RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 USP8P40818 1118 aa5.46□□□□□ -1.53
SCN1A-202ENST00000375405 SNX16P57768 344 aa5.46□□□□□ -1.53
SCN1A-202ENST00000375405 PIP4K2BP78356 416 aa5.46□□□□□ -1.53
SCN1A-202ENST00000375405 PSPC1Q8WXF1 523 aaKnown RBP5.46□□□□□ -1.53
SCN1A-202ENST00000375405 NFKBIL1Q9UBC1 381 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-202ENST00000375405 RALYLQ86SE5 291 aaKnown RBP5.46□□□□□ -1.53
SCN1A-202ENST00000375405 GTF3C6Q969F1 213 aa5.46□□□□□ -1.53
SCN1A-202ENST00000375405 MORC4Q8TE76 937 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 CFAP36Q96G28 342 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 NASPP49321 788 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-202ENST00000375405 FAM114A1Q8IWE2 563 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 RNF216Q9NWF9 866 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-202ENST00000375405 SCRIBQ14160 1630 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 SLC3A2P08195 630 aaKnown RBP5.46□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC117Q8IWD4 279 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-202ENST00000375405 PPP1R14CQ8TAE6 165 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 EID1Q9Y6B2 187 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 CETN2P41208 172 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 NFKBIBQ15653 356 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 USP5P45974 858 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 WDR63Q8IWG1 891 aa5.46□□□□□ -1.54
SCN1A-202ENST00000375405 LRRC23Q53EV4 343 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 CENPJQ9HC77 1338 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 KIF5AQ12840 1032 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 PROCA1Q8NCQ7 364 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 FAM13BQ9NYF5 915 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 NEUROD6Q96NK8 337 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 LUC7LQ9NQ29 371 aaKnown RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 ERC2O15083 957 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 MAP7D1Q3KQU3 841 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 ZSCAN32Q9NX65 697 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 FBXW4P57775 412 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 JAKMIP3Q5VZ66 844 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 SRCIN1Q9C0H9 1055 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 ATP6V1DQ9Y5K8 247 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 PKD2Q13563 968 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC6Q16204 474 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 FILIP1LQ4L180 1135 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 LARP1Q6PKG0 1096 aaKnown RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 LRRC45Q96CN5 670 aa5.45□□□□□ -1.54
SCN1A-202ENST00000375405 PUF60Q9UHX1 559 aaKnown RBP5.45□□□□□ -1.54
SCN1A-202ENST00000375405 ZRANB2O95218 330 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 U2AF1L5P0DN76 240 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 U2AF1Q01081 240 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 ANKRD45Q5TZF3 282 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 FERMT1Q9BQL6 677 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 MTUS2Q5JR59 1369 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 FAM180AQ6UWF9 173 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 TXLNBQ8N3L3 684 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 PDCD7Q8N8D1 485 aaKnown RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 FMNL2Q96PY5 1086 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 ALS2CR12Q96Q35 445 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 LRRCC1Q9C099 1032 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 MKRN1Q9UHC7 482 aaKnown RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 V9GYY5 206 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 VPS37CA5D8V6 355 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 FAM177A1Q8N128 213 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-202ENST00000375405 TTC30BQ8N4P2 665 aa5.44□□□□□ -1.54
SCN1A-202ENST00000375405 DIAPH1O60610 1272 aaKnown RBP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 PPFIA1Q13136 1202 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 TNIP1Q15025 636 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 TRIM55Q9BYV6 548 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 KIF3CO14782 793 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 ATP6V1E2Q96A05 226 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC66A2RUB6 948 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 NOL3O60936 208 aaKnown RBP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 TEFQ10587 303 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 WAPLQ7Z5K2 1190 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 IFIT2P09913 472 aaKnown RBP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 AEBP1Q8IUX7 1158 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 SPOUT1Q5T280 376 aaKnown RBP5.43□□□□□ -1.54
SCN1A-202ENST00000375405 KANK1Q14678 1352 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 MXRA7P84157 204 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 GEN1Q17RS7 908 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 GGT6Q6P531 493 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 ATP2A3Q93084 1043 aa5.43□□□□□ -1.54
SCN1A-202ENST00000375405 TMF1P82094 1093 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 ATRIPQ8WXE1 791 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 STMN2Q93045 179 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SPATA17Q96L03 361 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SMC6Q96SB8 1091 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 ZNF219Q9P2Y4 722 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SWAP70Q9UH65 585 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 CHMP2AO43633 222 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 GMNNO75496 209 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 ZBTB16Q05516 673 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SREK1Q8WXA9 508 aaKnown RBP5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SPATA32Q96LK8 384 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 ANAPC4Q9UJX5 808 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 CSPG5O95196 566 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 GABPAQ06546 454 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 DPH6Q7L8W6 267 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 ZKSCAN1P17029 563 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC174Q6PII3 467 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 NCAPGQ9BPX3 1015 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 SPECC1L-ADORA2AF8WAN1 911 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 DIXDC1Q155Q3 683 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms