RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 ODF2Q5BJF6 829 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 SEPT14Q6ZU15 432 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 ZFP91Q96JP5 570 aaPredicted RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 NAT10Q9H0A0 1025 aaKnown RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 TRAK1Q9UPV9 953 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 SMC3Q9UQE7 1217 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 A0A1B0GUL7 405 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 GNAI1P63096 354 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 DHX8Q14562 1220 aaKnown RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 GBP3Q9H0R5 595 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 LRPPRCP42704 1394 aaKnown RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 HDGFP51858 240 aaKnown RBP11.34□□□□□ -0.59
SMAD9-203ENST00000399275 PDILTQ8N807 584 aa11.34□□□□□ -0.59
SMAD9-203ENST00000399275 FAM184AQ8NB25 1140 aa11.34□□□□□ -0.59
SMAD9-203ENST00000399275 BMS1Q14692 1282 aaKnown RBP11.34□□□□□ -0.59
SMAD9-203ENST00000399275 HOOK1Q9UJC3 728 aaKnown RBP11.34□□□□□ -0.59
SMAD9-203ENST00000399275 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.34□□□□□ -0.59
SMAD9-203ENST00000399275 CC2D2AQ9P2K1 1620 aa11.34□□□□□ -0.59
SMAD9-203ENST00000399275 C20orf194Q5TEA3 1177 aa11.34□□□□□ -0.59
SMAD9-203ENST00000399275 FILIP1Q7Z7B0 1213 aa11.34□□□□□ -0.59
SMAD9-203ENST00000399275 KIF3BO15066 747 aa11.33□□□□□ -0.6
SMAD9-203ENST00000399275 DRC1Q96MC2 740 aa11.33□□□□□ -0.6
SMAD9-203ENST00000399275 ANO2Q9NQ90 1003 aa11.33□□□□□ -0.6
SMAD9-203ENST00000399275 ZKSCAN1P17029 563 aaPredicted RBP11.33□□□□□ -0.6
SMAD9-203ENST00000399275 MICALL1Q8N3F8 863 aa11.33□□□□□ -0.6
SMAD9-203ENST00000399275 CRACR2AQ9BSW2 395 aa11.33□□□□□ -0.6
SMAD9-203ENST00000399275 ZNHIT6Q9NWK9 470 aaKnown RBP11.33□□□□□ -0.6
SMAD9-203ENST00000399275 NAA25Q14CX7 972 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 CFAP45Q9UL16 551 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 PRIMPOLQ96LW4 560 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 KIF2AO00139 706 aaPredicted RBP11.32□□□□□ -0.6
SMAD9-203ENST00000399275 TBC1D32Q96NH3 1257 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 GOLGA6L9A6NEM1 432 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 FAM184BQ9ULE4 1060 aa11.32□□□□□ -0.6
SMAD9-203ENST00000399275 XRCC6P12956 609 aaKnown RBP eCLIP11.31□□□□□ -0.6
SMAD9-203ENST00000399275 DAAM2Q86T65 1068 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 TAX1BP1Q86VP1 789 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 CHD1LQ86WJ1 897 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 POLA1P09884 1462 aaPredicted RBP11.31□□□□□ -0.6
SMAD9-203ENST00000399275 PRDM2Q13029 1718 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 ELL2O00472 640 aaPredicted RBP11.31□□□□□ -0.6
SMAD9-203ENST00000399275 ERLIN2O94905 339 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 CEP57Q86XR8 500 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.31□□□□□ -0.6
SMAD9-203ENST00000399275 TOPBP1Q92547 1522 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 MAP2K2P36507 400 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 FMNL3Q8IVF7 1028 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 RSRC1Q96IZ7 334 aaKnown RBP11.31□□□□□ -0.6
SMAD9-203ENST00000399275 CEP83Q9Y592 693 aa11.31□□□□□ -0.6
SMAD9-203ENST00000399275 ATF7IPQ6VMQ6 1270 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 GIGYF2Q6Y7W6 1299 aaKnown RBP11.3□□□□□ -0.6
SMAD9-203ENST00000399275 RPAINQ86UA6 219 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 RSPH14Q9UHP6 348 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 DHX29Q7Z478 1369 aaKnown RBP11.3□□□□□ -0.6
SMAD9-203ENST00000399275 C8orf34Q49A92 452 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 FBXW7Q969H0 707 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 IGSF3O75054 1194 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 DUSP27Q5VZP5 1158 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 CCDC73Q6ZRK6 1079 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 NEBLO76041 1014 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 MAP2K1Q02750 393 aaPredicted RBP11.3□□□□□ -0.6
SMAD9-203ENST00000399275 EXOSC9Q06265 439 aaKnown RBP11.3□□□□□ -0.6
SMAD9-203ENST00000399275 SKAP1Q86WV1 359 aa11.3□□□□□ -0.6
SMAD9-203ENST00000399275 TNPO1Q92973 898 aaKnown RBP11.3□□□□□ -0.6
SMAD9-203ENST00000399275 WDR33Q9C0J8 1336 aaKnown RBP11.29□□□□□ -0.6
SMAD9-203ENST00000399275 GGT6Q6P531 493 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 RNF123Q5XPI4 1314 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 NOB1Q9ULX3 412 aaKnown RBP11.29□□□□□ -0.6
SMAD9-203ENST00000399275 SMC2O95347 1197 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 MIPOL1Q8TD10 442 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 SMARCC1Q92922 1105 aaPredicted RBP11.29□□□□□ -0.6
SMAD9-203ENST00000399275 JPH4Q96JJ6 628 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 NEK4P51957 841 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 CEP63Q96MT8 703 aa11.29□□□□□ -0.6
SMAD9-203ENST00000399275 VPS37CA5D8V6 355 aaPredicted RBP11.28□□□□□ -0.6
SMAD9-203ENST00000399275 CCDC192P0DO97 292 aa11.28□□□□□ -0.6
SMAD9-203ENST00000399275 ATP6V1AP38606 617 aa11.28□□□□□ -0.6
SMAD9-203ENST00000399275 MTHFSP49914 203 aa11.28□□□□□ -0.6
SMAD9-203ENST00000399275 C9orf84Q5VXU9 1444 aa11.28□□□□□ -0.6
SMAD9-203ENST00000399275 HSPA4P34932 840 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 ZNF428Q96B54 188 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 DNMBPQ6XZF7 1577 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 ERC2O15083 957 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 PTPN14Q15678 1187 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 KIF18AQ8NI77 898 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 TMX1Q9H3N1 280 aa11.27□□□□□ -0.6
SMAD9-203ENST00000399275 DBN1Q16643 649 aa11.27□□□□□ -0.61
SMAD9-203ENST00000399275 CFAP57Q96MR6 1250 aa11.27□□□□□ -0.61
SMAD9-203ENST00000399275 ZMAT2Q96NC0 199 aaKnown RBP11.27□□□□□ -0.61
SMAD9-203ENST00000399275 PIK3R5Q8WYR1 880 aa11.27□□□□□ -0.61
SMAD9-203ENST00000399275 KIF3CO14782 793 aa11.27□□□□□ -0.61
SMAD9-203ENST00000399275 ANKRD18AQ8IVF6 992 aa11.27□□□□□ -0.61
SMAD9-203ENST00000399275 KLHL40Q2TBA0 621 aa11.26□□□□□ -0.61
SMAD9-203ENST00000399275 SEPT7Q16181 437 aaKnown RBP11.26□□□□□ -0.61
SMAD9-203ENST00000399275 FAM177A1Q8N128 213 aaPredicted RBP11.26□□□□□ -0.61
SMAD9-203ENST00000399275 ANKRD62A6NC57 917 aa11.26□□□□□ -0.61
SMAD9-203ENST00000399275 MAP9Q49MG5 647 aa11.26□□□□□ -0.61
SMAD9-203ENST00000399275 HS1BP3Q53T59 392 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms