RNA–Protein interactions for RNA: ENST00000400060.8

PTPRM-203, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5 BASIC

Gene PTPRM, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-203ENST00000400060 KIAA1328Q86T90 577 aa11.81□□□□□ -0.52
PTPRM-203ENST00000400060 ZNF644Q9H582 1327 aaPredicted RBP11.81□□□□□ -0.52
PTPRM-203ENST00000400060 BCL2L12Q9HB09 334 aa11.81□□□□□ -0.52
PTPRM-203ENST00000400060 TOPBP1Q92547 1522 aa11.81□□□□□ -0.52
PTPRM-203ENST00000400060 ZKSCAN1P17029 563 aaPredicted RBP11.81□□□□□ -0.52
PTPRM-203ENST00000400060 KRT85P78386 507 aa11.81□□□□□ -0.52
PTPRM-203ENST00000400060 SF3A1Q15459 793 aaKnown RBP11.81□□□□□ -0.52
PTPRM-203ENST00000400060 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.81□□□□□ -0.52
PTPRM-203ENST00000400060 GOLGA6L7A0A1B0GV03 622 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 PRIM1P49642 420 aaKnown RBP11.8□□□□□ -0.52
PTPRM-203ENST00000400060 HDAC1Q13547 482 aaPredicted RBP11.8□□□□□ -0.52
PTPRM-203ENST00000400060 NCBP3Q53F19 620 aaKnown RBP11.8□□□□□ -0.52
PTPRM-203ENST00000400060 HSP90AB3PQ58FF7 597 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 PAIP2Q9BPZ3 127 aaKnown RBP11.8□□□□□ -0.52
PTPRM-203ENST00000400060 PRDM4Q9UKN5 801 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 NEK4P51957 841 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 YY1AP1Q9H869 796 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 BICRAQ9NZM4 1560 aa11.8□□□□□ -0.52
PTPRM-203ENST00000400060 LRRFIP2Q9Y608 721 aaKnown RBP11.8□□□□□ -0.52
PTPRM-203ENST00000400060 U2AF2P26368 475 aaKnown RBP eCLIP11.79□□□□□ -0.525e-6■□□□□ 9.7
PTPRM-203ENST00000400060 MNAT1P51948 309 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 RIPK4P57078 832 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 ZSCAN31Q96LW9 406 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-203ENST00000400060 ANKRD30BQ9BXX2 1392 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 C16orf45Q96MC5 204 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-203ENST00000400060 BCL2L13Q9BXK5 485 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 POLR3GO15318 223 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-203ENST00000400060 CCDC150Q8NCX0 1101 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 PARD3Q8TEW0 1356 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 SAFB2Q14151 953 aaKnown RBP eCLIP11.79□□□□□ -0.52
PTPRM-203ENST00000400060 IQCEQ6IPM2 695 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 TRERF1Q96PN7 1200 aa11.79□□□□□ -0.52
PTPRM-203ENST00000400060 CTAGE5O15320 804 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 TUBBP07437 444 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 UBE2HP62256 183 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 ANTXR1Q9H6X2 564 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 TERF2IPQ9NYB0 399 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 LMAN1P49257 510 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 CLIP2Q9UDT6 1046 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 MKRN1Q9UHC7 482 aaKnown RBP11.78□□□□□ -0.52
PTPRM-203ENST00000400060 RIOK3O14730 519 aaKnown RBP11.78□□□□□ -0.52
PTPRM-203ENST00000400060 ERC1Q8IUD2 1116 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 RTF1Q92541 710 aaKnown RBP11.78□□□□□ -0.52
PTPRM-203ENST00000400060 RBSNQ9H1K0 784 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 ERBINQ96RT1 1412 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 GORABQ5T7V8 394 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 WWC1Q8IX03 1113 aa11.78□□□□□ -0.52
PTPRM-203ENST00000400060 SARNPP82979 210 aaKnown RBP11.77□□□□□ -0.52
PTPRM-203ENST00000400060 CEP57L1Q8IYX8 460 aa11.77□□□□□ -0.52
PTPRM-203ENST00000400060 DDX19AQ9NUU7 478 aaKnown RBP11.77□□□□□ -0.52
PTPRM-203ENST00000400060 STK26Q9P289 416 aa11.77□□□□□ -0.52
PTPRM-203ENST00000400060 MYO6Q9UM54 1294 aa11.77□□□□□ -0.52
PTPRM-203ENST00000400060 VPS37CA5D8V6 355 aaPredicted RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 KIF1CO43896 1103 aaKnown RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 ANO2Q9NQ90 1003 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 INCENPQ9NQS7 918 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 RSPH14Q9UHP6 348 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 KINO60870 393 aaKnown RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 IGHDP01880 384 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 MX1P20591 662 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 ATF7IPQ6VMQ6 1270 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 DNMBPQ6XZF7 1577 aa11.77□□□□□ -0.53
PTPRM-203ENST00000400060 IPO7O95373 1038 aaKnown RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 ZRSR2Q15696 482 aaKnown RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 FOXD4L6Q3SYB3 417 aaPredicted RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 FOXD4L3Q6VB84 417 aaPredicted RBP11.77□□□□□ -0.53
PTPRM-203ENST00000400060 BLMP54132 1417 aaPredicted RBP11.76□□□□□ -0.53
PTPRM-203ENST00000400060 CFAP43Q8NDM7 1665 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 PSMA5P28066 241 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 SNW1Q13573 536 aaKnown RBP11.76□□□□□ -0.53
PTPRM-203ENST00000400060 ATP8B1O43520 1251 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 KDM4AO75164 1064 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 OLFM4Q6UX06 510 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 KRBA2Q6ZNG9 492 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 RALGAPBQ86X10 1494 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 ATP6V1AP38606 617 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 SKAP1Q86WV1 359 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 C10orf67Q8IYJ2 551 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 HECW1Q76N89 1606 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 FIBPO43427 364 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 CCDC102AQ96A19 550 aa11.76□□□□□ -0.53
PTPRM-203ENST00000400060 LUZP1Q86V48 1076 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 ARFGAP3Q9NP61 516 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 PCF11O94913 1555 aaKnown RBP11.75□□□□□ -0.53
PTPRM-203ENST00000400060 POTEDQ86YR6 584 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 ZNF396Q96N95 335 aaPredicted RBP11.75□□□□□ -0.53
PTPRM-203ENST00000400060 LRRCC1Q9C099 1032 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 ABCA10Q8WWZ4 1543 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 APBB1O00213 710 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 FMNL3Q8IVF7 1028 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 SMARCE1Q969G3 411 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 NPHP1O15259 732 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 GTF2E1P29083 439 aaPredicted RBP11.75□□□□□ -0.53
PTPRM-203ENST00000400060 CASQ1P31415 396 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 FAM200AQ8TCP9 573 aa11.75□□□□□ -0.53
PTPRM-203ENST00000400060 ANKRD36BQ8N2N9 1353 aa11.74□□□□□ -0.53
PTPRM-203ENST00000400060 SFPQP23246 707 aaKnown RBP eCLIP11.74□□□□□ -0.53
PTPRM-203ENST00000400060 GBP6Q6ZN66 633 aa11.74□□□□□ -0.53
PTPRM-203ENST00000400060 MAP2K2P36507 400 aa11.74□□□□□ -0.53
PTPRM-203ENST00000400060 RARSP54136 660 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms