RNA–Protein interactions for RNA: ENST00000394986.5

SNCA-203, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,420 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-203ENST00000394986 KNSTRNQ9Y448 316 aa27.35■■□□□ 1.97
SNCA-203ENST00000394986 EVA1CP58658 441 aa27.34■■□□□ 1.97
SNCA-203ENST00000394986 RGS12O14924 1447 aa27.34■■□□□ 1.97
SNCA-203ENST00000394986 MAP3K19Q56UN5 1328 aa27.34■■□□□ 1.97
SNCA-203ENST00000394986 RRS1Q15050 365 aaKnown RBP27.33■■□□□ 1.97
SNCA-203ENST00000394986 LARP1Q6PKG0 1096 aaKnown RBP27.33■■□□□ 1.97
SNCA-203ENST00000394986 LTN1O94822 1766 aa27.32■■□□□ 1.96
SNCA-203ENST00000394986 PER1O15534 1290 aaPredicted RBP27.32■■□□□ 1.96
SNCA-203ENST00000394986 SPATA31A5Q5VU36 1347 aa27.31■■□□□ 1.96
SNCA-203ENST00000394986 SPATA31A7Q8IWB4 1347 aa27.31■■□□□ 1.96
SNCA-203ENST00000394986 AMER1Q5JTC6 1135 aaPredicted RBP27.3■■□□□ 1.96
SNCA-203ENST00000394986 ABCC6O95255 1503 aa27.3■■□□□ 1.96
SNCA-203ENST00000394986 CDK12Q9NYV4 1490 aaPredicted RBP27.29■■□□□ 1.96
SNCA-203ENST00000394986 TNNT2P45379 298 aaPredicted RBP27.29■■□□□ 1.96
SNCA-203ENST00000394986 USP35Q9P2H5 1018 aa27.29■■□□□ 1.96
SNCA-203ENST00000394986 NSD2O96028 1365 aa27.29■■□□□ 1.96
SNCA-203ENST00000394986 SPATA31A1Q5TZJ5 1347 aa27.28■■□□□ 1.96
SNCA-203ENST00000394986 ANKRD26Q9UPS8 1709 aa27.27■■□□□ 1.96
SNCA-203ENST00000394986 RGPD5Q99666 1765 aa27.26■■□□□ 1.95
SNCA-203ENST00000394986 AMPHP49418 695 aa27.26■■□□□ 1.95
SNCA-203ENST00000394986 FAM98CQ17RN3 349 aaKnown RBP27.26■■□□□ 1.95
SNCA-203ENST00000394986 IP6K1Q92551 441 aa27.26■■□□□ 1.95
SNCA-203ENST00000394986 HOXC9P31274 260 aa27.25■■□□□ 1.95
SNCA-203ENST00000394986 CNGB1Q14028 1251 aaPredicted RBP27.25■■□□□ 1.95
SNCA-203ENST00000394986 EMILIN1Q9Y6C2 1016 aa27.25■■□□□ 1.95
SNCA-203ENST00000394986 WDR17Q8IZU2 1322 aa27.25■■□□□ 1.95
SNCA-203ENST00000394986 CSB-PGBD3P0DP91 1061 aa27.24■■□□□ 1.95
SNCA-203ENST00000394986 MORC1Q86VD1 984 aa27.24■■□□□ 1.95
SNCA-203ENST00000394986 CRB1P82279 1406 aa27.24■■□□□ 1.95
SNCA-203ENST00000394986 CC2D1BQ5T0F9 858 aaKnown RBP27.24■■□□□ 1.95
SNCA-203ENST00000394986 TOM1L2Q6ZVM7 507 aa27.24■■□□□ 1.95
SNCA-203ENST00000394986 ERBB3P21860 1342 aa27.23■■□□□ 1.95
SNCA-203ENST00000394986 BLMP54132 1417 aaPredicted RBP27.23■■□□□ 1.95
SNCA-203ENST00000394986 ANKRD24Q8TF21 1146 aa27.23■■□□□ 1.95
SNCA-203ENST00000394986 PEAK1Q9H792 1746 aa27.23■■□□□ 1.95
SNCA-203ENST00000394986 RTL1A6NKG5 1358 aa27.22■■□□□ 1.95
SNCA-203ENST00000394986 LTV1Q96GA3 475 aaPredicted RBP27.22■■□□□ 1.95
SNCA-203ENST00000394986 A0A0G2JS52 829 aa27.21■■□□□ 1.95
SNCA-203ENST00000394986 MYT1Q01538 1121 aa27.21■■□□□ 1.95
SNCA-203ENST00000394986 SEPT12Q8IYM1 358 aa27.21■■□□□ 1.95
SNCA-203ENST00000394986 PPM1GO15355 546 aaPredicted RBP27.19■■□□□ 1.94
SNCA-203ENST00000394986 POLKQ9UBT6 870 aa27.19■■□□□ 1.94
SNCA-203ENST00000394986 ONECUT3O60422 494 aaPredicted RBP27.18■■□□□ 1.94
SNCA-203ENST00000394986 HSP90AB2PQ58FF8 381 aa27.18■■□□□ 1.94
SNCA-203ENST00000394986 TCP11L2Q8N4U5 519 aa27.18■■□□□ 1.94
SNCA-203ENST00000394986 FLT4P35916 1363 aa27.18■■□□□ 1.94
SNCA-203ENST00000394986 NLRP2Q9NX02 1062 aa27.16■■□□□ 1.94
SNCA-203ENST00000394986 DDX10Q13206 875 aaKnown RBP27.16■■□□□ 1.94
SNCA-203ENST00000394986 THSD7AQ9UPZ6 1657 aa27.15■■□□□ 1.94
SNCA-203ENST00000394986 KIF24Q5T7B8 1368 aa27.15■■□□□ 1.94
SNCA-203ENST00000394986 NPC1L1Q9UHC9 1359 aa27.15■■□□□ 1.94
SNCA-203ENST00000394986 BARGINQ6ZT62 677 aa27.15■■□□□ 1.94
SNCA-203ENST00000394986 CARD10Q9BWT7 1032 aa27.15■■□□□ 1.94
SNCA-203ENST00000394986 INSRP06213 1382 aa27.13■■□□□ 1.93
SNCA-203ENST00000394986 THRAP3Q9Y2W1 955 aaKnown RBP27.13■■□□□ 1.93
SNCA-203ENST00000394986 SMG6Q86US8 1419 aaKnown RBP27.11■■□□□ 1.93
SNCA-203ENST00000394986 SOCS7O14512 581 aa27.1■■□□□ 1.93
SNCA-203ENST00000394986 MAP2P11137 1827 aaKnown RBP27.1■■□□□ 1.93
SNCA-203ENST00000394986 BRWD3Q6RI45 1802 aa27.09■■□□□ 1.93
SNCA-203ENST00000394986 DISP2A7MBM2 1401 aa27.07■■□□□ 1.92
SNCA-203ENST00000394986 NBPF6Q5VWK0 638 aa27.07■■□□□ 1.92
SNCA-203ENST00000394986 KRT27Q7Z3Y8 459 aa27.07■■□□□ 1.92
SNCA-203ENST00000394986 USHBP1Q8N6Y0 703 aa27.07■■□□□ 1.92
SNCA-203ENST00000394986 NBPF4Q96M43 638 aa27.07■■□□□ 1.92
SNCA-203ENST00000394986 ZNF316A6NFI3 1004 aaPredicted RBP27.06■■□□□ 1.92
SNCA-203ENST00000394986 FAM208AQ9UK61 1670 aaKnown RBP27.05■■□□□ 1.92
SNCA-203ENST00000394986 FAM182BQ5T319 152 aa27.05■■□□□ 1.92
SNCA-203ENST00000394986 WNK3Q9BYP7 1800 aa27.04■■□□□ 1.92
SNCA-203ENST00000394986 RGPD2P0DJD1 1756 aa27.03■■□□□ 1.92
SNCA-203ENST00000394986 MTHFSP49914 203 aa27.02■■□□□ 1.92
SNCA-203ENST00000394986 EIF4A2Q14240 407 aaKnown RBP27.02■■□□□ 1.92
SNCA-203ENST00000394986 LRRC37A3O60309 1634 aa27.02■■□□□ 1.92
SNCA-203ENST00000394986 PARP4Q9UKK3 1724 aaKnown RBP27.02■■□□□ 1.92
SNCA-203ENST00000394986 IL2RBP14784 551 aa26.99■■□□□ 1.91
SNCA-203ENST00000394986 DDB1Q16531 1140 aa26.99■■□□□ 1.91
SNCA-203ENST00000394986 CDCA7Q9BWT1 371 aaPredicted RBP26.99■■□□□ 1.91
SNCA-203ENST00000394986 PDE3BQ13370 1112 aa26.99■■□□□ 1.91
SNCA-203ENST00000394986 EYA1Q99502 592 aa26.98■■□□□ 1.91
SNCA-203ENST00000394986 MEGF6O75095 1541 aa26.98■■□□□ 1.91
SNCA-203ENST00000394986 UPF1Q92900 1129 aaKnown RBP eCLIP26.97■■□□□ 1.91
SNCA-203ENST00000394986 TNS2Q63HR2 1409 aa26.95■■□□□ 1.9
SNCA-203ENST00000394986 EP400Q96L91 3159 aa26.94■■□□□ 1.9
SNCA-203ENST00000394986 PPP2R1AP30153 589 aa26.94■■□□□ 1.9
SNCA-203ENST00000394986 PARD3Q8TEW0 1356 aa26.94■■□□□ 1.9
SNCA-203ENST00000394986 NCAPD2Q15021 1401 aa26.93■■□□□ 1.9
SNCA-203ENST00000394986 EXOC5O00471 708 aa26.92■■□□□ 1.9
SNCA-203ENST00000394986 IL13P35225 146 aa26.91■■□□□ 1.9
SNCA-203ENST00000394986 MARCH10Q8NA82 808 aaPredicted RBP26.91■■□□□ 1.9
SNCA-203ENST00000394986 IGSF1Q8N6C5 1336 aa26.91■■□□□ 1.9
SNCA-203ENST00000394986 RAPGEF4Q8WZA2 1011 aa26.9■■□□□ 1.9
SNCA-203ENST00000394986 COL3A1P02461 1466 aaPredicted RBP26.9■■□□□ 1.9
SNCA-203ENST00000394986 OVOS2A0A0G2JMS6 1433 aa26.9■■□□□ 1.9
SNCA-203ENST00000394986 TATP17735 454 aaPredicted RBP26.88■■□□□ 1.89
SNCA-203ENST00000394986 DIAPH1O60610 1272 aaKnown RBP26.86■■□□□ 1.89
SNCA-203ENST00000394986 FAM196AQ6ZSG2 479 aa26.86■■□□□ 1.89
SNCA-203ENST00000394986 AEBP1Q8IUX7 1158 aa26.86■■□□□ 1.89
SNCA-203ENST00000394986 DDX54Q8TDD1 881 aaKnown RBP26.85■■□□□ 1.89
SNCA-203ENST00000394986 ZCRB1Q8TBF4 217 aaKnown RBP26.84■■□□□ 1.89
SNCA-203ENST00000394986 RGPD1P0DJD0 1748 aa26.84■■□□□ 1.89
SNCA-203ENST00000394986 RALBP1Q15311 655 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms