RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 SKOR1P84550 965 aa7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 CRTC2Q53ET0 693 aaPredicted RBP7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 BPHLQ86WA6 291 aaPredicted RBP7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 NFATC2IPQ8NCF5 419 aa7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 MKRN1Q9UHC7 482 aaKnown RBP7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 ZMIZ1Q9ULJ6 1067 aa7.06□□□□□ -1.28
HMGB1P17-201ENST00000403495 TMEM88BA6NKF7 163 aa7.05□□□□□ -1.28
HMGB1P17-201ENST00000403495 OXLD1Q5BKU9 147 aa7.05□□□□□ -1.28
HMGB1P17-201ENST00000403495 CDCA7Q9BWT1 371 aaPredicted RBP7.05□□□□□ -1.28
HMGB1P17-201ENST00000403495 ITGBL1O95965 494 aaPredicted RBP7.04□□□□□ -1.28
HMGB1P17-201ENST00000403495 TMEM164Q5U3C3 297 aa7.04□□□□□ -1.28
HMGB1P17-201ENST00000403495 PPP1R18Q6NYC8 613 aa7.04□□□□□ -1.28
HMGB1P17-201ENST00000403495 PLEKHM2Q8IWE5 1019 aa7.04□□□□□ -1.28
HMGB1P17-201ENST00000403495 SLC10A4Q96EP9 437 aa7.04□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L15C9J2P7 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L10C9JJH3 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L13C9JLJ4 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L12C9JPN9 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L11C9JVI0 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L21D6R901 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L18D6R9N7 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L22D6RA61 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L17D6RBQ6 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L19D6RCP7 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L20D6RJB6 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 ZBTB24O43167 697 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 RASA1P20936 1047 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 USP17L24Q0WX57 530 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 TRIM32Q13049 653 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 TRAF7Q6Q0C0 670 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 ZNF594Q96JF6 807 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 NOVA2Q9UNW9 492 aaKnown RBP7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 DOLKQ9UPQ8 538 aa7.03□□□□□ -1.28
HMGB1P17-201ENST00000403495 KCTD17Q8N5Z5 321 aa7.02□□□□□ -1.29
HMGB1P17-201ENST00000403495 C1QTNF2Q9BXJ5 285 aa7.02□□□□□ -1.29
HMGB1P17-201ENST00000403495 USTQ9Y2C2 406 aa7.02□□□□□ -1.29
HMGB1P17-201ENST00000403495 LGR5O75473 907 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 MCCD1P59942 119 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 CLDN10P78369 228 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 ARID5BQ14865 1188 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 EML3Q32P44 896 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 ANKLE1Q8NAG6 615 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 EMID1Q96A84 441 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 SLAIN2Q9P270 581 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 CHIC2Q9UKJ5 165 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 KIAA1024Q9UPX6 916 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 PCDHB11Q9Y5F2 797 aa7.01□□□□□ -1.29
HMGB1P17-201ENST00000403495 PTK7Q13308 1070 aa7□□□□□ -1.29
HMGB1P17-201ENST00000403495 LARP1Q6PKG0 1096 aaKnown RBP7□□□□□ -1.29
HMGB1P17-201ENST00000403495 LIAT1Q6ZQX7 453 aa7□□□□□ -1.29
HMGB1P17-201ENST00000403495 OGFOD1Q8N543 542 aa7□□□□□ -1.29
HMGB1P17-201ENST00000403495 GZF1Q9H116 711 aaPredicted RBP7□□□□□ -1.29
HMGB1P17-201ENST00000403495 EIF4ENIF1Q9NRA8 985 aaKnown RBP7□□□□□ -1.29
HMGB1P17-201ENST00000403495 FAM196BA6NMK8 535 aa6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 GGCXP38435 758 aa6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 DPYDQ12882 1025 aa6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 ZNF592Q92610 1267 aa6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 KCTD15Q96SI1 283 aaPredicted RBP6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 TLL2Q9Y6L7 1015 aa6.99□□□□□ -1.29
HMGB1P17-201ENST00000403495 ESPNB1AK53 854 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 ATP5J2-PTCD1G3V325 749 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 SCNN1AP37088 669 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 GTF2IP78347 998 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 MAP7D1Q3KQU3 841 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 VASH1Q7L8A9 365 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 EHBP1Q8NDI1 1231 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 NOD1Q9Y239 953 aa6.98□□□□□ -1.29
HMGB1P17-201ENST00000403495 STAU1O95793 577 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 SCTRP47872 440 aa6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 ELOAQ14241 798 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 NBPF20Q3BBV1 942 aa6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 INTS6LQ5JSJ4 861 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 RC3H1Q5TC82 1133 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 ANKMY2Q8IV38 441 aa6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 TRMT44Q8IYL2 757 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 DNAAF2Q9NVR5 837 aaKnown RBP6.97□□□□□ -1.29
HMGB1P17-201ENST00000403495 SFI1A8K8P3 1242 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 ERVH48-1M5A8F1 160 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 ZBTB7BO15156 539 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 BRD1O95696 1058 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 PSME1Q06323 249 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 PDE4CQ08493 712 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 FAM69CQ0P6D2 419 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 FAM200AQ8TCP9 573 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 TMPRSS4Q9NRS4 437 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 IVNS1ABPQ9Y6Y0 642 aa6.96□□□□□ -1.3
HMGB1P17-201ENST00000403495 DKK1O94907 266 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 FSHRP23945 695 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 VARSP26640 1264 aaKnown RBP6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 WNT7BP56706 349 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 RNF20Q5VTR2 975 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 TPCN2Q8NHX9 752 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 GAS2L2Q8NHY3 880 aa6.95□□□□□ -1.3
HMGB1P17-201ENST00000403495 LZTS3O60299 673 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 RPIAP49247 311 aa6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 CCDC102BQ68D86 513 aa6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 PHLDB3Q6NSJ2 640 aa6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 TRIM50Q86XT4 487 aa6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 CYLDQ9NQC7 956 aa6.94□□□□□ -1.3
HMGB1P17-201ENST00000403495 PCDHGA11Q9Y5H2 935 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 427.6 ms