RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 RALBP1Q15311 655 aa21.62■■□□□ 1.05
HMGA1-204ENST00000401473 USP21Q9UK80 565 aa21.62■■□□□ 1.05
HMGA1-204ENST00000401473 HOXC9P31274 260 aa21.61■■□□□ 1.05
HMGA1-204ENST00000401473 AMPHP49418 695 aa21.61■■□□□ 1.05
HMGA1-204ENST00000401473 DIEXFQ68CQ4 756 aaKnown RBP21.61■■□□□ 1.05
HMGA1-204ENST00000401473 IP6K1Q92551 441 aa21.61■■□□□ 1.05
HMGA1-204ENST00000401473 RGPD5Q99666 1765 aa21.61■■□□□ 1.05
HMGA1-204ENST00000401473 CAMTA1Q9Y6Y1 1673 aa21.61■■□□□ 1.05
HMGA1-204ENST00000401473 HSP90AB2PQ58FF8 381 aa21.6■■□□□ 1.05
HMGA1-204ENST00000401473 PEAK1Q9H792 1746 aa21.6■■□□□ 1.05
HMGA1-204ENST00000401473 COL14A1Q05707 1796 aaKnown RBP21.59■■□□□ 1.05
HMGA1-204ENST00000401473 POTEAQ6S8J7 498 aa21.59■■□□□ 1.05
HMGA1-204ENST00000401473 UNC5CLQ8IV45 518 aa21.59■■□□□ 1.05
HMGA1-204ENST00000401473 PLCH1Q4KWH8 1693 aa21.58■■□□□ 1.05
HMGA1-204ENST00000401473 LMO7Q8WWI1 1683 aa21.58■■□□□ 1.05
HMGA1-204ENST00000401473 ANP32CO43423 234 aa21.57■■□□□ 1.04
HMGA1-204ENST00000401473 ZNF772Q68DY9 489 aaPredicted RBP21.57■■□□□ 1.04
HMGA1-204ENST00000401473 SMG6Q86US8 1419 aaKnown RBP21.56■■□□□ 1.04
HMGA1-204ENST00000401473 QTRT2Q9H974 415 aaKnown RBP21.56■■□□□ 1.04
HMGA1-204ENST00000401473 FLT4P35916 1363 aa21.55■■□□□ 1.04
HMGA1-204ENST00000401473 KIF24Q5T7B8 1368 aa21.55■■□□□ 1.04
HMGA1-204ENST00000401473 STRN4Q9NRL3 753 aa21.54■■□□□ 1.04
HMGA1-204ENST00000401473 NWD2Q9ULI1 1742 aa21.54■■□□□ 1.04
HMGA1-204ENST00000401473 MYBBP1AQ9BQG0 1328 aaKnown RBP21.53■■□□□ 1.04
HMGA1-204ENST00000401473 RTL1A6NKG5 1358 aa21.53■■□□□ 1.04
HMGA1-204ENST00000401473 LTV1Q96GA3 475 aaPredicted RBP21.53■■□□□ 1.04
HMGA1-204ENST00000401473 INSRP06213 1382 aa21.53■■□□□ 1.04
HMGA1-204ENST00000401473 COL5A2P05997 1499 aaPredicted RBP21.53■■□□□ 1.04
HMGA1-204ENST00000401473 LARP1Q6PKG0 1096 aaKnown RBP21.52■■□□□ 1.04
HMGA1-204ENST00000401473 NRAPQ86VF7 1730 aa21.52■■□□□ 1.04
HMGA1-204ENST00000401473 ERBB3P21860 1342 aa21.52■■□□□ 1.04
HMGA1-204ENST00000401473 ATRNO75882 1429 aa21.52■■□□□ 1.04
HMGA1-204ENST00000401473 EVA1CP58658 441 aa21.52■■□□□ 1.03
HMGA1-204ENST00000401473 ANKRD24Q8TF21 1146 aa21.52■■□□□ 1.03
HMGA1-204ENST00000401473 TRPC5Q9UL62 973 aaPredicted RBP21.52■■□□□ 1.03
HMGA1-204ENST00000401473 BLMP54132 1417 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-204ENST00000401473 VPS72Q15906 364 aa21.51■■□□□ 1.03
HMGA1-204ENST00000401473 ABCC6O95255 1503 aa21.5■■□□□ 1.03
HMGA1-204ENST00000401473 CDK12Q9NYV4 1490 aaPredicted RBP21.5■■□□□ 1.03
HMGA1-204ENST00000401473 EIF4A2Q14240 407 aaKnown RBP21.49■■□□□ 1.03
HMGA1-204ENST00000401473 CCDC184Q52MB2 194 aa21.49■■□□□ 1.03
HMGA1-204ENST00000401473 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.49■■□□□ 1.03
HMGA1-204ENST00000401473 GJD4Q96KN9 370 aaPredicted RBP21.49■■□□□ 1.03
HMGA1-204ENST00000401473 WDR17Q8IZU2 1322 aa21.48■■□□□ 1.03
HMGA1-204ENST00000401473 SPATA31A5Q5VU36 1347 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 SPATA31A7Q8IWB4 1347 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 IL13P35225 146 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 NBPF6Q5VWK0 638 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 NBPF4Q96M43 638 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 CCDC9Q9Y3X0 531 aaKnown RBP21.47■■□□□ 1.03
HMGA1-204ENST00000401473 RGPD2P0DJD1 1756 aa21.47■■□□□ 1.03
HMGA1-204ENST00000401473 CSB-PGBD3P0DP91 1061 aa21.46■■□□□ 1.03
HMGA1-204ENST00000401473 COL3A1P02461 1466 aaPredicted RBP21.45■■□□□ 1.03
HMGA1-204ENST00000401473 USP35Q9P2H5 1018 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 SPATA31A1Q5TZJ5 1347 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 RXRBP28702 533 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 RBM6P78332 1123 aaKnown RBP21.45■■□□□ 1.02
HMGA1-204ENST00000401473 TOM1L2Q6ZVM7 507 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 MIER1Q8N108 512 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 EYA1Q99502 592 aa21.45■■□□□ 1.02
HMGA1-204ENST00000401473 DIAPH1O60610 1272 aaKnown RBP21.44■■□□□ 1.02
HMGA1-204ENST00000401473 NLRP2Q9NX02 1062 aa21.44■■□□□ 1.02
HMGA1-204ENST00000401473 GLI3P10071 1580 aa21.44■■□□□ 1.02
HMGA1-204ENST00000401473 CRB1P82279 1406 aa21.43■■□□□ 1.02
HMGA1-204ENST00000401473 CFAP53Q96M91 514 aa21.43■■□□□ 1.02
HMGA1-204ENST00000401473 EP400Q96L91 3159 aa21.43■■□□□ 1.02
HMGA1-204ENST00000401473 USHBP1Q8N6Y0 703 aa21.42■■□□□ 1.02
HMGA1-204ENST00000401473 CARD10Q9BWT7 1032 aa21.42■■□□□ 1.02
HMGA1-204ENST00000401473 FAM98CQ17RN3 349 aaKnown RBP21.4■■□□□ 1.02
HMGA1-204ENST00000401473 ONECUT3O60422 494 aaPredicted RBP21.39■■□□□ 1.01
HMGA1-204ENST00000401473 ILDR2Q71H61 639 aa21.39■■□□□ 1.01
HMGA1-204ENST00000401473 TCP11L2Q8N4U5 519 aa21.39■■□□□ 1.01
HMGA1-204ENST00000401473 IGSF1Q8N6C5 1336 aa21.38■■□□□ 1.01
HMGA1-204ENST00000401473 U2SURPO15042 1029 aaKnown RBP21.37■■□□□ 1.01
HMGA1-204ENST00000401473 AEBP1Q8IUX7 1158 aa21.37■■□□□ 1.01
HMGA1-204ENST00000401473 RGPD1P0DJD0 1748 aa21.36■■□□□ 1.01
HMGA1-204ENST00000401473 BARGINQ6ZT62 677 aa21.36■■□□□ 1.01
HMGA1-204ENST00000401473 FAM208AQ9UK61 1670 aaKnown RBP21.36■■□□□ 1.01
HMGA1-204ENST00000401473 HMOX1P09601 288 aa21.35■■□□□ 1.01
HMGA1-204ENST00000401473 SULT6B1Q6IMI4 303 aa21.35■■□□□ 1.01
HMGA1-204ENST00000401473 MRS2Q9HD23 443 aa21.35■■□□□ 1.01
HMGA1-204ENST00000401473 RGS12O14924 1447 aa21.35■■□□□ 1.01
HMGA1-204ENST00000401473 THRAP3Q9Y2W1 955 aaKnown RBP21.35■■□□□ 1.01
HMGA1-204ENST00000401473 NUDCQ9Y266 331 aa21.34■■□□□ 1.01
HMGA1-204ENST00000401473 NCAPD2Q15021 1401 aa21.34■■□□□ 1.01
HMGA1-204ENST00000401473 U2AF1L5P0DN76 240 aaPredicted RBP21.33■■□□□ 1.01
HMGA1-204ENST00000401473 U2AF1Q01081 240 aaKnown RBP eCLIP21.33■■□□□ 1.01
HMGA1-204ENST00000401473 SEPT12Q8IYM1 358 aa21.33■■□□□ 1.01
HMGA1-204ENST00000401473 PNISRQ8TF01 805 aaKnown RBP21.32■■□□□ 1
HMGA1-204ENST00000401473 KDRP35968 1356 aa21.31■■□□□ 1
HMGA1-204ENST00000401473 ADAMTS8Q9UP79 889 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 DISP2A7MBM2 1401 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 A0A0G2JS52 829 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 CCER2I3L3R5 266 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 IL2RBP14784 551 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 MYT1Q01538 1121 aa21.3■■□□□ 1
HMGA1-204ENST00000401473 THSD7AQ9UPZ6 1657 aa21.29■■□□□ 1
HMGA1-204ENST00000401473 MEGF6O75095 1541 aa21.28■■□□□ 1
HMGA1-204ENST00000401473 RAPGEF4Q8WZA2 1011 aa21.28■■□□□ 1
HMGA1-204ENST00000401473 RSPH6AQ9H0K4 717 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms