RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 POLA1P09884 1462 aaPredicted RBP13.58□□□□□ -0.24
TTC28-201ENST00000397906 AACSQ86V21 672 aa13.58□□□□□ -0.24
TTC28-201ENST00000397906 NACAP1Q9BZK3 213 aa13.57□□□□□ -0.24
TTC28-201ENST00000397906 FMNL2Q96PY5 1086 aa13.57□□□□□ -0.24
TTC28-201ENST00000397906 LRP2BPQ9P2M1 347 aa13.57□□□□□ -0.24
TTC28-201ENST00000397906 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
TTC28-201ENST00000397906 ARHGEF11O15085 1522 aa13.57□□□□□ -0.24
TTC28-201ENST00000397906 BCAR3O75815 825 aa13.57□□□□□ -0.24
TTC28-201ENST00000397906 EPRSP07814 1512 aaKnown RBP13.57□□□□□ -0.24
TTC28-201ENST00000397906 STARD3NLO95772 234 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 ABCF2Q9UG63 623 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 NEK4P51957 841 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 PNISRQ8TF01 805 aaKnown RBP13.56□□□□□ -0.24
TTC28-201ENST00000397906 ARAP1Q96P48 1450 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 LRRCC1Q9C099 1032 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 IGHMBP2P38935 993 aaKnown RBP13.56□□□□□ -0.24
TTC28-201ENST00000397906 TDO2P48775 406 aa13.56□□□□□ -0.24
TTC28-201ENST00000397906 TTLL12Q14166 644 aaPredicted RBP13.56□□□□□ -0.24
TTC28-201ENST00000397906 HIP1O00291 1037 aa13.55□□□□□ -0.24
TTC28-201ENST00000397906 IDH1O75874 414 aaKnown RBP13.55□□□□□ -0.24
TTC28-201ENST00000397906 BRD4O60885 1362 aaPredicted RBP13.55□□□□□ -0.24
TTC28-201ENST00000397906 GNAT3A8MTJ3 354 aa13.55□□□□□ -0.24
TTC28-201ENST00000397906 SRGAP3O43295 1099 aa13.55□□□□□ -0.24
TTC28-201ENST00000397906 FOXO3O43524 673 aa13.55□□□□□ -0.24
TTC28-201ENST00000397906 IFT57Q9NWB7 429 aa13.55□□□□□ -0.24
TTC28-201ENST00000397906 MATR3P43243 847 aaKnown RBP eCLIP13.55□□□□□ -0.248e-7■■■■□ 21.7
TTC28-201ENST00000397906 TXLNAP40222 546 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 CD109Q6YHK3 1445 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 USP5P45974 858 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 SKIDA1Q1XH10 827 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 MCM10Q7L590 875 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 NAT10Q9H0A0 1025 aaKnown RBP13.54□□□□□ -0.24
TTC28-201ENST00000397906 CCT4P50991 539 aaKnown RBP13.54□□□□□ -0.24
TTC28-201ENST00000397906 SYCP1Q15431 976 aa13.54□□□□□ -0.24
TTC28-201ENST00000397906 CHMP5Q9NZZ3 219 aa13.53□□□□□ -0.24
TTC28-201ENST00000397906 TROQ12816 1431 aaPredicted RBP13.53□□□□□ -0.24
TTC28-201ENST00000397906 KIAA1107Q9UPP5 1409 aa13.53□□□□□ -0.24
TTC28-201ENST00000397906 NUCB2P80303 420 aa13.53□□□□□ -0.24
TTC28-201ENST00000397906 CAGE1Q8TC20 777 aa13.52□□□□□ -0.24
TTC28-201ENST00000397906 HFM1A2PYH4 1435 aa13.52□□□□□ -0.24
TTC28-201ENST00000397906 DAPK1P53355 1430 aa13.52□□□□□ -0.24
TTC28-201ENST00000397906 MAGEC2Q9UBF1 373 aaPredicted RBP13.52□□□□□ -0.24
TTC28-201ENST00000397906 GPS2Q13227 327 aa13.52□□□□□ -0.24
TTC28-201ENST00000397906 ZNF76P36508 570 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 GSE1Q14687 1217 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 SOGA3Q5TF21 947 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 SMC2O95347 1197 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 CWC27Q6UX04 472 aaKnown RBP13.52□□□□□ -0.25
TTC28-201ENST00000397906 ZNF652Q9Y2D9 606 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 EFCAB5A4FU69 1503 aa13.52□□□□□ -0.25
TTC28-201ENST00000397906 DCTN1Q14203 1278 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 IL1RAPL2Q9NP60 686 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 METTL24Q5JXM2 366 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 RNF214Q8ND24 703 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 NSD3Q9BZ95 1437 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 THUMPD2Q9BTF0 503 aaKnown RBP13.51□□□□□ -0.25
TTC28-201ENST00000397906 TMOD2Q9NZR1 351 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 RUFY1Q96T51 708 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 KINO60870 393 aaKnown RBP13.51□□□□□ -0.25
TTC28-201ENST00000397906 STK38Q15208 465 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 TRIM22Q8IYM9 498 aa13.51□□□□□ -0.25
TTC28-201ENST00000397906 KCNH5Q8NCM2 988 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 FBXO31Q5XUX0 539 aaPredicted RBP13.5□□□□□ -0.25
TTC28-201ENST00000397906 CYP46A1Q9Y6A2 500 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 SSBP05455 408 aaKnown RBP eCLIP13.5□□□□□ -0.25
TTC28-201ENST00000397906 KIF14Q15058 1648 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 RPGRQ92834 1020 aaKnown RBP13.5□□□□□ -0.25
TTC28-201ENST00000397906 WDR78Q5VTH9 848 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 TANGO6Q9C0B7 1094 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 CEP126Q9P2H0 1117 aa13.5□□□□□ -0.25
TTC28-201ENST00000397906 UBAC1Q9BSL1 405 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 ZSCAN25Q6NSZ9 544 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 FIBPO43427 364 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 CRACR2BQ8N4Y2 399 aaPredicted RBP13.49□□□□□ -0.25
TTC28-201ENST00000397906 ADGRL1O94910 1474 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 PDCL3Q9H2J4 239 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 ATAD2Q6PL18 1390 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 AMOTL2Q9Y2J4 779 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 AIDAQ96BJ3 306 aa13.49□□□□□ -0.25
TTC28-201ENST00000397906 SLC4A8Q2Y0W8 1093 aa13.48□□□□□ -0.25
TTC28-201ENST00000397906 MYD88Q99836 296 aa13.48□□□□□ -0.25
TTC28-201ENST00000397906 SETQ01105 290 aaPredicted RBP13.48□□□□□ -0.25
TTC28-201ENST00000397906 NBPF8Q3BBV2 869 aa13.48□□□□□ -0.25
TTC28-201ENST00000397906 NUTM1Q86Y26 1132 aa13.48□□□□□ -0.25
TTC28-201ENST00000397906 CCDC173Q0VFZ6 552 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 IQGAP2Q13576 1575 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 GRM1Q13255 1194 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 CAVIN4Q5BKX8 364 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 WWC3Q9ULE0 1092 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 GCC1Q96CN9 775 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 ZNF396Q96N95 335 aaPredicted RBP13.47□□□□□ -0.25
TTC28-201ENST00000397906 POLR3DP05423 398 aaPredicted RBP13.47□□□□□ -0.25
TTC28-201ENST00000397906 TOP2BQ02880 1626 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 MINDY4BA8MYZ0 360 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
TTC28-201ENST00000397906 NME9Q86XW9 330 aa13.46□□□□□ -0.25
TTC28-201ENST00000397906 TRIM5Q9C035 493 aa13.46□□□□□ -0.25
TTC28-201ENST00000397906 SCLT1Q96NL6 688 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms