RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 ATP5J2-PTCD1G3V325 749 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ADH1BP00325 375 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 MFAP1P55081 439 aaKnown RBP8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 MAP7D1Q3KQU3 841 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 LARP1Q6PKG0 1096 aaKnown RBP8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 RNF135Q8IUD6 432 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ARHGAP9Q9BRR9 750 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 PCDHB9Q9Y5E1 797 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZPR1O75312 459 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20EP86478 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20CP86479 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20DP86480 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20BP86481 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20AP86496 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 TREML4Q6UXN2 200 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZBTB33Q86T24 672 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 FAM160A2Q8N612 972 aaPredicted RBP8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 CEP126Q9P2H0 1117 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PIK3CDO00329 1044 aa8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 TRIM50Q86XT4 487 aa8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 NOVA2Q9UNW9 492 aaKnown RBP8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 RNF223E7ERA6 249 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 EML3Q32P44 896 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 SPRYD7Q5W111 196 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZNF598Q86UK7 904 aaKnown RBP8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 UNC93B1Q9H1C4 597 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 MKRN1Q9UHC7 482 aaKnown RBP8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 IVNS1ABPQ9Y6Y0 642 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L15C9J2P7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L10C9JJH3 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L13C9JLJ4 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L12C9JPN9 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L11C9JVI0 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L21D6R901 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L18D6R9N7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L22D6RA61 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L17D6RBQ6 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L19D6RCP7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L20D6RJB6 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 ATP1A2P50993 1020 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L24Q0WX57 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 LCE2AQ5TA79 106 aaPredicted RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 DZIP3Q86Y13 1208 aaKnown RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 PLPP7Q8NBV4 271 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 ADAM32Q8TC27 787 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 CCER1Q8TC90 406 aaPredicted RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 GNEQ9Y223 722 aaKnown RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 RASA1P20936 1047 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 NCOA4Q13772 614 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 RNF20Q5VTR2 975 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 SND1Q7KZF4 910 aaKnown RBP eCLIP8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC125Q86Z20 511 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC24Q8N4L8 307 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM174AQ8TBP5 190 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 EMID1Q96A84 441 aaPredicted RBP8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 SLC6A16Q9GZN6 736 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 PRDM9Q9NQV7 894 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM187AA6NFU0 413 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC27Q2M243 656 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 TMEM164Q5U3C3 297 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 SH3BP5LQ7L8J4 393 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 BPHLQ86WA6 291 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 RGS22Q8NE09 1264 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM200AQ8TCP9 573 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 CDCA7Q9BWT1 371 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 ZMIZ1Q9ULJ6 1067 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 DEPDC4Q8N2C3 294 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 PHTF2Q8N3S3 785 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 STK32AQ8WU08 396 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 CHIC2Q9UKJ5 165 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 CDV3Q9UKY7 258 aaKnown RBP8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 NOD1Q9Y239 953 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 RBM19Q9Y4C8 960 aaKnown RBP8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 TLL1O43897 1013 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 PTK7Q13308 1070 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 SWI5Q1ZZU3 235 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 NBPF20Q3BBV1 942 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 ZNF697Q5TEC3 545 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 ANKLE1Q8NAG6 615 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 SIRT1Q96EB6 747 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 OCSTAMPQ9BR26 566 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 DOLKQ9UPQ8 538 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 CARNS1A5YM72 827 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 AGERQ15109 404 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 CRTC2Q53ET0 693 aaPredicted RBP8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 ANKMY2Q8IV38 441 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 CLP1Q92989 425 aaKnown RBP8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 TRIM52Q96A61 297 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 SLC10A4Q96EP9 437 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 MTMR7Q9Y216 660 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 MAGEB6P1A0A0J9YX57 407 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 GDF9O60383 454 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 ARID4AP29374 1257 aaPredicted RBP8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 LARGE2Q8N3Y3 721 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 CARD14Q9BXL6 1004 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 AAASQ9NRG9 546 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 DNAAF2Q9NVR5 837 aaKnown RBP8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 TNFRSF10AO00220 468 aa8.02□□□□□ -1.13
HMGB3P18-201ENST00000406327 ST8SIA5O15466 376 aa8.02□□□□□ -1.13
HMGB3P18-201ENST00000406327 LIAT1Q6ZQX7 453 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms