RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 RXRBP28702 533 aa20.34■□□□□ 0.85
COL9A1-204ENST00000370496 RBM6P78332 1123 aaKnown RBP20.33■□□□□ 0.84
COL9A1-204ENST00000370496 VPS72Q15906 364 aa20.33■□□□□ 0.84
COL9A1-204ENST00000370496 CDK12Q9NYV4 1490 aaPredicted RBP20.32■□□□□ 0.84
COL9A1-204ENST00000370496 EVA1CP58658 441 aa20.32■□□□□ 0.84
COL9A1-204ENST00000370496 RGS12O14924 1447 aa20.3■□□□□ 0.84
COL9A1-204ENST00000370496 RTL1A6NKG5 1358 aa20.3■□□□□ 0.84
COL9A1-204ENST00000370496 FAM208AQ9UK61 1670 aaKnown RBP20.3■□□□□ 0.84
COL9A1-204ENST00000370496 ILDR2Q71H61 639 aa20.3■□□□□ 0.84
COL9A1-204ENST00000370496 GJD4Q96KN9 370 aaPredicted RBP20.3■□□□□ 0.84
COL9A1-204ENST00000370496 PEAK1Q9H792 1746 aa20.29■□□□□ 0.84
COL9A1-204ENST00000370496 BLMP54132 1417 aaPredicted RBP20.29■□□□□ 0.84
COL9A1-204ENST00000370496 MAP3K19Q56UN5 1328 aa20.29■□□□□ 0.84
COL9A1-204ENST00000370496 RRS1Q15050 365 aaKnown RBP20.28■□□□□ 0.84
COL9A1-204ENST00000370496 MAP2P11137 1827 aaKnown RBP20.28■□□□□ 0.84
COL9A1-204ENST00000370496 WNK3Q9BYP7 1800 aa20.28■□□□□ 0.84
COL9A1-204ENST00000370496 AMPHP49418 695 aa20.27■□□□□ 0.84
COL9A1-204ENST00000370496 CRB1P82279 1406 aa20.27■□□□□ 0.84
COL9A1-204ENST00000370496 SPATA31A5Q5VU36 1347 aa20.26■□□□□ 0.83
COL9A1-204ENST00000370496 SPATA31A7Q8IWB4 1347 aa20.26■□□□□ 0.83
COL9A1-204ENST00000370496 CSB-PGBD3P0DP91 1061 aa20.26■□□□□ 0.83
COL9A1-204ENST00000370496 FBLN1P23142 703 aa20.26■□□□□ 0.83
COL9A1-204ENST00000370496 AMER1Q5JTC6 1135 aaPredicted RBP20.26■□□□□ 0.83
COL9A1-204ENST00000370496 LARP1Q6PKG0 1096 aaKnown RBP20.26■□□□□ 0.83
COL9A1-204ENST00000370496 AXIN2Q9Y2T1 843 aa20.26■□□□□ 0.83
COL9A1-204ENST00000370496 TNNT2P45379 298 aaPredicted RBP20.25■□□□□ 0.83
COL9A1-204ENST00000370496 MORC1Q86VD1 984 aa20.25■□□□□ 0.83
COL9A1-204ENST00000370496 FLT4P35916 1363 aa20.25■□□□□ 0.83
COL9A1-204ENST00000370496 WDR17Q8IZU2 1322 aa20.25■□□□□ 0.83
COL9A1-204ENST00000370496 A0A0G2JS52 829 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 MYT1Q01538 1121 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 USP35Q9P2H5 1018 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 KIF24Q5T7B8 1368 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 ERBB3P21860 1342 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 SPATA31A1Q5TZJ5 1347 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 THSD7AQ9UPZ6 1657 aa20.24■□□□□ 0.83
COL9A1-204ENST00000370496 SMG6Q86US8 1419 aaKnown RBP20.24■□□□□ 0.83
COL9A1-204ENST00000370496 PER1O15534 1290 aaPredicted RBP20.23■□□□□ 0.83
COL9A1-204ENST00000370496 HOXC9P31274 260 aa20.23■□□□□ 0.83
COL9A1-204ENST00000370496 CC2D1BQ5T0F9 858 aaKnown RBP20.23■□□□□ 0.83
COL9A1-204ENST00000370496 TOM1L2Q6ZVM7 507 aa20.23■□□□□ 0.83
COL9A1-204ENST00000370496 IP6K1Q92551 441 aa20.23■□□□□ 0.83
COL9A1-204ENST00000370496 CNGB1Q14028 1251 aaPredicted RBP20.22■□□□□ 0.83
COL9A1-204ENST00000370496 NPC1L1Q9UHC9 1359 aa20.22■□□□□ 0.83
COL9A1-204ENST00000370496 BRWD3Q6RI45 1802 aa20.22■□□□□ 0.83
COL9A1-204ENST00000370496 PPM1GO15355 546 aaPredicted RBP20.21■□□□□ 0.83
COL9A1-204ENST00000370496 FAM98CQ17RN3 349 aaKnown RBP20.21■□□□□ 0.83
COL9A1-204ENST00000370496 ANKRD24Q8TF21 1146 aa20.21■□□□□ 0.83
COL9A1-204ENST00000370496 EMILIN1Q9Y6C2 1016 aa20.21■□□□□ 0.83
COL9A1-204ENST00000370496 LTV1Q96GA3 475 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-204ENST00000370496 RGPD2P0DJD1 1756 aa20.2■□□□□ 0.82
COL9A1-204ENST00000370496 PARP4Q9UKK3 1724 aaKnown RBP20.19■□□□□ 0.82
COL9A1-204ENST00000370496 TCP11L2Q8N4U5 519 aa20.19■□□□□ 0.82
COL9A1-204ENST00000370496 INSRP06213 1382 aa20.18■□□□□ 0.82
COL9A1-204ENST00000370496 LRRC37A3O60309 1634 aa20.18■□□□□ 0.82
COL9A1-204ENST00000370496 SEPT12Q8IYM1 358 aa20.17■□□□□ 0.82
COL9A1-204ENST00000370496 NLRP2Q9NX02 1062 aa20.17■□□□□ 0.82
COL9A1-204ENST00000370496 THRAP3Q9Y2W1 955 aaKnown RBP20.17■□□□□ 0.82
COL9A1-204ENST00000370496 DDX10Q13206 875 aaKnown RBP20.16■□□□□ 0.82
COL9A1-204ENST00000370496 CARD10Q9BWT7 1032 aa20.16■□□□□ 0.82
COL9A1-204ENST00000370496 POLKQ9UBT6 870 aa20.16■□□□□ 0.82
COL9A1-204ENST00000370496 HSP90AB2PQ58FF8 381 aa20.15■□□□□ 0.82
COL9A1-204ENST00000370496 BARGINQ6ZT62 677 aa20.15■□□□□ 0.82
COL9A1-204ENST00000370496 ZNF316A6NFI3 1004 aaPredicted RBP20.14■□□□□ 0.81
COL9A1-204ENST00000370496 ONECUT3O60422 494 aaPredicted RBP20.12■□□□□ 0.81
COL9A1-204ENST00000370496 DISP2A7MBM2 1401 aa20.11■□□□□ 0.81
COL9A1-204ENST00000370496 CDCA7Q9BWT1 371 aaPredicted RBP20.09■□□□□ 0.81
COL9A1-204ENST00000370496 KRT27Q7Z3Y8 459 aa20.08■□□□□ 0.81
COL9A1-204ENST00000370496 TNS2Q63HR2 1409 aa20.08■□□□□ 0.8
COL9A1-204ENST00000370496 USHBP1Q8N6Y0 703 aa20.07■□□□□ 0.8
COL9A1-204ENST00000370496 PARD3Q8TEW0 1356 aa20.06■□□□□ 0.8
COL9A1-204ENST00000370496 IL2RBP14784 551 aa20.06■□□□□ 0.8
COL9A1-204ENST00000370496 MTHFSP49914 203 aa20.06■□□□□ 0.8
COL9A1-204ENST00000370496 EIF4A2Q14240 407 aaKnown RBP20.06■□□□□ 0.8
COL9A1-204ENST00000370496 MEGF6O75095 1541 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 SOCS7O14512 581 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 PDE3BQ13370 1112 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 DDB1Q16531 1140 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 NBPF6Q5VWK0 638 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 NBPF4Q96M43 638 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 RGPD1P0DJD0 1748 aa20.05■□□□□ 0.8
COL9A1-204ENST00000370496 EP400Q96L91 3159 aa20.04■□□□□ 0.8
COL9A1-204ENST00000370496 NCAPD2Q15021 1401 aa20.03■□□□□ 0.8
COL9A1-204ENST00000370496 COL3A1P02461 1466 aaPredicted RBP20.02■□□□□ 0.8
COL9A1-204ENST00000370496 OVOS2A0A0G2JMS6 1433 aa20.02■□□□□ 0.8
COL9A1-204ENST00000370496 SHANK3Q9BYB0 1731 aa20.02■□□□□ 0.8
COL9A1-204ENST00000370496 PPP2R1AP30153 589 aa20.01■□□□□ 0.79
COL9A1-204ENST00000370496 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
COL9A1-204ENST00000370496 PKD1L3Q7Z443 1732 aa20.01■□□□□ 0.79
COL9A1-204ENST00000370496 CFAP53Q96M91 514 aa20■□□□□ 0.79
COL9A1-204ENST00000370496 EYA1Q99502 592 aa20■□□□□ 0.79
COL9A1-204ENST00000370496 IGSF1Q8N6C5 1336 aa20■□□□□ 0.79
COL9A1-204ENST00000370496 EXOC5O00471 708 aa19.99■□□□□ 0.79
COL9A1-204ENST00000370496 FAM182BQ5T319 152 aa19.99■□□□□ 0.79
COL9A1-204ENST00000370496 TATP17735 454 aaPredicted RBP19.98■□□□□ 0.79
COL9A1-204ENST00000370496 RALBP1Q15311 655 aa19.98■□□□□ 0.79
COL9A1-204ENST00000370496 DIAPH1O60610 1272 aaKnown RBP19.97■□□□□ 0.79
COL9A1-204ENST00000370496 TNS1Q9HBL0 1735 aaKnown RBP19.97■□□□□ 0.79
COL9A1-204ENST00000370496 MSH5O43196 834 aa19.96■□□□□ 0.79
COL9A1-204ENST00000370496 IL13P35225 146 aa19.95■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms