RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 ATP5J2-PTCD1G3V325 749 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ADH1BP00325 375 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 MFAP1P55081 439 aaKnown RBP8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 MAP7D1Q3KQU3 841 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 LARP1Q6PKG0 1096 aaKnown RBP8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 RNF135Q8IUD6 432 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ARHGAP9Q9BRR9 750 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 PCDHB9Q9Y5E1 797 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZPR1O75312 459 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20EP86478 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20CP86479 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20DP86480 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20BP86481 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PRR20AP86496 221 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 TREML4Q6UXN2 200 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZBTB33Q86T24 672 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 FAM160A2Q8N612 972 aaPredicted RBP8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 CEP126Q9P2H0 1117 aa8.12□□□□□ -1.11
HMGB3P18-201ENST00000406327 PIK3CDO00329 1044 aa8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 TRIM50Q86XT4 487 aa8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 NOVA2Q9UNW9 492 aaKnown RBP8.11□□□□□ -1.11
HMGB3P18-201ENST00000406327 RNF223E7ERA6 249 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 EML3Q32P44 896 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 SPRYD7Q5W111 196 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 ZNF598Q86UK7 904 aaKnown RBP8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 UNC93B1Q9H1C4 597 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 MKRN1Q9UHC7 482 aaKnown RBP8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 IVNS1ABPQ9Y6Y0 642 aa8.1□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L15C9J2P7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L10C9JJH3 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L13C9JLJ4 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L12C9JPN9 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L11C9JVI0 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L21D6R901 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L18D6R9N7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L22D6RA61 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L17D6RBQ6 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L19D6RCP7 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L20D6RJB6 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 ATP1A2P50993 1020 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 USP17L24Q0WX57 530 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 LCE2AQ5TA79 106 aaPredicted RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 DZIP3Q86Y13 1208 aaKnown RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 PLPP7Q8NBV4 271 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 ADAM32Q8TC27 787 aa8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 CCER1Q8TC90 406 aaPredicted RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 GNEQ9Y223 722 aaKnown RBP8.09□□□□□ -1.11
HMGB3P18-201ENST00000406327 RASA1P20936 1047 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 NCOA4Q13772 614 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 RNF20Q5VTR2 975 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 SND1Q7KZF4 910 aaKnown RBP eCLIP8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC125Q86Z20 511 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC24Q8N4L8 307 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM174AQ8TBP5 190 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 EMID1Q96A84 441 aaPredicted RBP8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 SLC6A16Q9GZN6 736 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 PRDM9Q9NQV7 894 aa8.08□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM187AA6NFU0 413 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 CCDC27Q2M243 656 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 TMEM164Q5U3C3 297 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 SH3BP5LQ7L8J4 393 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 BPHLQ86WA6 291 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 RGS22Q8NE09 1264 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 FAM200AQ8TCP9 573 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 CDCA7Q9BWT1 371 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 ZMIZ1Q9ULJ6 1067 aa8.07□□□□□ -1.12
HMGB3P18-201ENST00000406327 DEPDC4Q8N2C3 294 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 PHTF2Q8N3S3 785 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 STK32AQ8WU08 396 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 CHIC2Q9UKJ5 165 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 CDV3Q9UKY7 258 aaKnown RBP8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 NOD1Q9Y239 953 aa8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 RBM19Q9Y4C8 960 aaKnown RBP8.06□□□□□ -1.12
HMGB3P18-201ENST00000406327 TLL1O43897 1013 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 PTK7Q13308 1070 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 SWI5Q1ZZU3 235 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 NBPF20Q3BBV1 942 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 ZNF697Q5TEC3 545 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 ANKLE1Q8NAG6 615 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 SIRT1Q96EB6 747 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 OCSTAMPQ9BR26 566 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 DOLKQ9UPQ8 538 aa8.05□□□□□ -1.12
HMGB3P18-201ENST00000406327 CARNS1A5YM72 827 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 AGERQ15109 404 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 CRTC2Q53ET0 693 aaPredicted RBP8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 ANKMY2Q8IV38 441 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 CLP1Q92989 425 aaKnown RBP8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 TRIM52Q96A61 297 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 SLC10A4Q96EP9 437 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 MTMR7Q9Y216 660 aa8.04□□□□□ -1.12
HMGB3P18-201ENST00000406327 MAGEB6P1A0A0J9YX57 407 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 GDF9O60383 454 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 ARID4AP29374 1257 aaPredicted RBP8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 LARGE2Q8N3Y3 721 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 CARD14Q9BXL6 1004 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 AAASQ9NRG9 546 aa8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 DNAAF2Q9NVR5 837 aaKnown RBP8.03□□□□□ -1.12
HMGB3P18-201ENST00000406327 TNFRSF10AO00220 468 aa8.02□□□□□ -1.13
HMGB3P18-201ENST00000406327 ST8SIA5O15466 376 aa8.02□□□□□ -1.13
HMGB3P18-201ENST00000406327 LIAT1Q6ZQX7 453 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms