RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 PLSCR1O15162 318 aa20.27■□□□□ 0.84
PTCH1-202ENST00000375271 KCNH5Q8NCM2 988 aa20.27■□□□□ 0.84
PTCH1-202ENST00000375271 WDR17Q8IZU2 1322 aa20.27■□□□□ 0.83
PTCH1-202ENST00000375271 AKAP12Q02952 1782 aa20.26■□□□□ 0.83
PTCH1-202ENST00000375271 ZNF692Q9BU19 519 aaPredicted RBP20.24■□□□□ 0.83
PTCH1-202ENST00000375271 CPSF1Q10570 1443 aaKnown RBP20.24■□□□□ 0.83
PTCH1-202ENST00000375271 PIK3C2AO00443 1686 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 SBF2Q86WG5 1849 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 WNK3Q9BYP7 1800 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 PEAK1Q9H792 1746 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 STK32BQ9NY57 414 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 TRPM1Q7Z4N2 1603 aa20.23■□□□□ 0.83
PTCH1-202ENST00000375271 EXOC5O00471 708 aa20.21■□□□□ 0.83
PTCH1-202ENST00000375271 TTC21AQ8NDW8 1320 aa20.2■□□□□ 0.82
PTCH1-202ENST00000375271 ROCK2O75116 1388 aaKnown RBP20.2■□□□□ 0.82
PTCH1-202ENST00000375271 ZBTB7AO95365 584 aa20.19■□□□□ 0.82
PTCH1-202ENST00000375271 CARD10Q9BWT7 1032 aa20.19■□□□□ 0.82
PTCH1-202ENST00000375271 ANO8Q9HCE9 1232 aaPredicted RBP20.19■□□□□ 0.82
PTCH1-202ENST00000375271 TTC21BQ7Z4L5 1316 aa20.19■□□□□ 0.82
PTCH1-202ENST00000375271 CCDC7Q96M83 1385 aa20.19■□□□□ 0.82
PTCH1-202ENST00000375271 ARHGEF25Q86VW2 580 aa20.18■□□□□ 0.82
PTCH1-202ENST00000375271 MARCH10Q8NA82 808 aaPredicted RBP20.18■□□□□ 0.82
PTCH1-202ENST00000375271 AXIN2Q9Y2T1 843 aa20.18■□□□□ 0.82
PTCH1-202ENST00000375271 COL18A1P39060 1754 aa20.17■□□□□ 0.82
PTCH1-202ENST00000375271 KTN1Q86UP2 1357 aaKnown RBP20.17■□□□□ 0.82
PTCH1-202ENST00000375271 L3MBTL2Q969R5 705 aa20.16■□□□□ 0.82
PTCH1-202ENST00000375271 RGPD5Q99666 1765 aa20.16■□□□□ 0.82
PTCH1-202ENST00000375271 TXNRD1Q16881 649 aa20.15■□□□□ 0.82
PTCH1-202ENST00000375271 BCL9O00512 1426 aa20.15■□□□□ 0.82
PTCH1-202ENST00000375271 CASZ1Q86V15 1759 aa20.15■□□□□ 0.82
PTCH1-202ENST00000375271 ATF5Q9Y2D1 282 aaPredicted RBP20.14■□□□□ 0.81
PTCH1-202ENST00000375271 TNS2Q63HR2 1409 aa20.13■□□□□ 0.81
PTCH1-202ENST00000375271 PTF1AQ7RTS3 328 aa20.13■□□□□ 0.81
PTCH1-202ENST00000375271 ABCC6O95255 1503 aa20.12■□□□□ 0.81
PTCH1-202ENST00000375271 SLC15A2Q16348 729 aa20.12■□□□□ 0.81
PTCH1-202ENST00000375271 NLRP2Q9NX02 1062 aa20.12■□□□□ 0.81
PTCH1-202ENST00000375271 MYOM1P52179 1685 aa20.11■□□□□ 0.81
PTCH1-202ENST00000375271 NEUROD1Q13562 356 aa20.11■□□□□ 0.81
PTCH1-202ENST00000375271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.11■□□□□ 0.81
PTCH1-202ENST00000375271 MTFR1LQ9H019 292 aa20.1■□□□□ 0.81
PTCH1-202ENST00000375271 NFAT5O94916 1531 aa20.09■□□□□ 0.81
PTCH1-202ENST00000375271 HDGFL2Q7Z4V5 671 aaPredicted RBP20.09■□□□□ 0.81
PTCH1-202ENST00000375271 TMC1Q8TDI8 760 aa20.09■□□□□ 0.81
PTCH1-202ENST00000375271 ACSBG1Q96GR2 724 aa20.09■□□□□ 0.81
PTCH1-202ENST00000375271 PROM2Q8N271 834 aa20.08■□□□□ 0.81
PTCH1-202ENST00000375271 PDGFDQ9GZP0 370 aaPredicted RBP20.08■□□□□ 0.81
PTCH1-202ENST00000375271 NHSQ6T4R5 1651 aa20.07■□□□□ 0.8
PTCH1-202ENST00000375271 IL2RBP14784 551 aa20.07■□□□□ 0.8
PTCH1-202ENST00000375271 FHDC1Q9C0D6 1143 aaPredicted RBP20.07■□□□□ 0.8
PTCH1-202ENST00000375271 MON2Q7Z3U7 1717 aa20.06■□□□□ 0.8
PTCH1-202ENST00000375271 KAT6BQ8WYB5 2073 aa20.06■□□□□ 0.8
PTCH1-202ENST00000375271 ERBB3P21860 1342 aa20.05■□□□□ 0.8
PTCH1-202ENST00000375271 PTGER2P43116 358 aa20.04■□□□□ 0.8
PTCH1-202ENST00000375271 SIN3AQ96ST3 1273 aa20.04■□□□□ 0.8
PTCH1-202ENST00000375271 SYT17Q9BSW7 474 aa20.04■□□□□ 0.8
PTCH1-202ENST00000375271 LTN1O94822 1766 aa20.03■□□□□ 0.8
PTCH1-202ENST00000375271 ANKRD24Q8TF21 1146 aa20.03■□□□□ 0.8
PTCH1-202ENST00000375271 ARXQ96QS3 562 aa20.03■□□□□ 0.8
PTCH1-202ENST00000375271 NME9Q86XW9 330 aa20.02■□□□□ 0.8
PTCH1-202ENST00000375271 KLHL34Q8N239 644 aa20.02■□□□□ 0.8
PTCH1-202ENST00000375271 CARD11Q9BXL7 1154 aa20.02■□□□□ 0.8
PTCH1-202ENST00000375271 TERF2IPQ9NYB0 399 aa20.02■□□□□ 0.8
PTCH1-202ENST00000375271 USP31Q70CQ4 1352 aa20.01■□□□□ 0.79
PTCH1-202ENST00000375271 ZNF784Q8NCA9 323 aaPredicted RBP20■□□□□ 0.79
PTCH1-202ENST00000375271 BTAF1O14981 1849 aa19.99■□□□□ 0.79
PTCH1-202ENST00000375271 SBNO2Q9Y2G9 1366 aa19.99■□□□□ 0.79
PTCH1-202ENST00000375271 POLD1P28340 1107 aa19.99■□□□□ 0.79
PTCH1-202ENST00000375271 USP54Q70EL1 1684 aa19.98■□□□□ 0.79
PTCH1-202ENST00000375271 GPR162Q16538 588 aa19.98■□□□□ 0.79
PTCH1-202ENST00000375271 DDX54Q8TDD1 881 aaKnown RBP19.98■□□□□ 0.79
PTCH1-202ENST00000375271 SYTL4Q96C24 671 aaPredicted RBP19.98■□□□□ 0.79
PTCH1-202ENST00000375271 EDC4Q6P2E9 1401 aaKnown RBP19.98■□□□□ 0.79
PTCH1-202ENST00000375271 LTV1Q96GA3 475 aaPredicted RBP19.97■□□□□ 0.79
PTCH1-202ENST00000375271 CHD4Q14839 1912 aa19.97■□□□□ 0.79
PTCH1-202ENST00000375271 PELP1Q8IZL8 1130 aaKnown RBP19.96■□□□□ 0.79
PTCH1-202ENST00000375271 FAM208AQ9UK61 1670 aaKnown RBP19.95■□□□□ 0.78
PTCH1-202ENST00000375271 SLC27A3Q5K4L6 730 aa19.95■□□□□ 0.78
PTCH1-202ENST00000375271 SLC16A10Q8TF71 515 aa19.94■□□□□ 0.78
PTCH1-202ENST00000375271 SLC12A5Q9H2X9 1139 aa19.94■□□□□ 0.78
PTCH1-202ENST00000375271 TFCP2L1Q9NZI6 479 aa19.94■□□□□ 0.78
PTCH1-202ENST00000375271 PAPPAQ13219 1627 aa19.94■□□□□ 0.78
PTCH1-202ENST00000375271 SENP3-EIF4A1A0A087X0R7 540 aa19.93■□□□□ 0.78
PTCH1-202ENST00000375271 ZNF827Q17R98 1081 aa19.93■□□□□ 0.78
PTCH1-202ENST00000375271 SGIP1Q9BQI5 828 aa19.93■□□□□ 0.78
PTCH1-202ENST00000375271 UTRNP46939 3433 aa19.93■□□□□ 0.78
PTCH1-202ENST00000375271 MAP3K5Q99683 1374 aa19.93■□□□□ 0.78
PTCH1-202ENST00000375271 AMPHP49418 695 aa19.92■□□□□ 0.78
PTCH1-202ENST00000375271 COG3Q96JB2 828 aa19.92■□□□□ 0.78
PTCH1-202ENST00000375271 A0A1W2PP64 1363 aa19.92■□□□□ 0.78
PTCH1-202ENST00000375271 TONSLQ96HA7 1378 aa19.92■□□□□ 0.78
PTCH1-202ENST00000375271 CD163L1Q9NR16 1453 aa19.92■□□□□ 0.78
PTCH1-202ENST00000375271 IP6K1Q92551 441 aa19.91■□□□□ 0.78
PTCH1-202ENST00000375271 MSH5O43196 834 aa19.9■□□□□ 0.78
PTCH1-202ENST00000375271 LRRC4BQ9NT99 713 aa19.89■□□□□ 0.77
PTCH1-202ENST00000375271 SLC24A1O60721 1099 aa19.87■□□□□ 0.77
PTCH1-202ENST00000375271 AKT1S1Q96B36 256 aa19.87■□□□□ 0.77
PTCH1-202ENST00000375271 QSER1Q2KHR3 1735 aa19.87■□□□□ 0.77
PTCH1-202ENST00000375271 SMG6Q86US8 1419 aaKnown RBP19.86■□□□□ 0.77
PTCH1-202ENST00000375271 ANKRD36BQ8N2N9 1353 aa19.86■□□□□ 0.77
PTCH1-202ENST00000375271 DOT1LQ8TEK3 1739 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms