RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TERF2IPQ9NYB0 399 aa27.16■■□□□ 1.94
SMARCB1-204ENST00000407422 USP47Q96K76 1375 aa27.16■■□□□ 1.94
SMARCB1-204ENST00000407422 TNS1Q9HBL0 1735 aaKnown RBP27.16■■□□□ 1.94
SMARCB1-204ENST00000407422 PDE3BQ13370 1112 aa27.16■■□□□ 1.94
SMARCB1-204ENST00000407422 EDC4Q6P2E9 1401 aaKnown RBP27.15■■□□□ 1.94
SMARCB1-204ENST00000407422 BAG6P46379 1132 aa27.15■■□□□ 1.94
SMARCB1-204ENST00000407422 FAM196AQ6ZSG2 479 aa27.15■■□□□ 1.94
SMARCB1-204ENST00000407422 TOM1L2Q6ZVM7 507 aa27.15■■□□□ 1.94
SMARCB1-204ENST00000407422 PARP4Q9UKK3 1724 aaKnown RBP27.15■■□□□ 1.94
SMARCB1-204ENST00000407422 WDR17Q8IZU2 1322 aa27.14■■□□□ 1.93
SMARCB1-204ENST00000407422 TRIM37O94972 964 aa27.12■■□□□ 1.93
SMARCB1-204ENST00000407422 EN1Q05925 392 aaPredicted RBP27.12■■□□□ 1.93
SMARCB1-204ENST00000407422 CLSPNQ9HAW4 1339 aa27.11■■□□□ 1.93
SMARCB1-204ENST00000407422 SLC24A1O60721 1099 aa27.11■■□□□ 1.93
SMARCB1-204ENST00000407422 LTN1O94822 1766 aa27.1■■□□□ 1.93
SMARCB1-204ENST00000407422 NINLQ9Y2I6 1382 aa27.1■■□□□ 1.93
SMARCB1-204ENST00000407422 TIMELESSQ9UNS1 1208 aa27.09■■□□□ 1.93
SMARCB1-204ENST00000407422 WNK3Q9BYP7 1800 aa27.09■■□□□ 1.93
SMARCB1-204ENST00000407422 CSB-PGBD3P0DP91 1061 aa27.08■■□□□ 1.93
SMARCB1-204ENST00000407422 LRRC37A3O60309 1634 aa27.08■■□□□ 1.92
SMARCB1-204ENST00000407422 DISP2A7MBM2 1401 aa27.07■■□□□ 1.92
SMARCB1-204ENST00000407422 OVOS2A0A0J9YW53 1432 aa27.06■■□□□ 1.92
SMARCB1-204ENST00000407422 OVOS2Q6IE36 1432 aa27.06■■□□□ 1.92
SMARCB1-204ENST00000407422 TMF1P82094 1093 aa27.06■■□□□ 1.92
SMARCB1-204ENST00000407422 ABCC6O95255 1503 aa27.06■■□□□ 1.92
SMARCB1-204ENST00000407422 CARD10Q9BWT7 1032 aa27.05■■□□□ 1.92
SMARCB1-204ENST00000407422 PEAK1Q9H792 1746 aa27.03■■□□□ 1.92
SMARCB1-204ENST00000407422 EZH2Q15910 746 aaKnown RBP27.03■■□□□ 1.92
SMARCB1-204ENST00000407422 DDB1Q16531 1140 aa27.03■■□□□ 1.92
SMARCB1-204ENST00000407422 APBA3O96018 575 aa27.02■■□□□ 1.92
SMARCB1-204ENST00000407422 ANKRD36BQ8N2N9 1353 aa27.02■■□□□ 1.92
SMARCB1-204ENST00000407422 CAMKK2Q96RR4 588 aa27.01■■□□□ 1.91
SMARCB1-204ENST00000407422 ERBB3P21860 1342 aa27■■□□□ 1.91
SMARCB1-204ENST00000407422 PSDA5PKW4 1024 aaPredicted RBP26.99■■□□□ 1.91
SMARCB1-204ENST00000407422 OVOS2A0A0G2JMS6 1433 aa26.99■■□□□ 1.91
SMARCB1-204ENST00000407422 SBF2Q86WG5 1849 aa26.99■■□□□ 1.91
SMARCB1-204ENST00000407422 CDCA7Q9BWT1 371 aaPredicted RBP26.98■■□□□ 1.91
SMARCB1-204ENST00000407422 CCER1Q8TC90 406 aaPredicted RBP26.98■■□□□ 1.91
SMARCB1-204ENST00000407422 COG3Q96JB2 828 aa26.97■■□□□ 1.91
SMARCB1-204ENST00000407422 CCDC7Q96M83 1385 aa26.96■■□□□ 1.91
SMARCB1-204ENST00000407422 FBLN1P23142 703 aa26.96■■□□□ 1.91
SMARCB1-204ENST00000407422 MARCH10Q8NA82 808 aaPredicted RBP26.96■■□□□ 1.91
SMARCB1-204ENST00000407422 NLRP2Q9NX02 1062 aa26.96■■□□□ 1.91
SMARCB1-204ENST00000407422 ANKRD24Q8TF21 1146 aa26.95■■□□□ 1.91
SMARCB1-204ENST00000407422 CDCA8Q53HL2 280 aa26.94■■□□□ 1.9
SMARCB1-204ENST00000407422 MYOM1P52179 1685 aa26.93■■□□□ 1.9
SMARCB1-204ENST00000407422 C11orf95C9JLR9 678 aaPredicted RBP26.93■■□□□ 1.9
SMARCB1-204ENST00000407422 RREB1Q92766 1687 aa26.92■■□□□ 1.9
SMARCB1-204ENST00000407422 FYB1O15117 783 aa26.92■■□□□ 1.9
SMARCB1-204ENST00000407422 IP6K1Q92551 441 aa26.92■■□□□ 1.9
SMARCB1-204ENST00000407422 EXOC5O00471 708 aa26.91■■□□□ 1.9
SMARCB1-204ENST00000407422 PTF1AQ7RTS3 328 aa26.91■■□□□ 1.9
SMARCB1-204ENST00000407422 GGNBP2Q9H3C7 697 aa26.91■■□□□ 1.9
SMARCB1-204ENST00000407422 PARD3Q8TEW0 1356 aa26.91■■□□□ 1.9
SMARCB1-204ENST00000407422 MAP3K19Q56UN5 1328 aa26.91■■□□□ 1.9
SMARCB1-204ENST00000407422 R3HDM1Q15032 1099 aaKnown RBP26.9■■□□□ 1.9
SMARCB1-204ENST00000407422 LTV1Q96GA3 475 aaPredicted RBP26.89■■□□□ 1.9
SMARCB1-204ENST00000407422 NUP188Q5SRE5 1749 aa26.89■■□□□ 1.89
SMARCB1-204ENST00000407422 KIF20BQ96Q89 1820 aa26.88■■□□□ 1.89
SMARCB1-204ENST00000407422 TNS2Q63HR2 1409 aa26.88■■□□□ 1.89
SMARCB1-204ENST00000407422 BCL9O00512 1426 aa26.87■■□□□ 1.89
SMARCB1-204ENST00000407422 CARD14Q9BXL6 1004 aa26.87■■□□□ 1.89
SMARCB1-204ENST00000407422 IL2RBP14784 551 aa26.86■■□□□ 1.89
SMARCB1-204ENST00000407422 HOXC9P31274 260 aa26.86■■□□□ 1.89
SMARCB1-204ENST00000407422 BCL11BQ9C0K0 894 aaPredicted RBP26.86■■□□□ 1.89
SMARCB1-204ENST00000407422 AMPHP49418 695 aa26.85■■□□□ 1.89
SMARCB1-204ENST00000407422 RRS1Q15050 365 aaKnown RBP26.85■■□□□ 1.89
SMARCB1-204ENST00000407422 RGPD2P0DJD1 1756 aa26.84■■□□□ 1.89
SMARCB1-204ENST00000407422 FAM208AQ9UK61 1670 aaKnown RBP26.84■■□□□ 1.89
SMARCB1-204ENST00000407422 LRP5O75197 1615 aa26.83■■□□□ 1.89
SMARCB1-204ENST00000407422 NSD3Q9BZ95 1437 aa26.82■■□□□ 1.88
SMARCB1-204ENST00000407422 RGPD3A6NKT7 1758 aaPredicted RBP26.82■■□□□ 1.88
SMARCB1-204ENST00000407422 RGPD4Q7Z3J3 1758 aa26.82■■□□□ 1.88
SMARCB1-204ENST00000407422 PLSCR1O15162 318 aa26.8■■□□□ 1.88
SMARCB1-204ENST00000407422 KAT6BQ8WYB5 2073 aa26.8■■□□□ 1.88
SMARCB1-204ENST00000407422 POLR3GLQ9BT43 218 aa26.79■■□□□ 1.88
SMARCB1-204ENST00000407422 HSPA5P11021 654 aaKnown RBP26.79■■□□□ 1.88
SMARCB1-204ENST00000407422 EIF4G2P78344 907 aaKnown RBP eCLIP26.79■■□□□ 1.88
SMARCB1-204ENST00000407422 KCNQ2O43526 872 aa26.78■■□□□ 1.88
SMARCB1-204ENST00000407422 RTL1A6NKG5 1358 aa26.77■■□□□ 1.88
SMARCB1-204ENST00000407422 NBPF14Q5TI25 921 aa26.76■■□□□ 1.87
SMARCB1-204ENST00000407422 PROM2Q8N271 834 aa26.76■■□□□ 1.87
SMARCB1-204ENST00000407422 ACSBG1Q96GR2 724 aa26.76■■□□□ 1.87
SMARCB1-204ENST00000407422 NHSQ6T4R5 1651 aa26.75■■□□□ 1.87
SMARCB1-204ENST00000407422 HSP90AB2PQ58FF8 381 aa26.72■■□□□ 1.87
SMARCB1-204ENST00000407422 NBPF6Q5VWK0 638 aa26.72■■□□□ 1.87
SMARCB1-204ENST00000407422 NBPF4Q96M43 638 aa26.72■■□□□ 1.87
SMARCB1-204ENST00000407422 DDX54Q8TDD1 881 aaKnown RBP26.72■■□□□ 1.87
SMARCB1-204ENST00000407422 USHBP1Q8N6Y0 703 aa26.7■■□□□ 1.86
SMARCB1-204ENST00000407422 ANO8Q9HCE9 1232 aaPredicted RBP26.7■■□□□ 1.86
SMARCB1-204ENST00000407422 MEGF6O75095 1541 aa26.7■■□□□ 1.86
SMARCB1-204ENST00000407422 EMILIN1Q9Y6C2 1016 aa26.69■■□□□ 1.86
SMARCB1-204ENST00000407422 BTAF1O14981 1849 aa26.69■■□□□ 1.86
SMARCB1-204ENST00000407422 SHANK3Q9BYB0 1731 aa26.69■■□□□ 1.86
SMARCB1-204ENST00000407422 INSRP06213 1382 aa26.69■■□□□ 1.86
SMARCB1-204ENST00000407422 FLT4P35916 1363 aa26.69■■□□□ 1.86
SMARCB1-204ENST00000407422 CGNL1Q0VF96 1302 aa26.68■■□□□ 1.86
SMARCB1-204ENST00000407422 TXNRD1Q16881 649 aa26.68■■□□□ 1.86
SMARCB1-204ENST00000407422 SMG6Q86US8 1419 aaKnown RBP26.68■■□□□ 1.86
SMARCB1-204ENST00000407422 MAP2P11137 1827 aaKnown RBP26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms