1 843 aa27.49■■□□□ 1.99
VSX1-203ENST00000409285 ERBB3P21860 1342 aa27.48■■□□□ 1.99
VSX1-203ENST00000409285 ADAMTS2O95450 1211 aa27.48■■□□□ 1.99
VSX1-203ENST00000409285 CCDC184Q52MB2 194 aa27.48■■□□□ 1.99
VSX1-203ENST00000409285 MRS2Q9HD23 443 aa27.48■■□□□ 1.99
VSX1-203ENST00000409285 ZBTB7CA1YPR0 619 aa27.46■■□□□ 1.99
VSX1-203ENST00000409285 DIAPH1O60610 1272 aaKnown RBP27.45■■□□□ 1.99
VSX1-203ENST00000409285 WNK3Q9BYP7 1800 aa27.45■■□□□ 1.99
VSX1-203ENST00000409285 NCAPD2Q15021 1401 aa27.45■■□□□ 1.98
VSX1-203ENST00000409285 IL13P35225 146 aa27.44■■□□□ 1.98
VSX1-203ENST00000409285 EIF4A2Q14240 407 aaKnown RBP27.44■■□□□ 1.98
VSX1-203ENST00000409285 C8orf37Q96NL8 207 aa27.42■■□□□ 1.98
VSX1-203ENST00000409285 FNBP4Q8N3X1 1017 aaPredicted RBP27.41■■□□□ 1.98
VSX1-203ENST00000409285 ANKRD24Q8TF21 1146 aa27.41■■□□□ 1.98
VSX1-203ENST00000409285 BTG4Q9NY30 223 aa27.41■■□□□ 1.98
VSX1-203ENST00000409285 WDR17Q8IZU2 1322 aa27.41■■□□□ 1.98
VSX1-203ENST00000409285 PNISRQ8TF01 805 aaKnown RBP27.4■■□□□ 1.98
VSX1-203ENST00000409285 NUDCQ9Y266 331 aa27.4■■□□□ 1.98
VSX1-203ENST00000409285 BCL9LQ86UU0 1499 aa27.39■■□□□ 1.98
VSX1-203ENST00000409285 IGSF1Q8N6C5 1336 aa27.39■■□□□ 1.98
VSX1-203ENST00000409285 RGS17Q9UGC6 210 aaPredicted RBP27.38■■□□□ 1.97
VSX1-203ENST00000409285 KDRP35968 1356 aa27.38■■□□□ 1.97
VSX1-203ENST00000409285 NGLY1Q96IV0 654 aa27.38■■□□□ 1.97
VSX1-203ENST00000409285 CRB1P82279 1406 aa27.37■■□□□ 1.97
VSX1-203ENST00000409285 PARP4Q9UKK3 1724 aaKnown RBP27.37■■□□□ 1.97
VSX1-203ENST00000409285 AFF2P51816 1311 aa27.36■■□□□ 1.97
VSX1-203ENST00000409285 ZNF772Q68DY9 489 aaPredicted RBP27.35■■□□□ 1.97
VSX1-203ENST00000409285 LTV1Q96GA3 475 aaPredicted RBP27.34■■□□□ 1.97
VSX1-203ENST00000409285 WDR43Q15061 677 aaKnown RBP eCLIP27.33■■□□□ 1.97
VSX1-203ENST00000409285 EYA1Q99502 592 aa27.33■■□□□ 1.97
VSX1-203ENST00000409285 PLEKHG2Q9H7P9 1386 aa27.33■■□□□ 1.97
VSX1-203ENST00000409285 UNC5CLQ8IV45 518 aa27.32■■□□□ 1.96
VSX1-203ENST00000409285 NBPF6Q5VWK0 638 aa27.32■■□□□ 1.96
VSX1-203ENST00000409285 NBPF4Q96M43 638 aa27.32■■□□□ 1.96
VSX1-203ENST00000409285 PKD1L3Q7Z443 1732 aa27.31■■□□□ 1.96
VSX1-203ENST00000409285 U2SURPO15042 1029 aaKnown RBP27.31■■□□□ 1.96
VSX1-203ENST00000409285 EVA1CP58658 441 aa27.31■■□□□ 1.96
VSX1-203ENST00000409285 CSB-PGBD3P0DP91 1061 aa27.3■■□□□ 1.96
VSX1-203ENST00000409285 U2AF1L5P0DN76 240 aaPredicted RBP27.29■■□□□ 1.96
VSX1-203ENST00000409285 U2AF1Q01081 240 aaKnown RBP eCLIP27.29■■□□□ 1.96
VSX1-203ENST00000409285 LARP1Q6PKG0 1096 aaKnown RBP27.29■■□□□ 1.96
VSX1-203ENST00000409285 CARD10Q9BWT7 1032 aa27.29■■□□□ 1.96
VSX1-203ENST00000409285 STRN4Q9NRL3 753 aa27.29■■□□□ 1.96
VSX1-203ENST00000409285 ADAMTS8Q9UP79 889 aa27.28■■□□□ 1.96
VSX1-203ENST00000409285 FCHSD2O94868 740 aa27.27■■□□□ 1.96
VSX1-203ENST00000409285 POTEAQ6S8J7 498 aa27.27■■□□□ 1.96
VSX1-203ENST00000409285 TOM1L2Q6ZVM7 507 aa27.27■■□□□ 1.96
VSX1-203ENST00000409285 USP21Q9UK80 565 aa27.27■■□□□ 1.96
VSX1-203ENST00000409285 ATRNO75882 1429 aa27.27■■□□□ 1.96
VSX1-203ENST00000409285 DLG5Q8TDM6 1919 aa27.26■■□□□ 1.96
VSX1-203ENST00000409285 RSPH6AQ9H0K4 717 aa27.26■■□□□ 1.95
VSX1-203ENST00000409285 NLRP2Q9NX02 1062 aa27.26■■□□□ 1.95
VSX1-203ENST00000409285 SHANK3Q9BYB0 1731 aa27.26■■□□□ 1.95
VSX1-203ENST00000409285 VPS72Q15906 364 aa27.25■■□□□ 1.95
VSX1-203ENST00000409285 GLI3P10071 1580 aa27.25■■□□□ 1.95
VSX1-203ENST00000409285 SULT6B1Q6IMI4 303 aa27.25■■□□□ 1.95
VSX1-203ENST00000409285 SPATA31A1Q5TZJ5 1347 aa27.24■■□□□ 1.95
VSX1-203ENST00000409285 SPATA31A5Q5VU36 1347 aa27.24■■□□□ 1.95
VSX1-203ENST00000409285 SPATA31A7Q8IWB4 1347 aa27.24■■□□□ 1.95
VSX1-203ENST00000409285 PNNQ9H307 717 aaKnown RBP27.24■■□□□ 1.95
VSX1-203ENST00000409285 VIRMAQ69YN4 1812 aaKnown RBP27.24■■□□□ 1.95
VSX1-203ENST00000409285 AEBP1Q8IUX7 1158 aa27.23■■□□□ 1.95
VSX1-203ENST00000409285 FAM9BQ8IZU0 186 aa27.23■■□□□ 1.95
VSX1-203ENST00000409285 DISP2A7MBM2 1401 aa27.22■■□□□ 1.95
VSX1-203ENST00000409285 THSD7AQ9UPZ6 1657 aa27.22■■□□□ 1.95
VSX1-203ENST00000409285 HMOX1P09601 288 aa27.22■■□□□ 1.95
VSX1-203ENST00000409285 THRAP3Q9Y2W1 955 aaKnown RBP27.22■■□□□ 1.95
VSX1-203ENST00000409285 MEGF6O75095 1541 aa27.22■■□□□ 1.95
VSX1-203ENST00000409285 LRRC37A3O60309 1634 aa27.2■■□□□ 1.95
VSX1-203ENST00000409285 USHBP1Q8N6Y0 703 aa27.2■■□□□ 1.95
VSX1-203ENST00000409285 PLEKHF1Q96S99 279 aa27.2■■□□□ 1.95
VSX1-203ENST00000409285 QTRT2Q9H974 415 aaKnown RBP27.2■■□□□ 1.95
VSX1-203ENST00000409285 TRPC5Q9UL62 973 aaPredicted RBP27.19■■□□□ 1.94
VSX1-203ENST00000409285 OVOS2A0A0G2JMS6 1433 aa27.19■■□□□ 1.94
VSX1-203ENST00000409285 ILDR2Q71H61 639 aa27.19■■□□□ 1.94
VSX1-203ENST00000409285 TCP11L2Q8N4U5 519 aa27.19■■□□□ 1.94
VSX1-203ENST00000409285 PRKAR2BP31323 418 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms