RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 TMC1Q8TDI8 760 aa19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 ABCC6O95255 1503 aa19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 WDR17Q8IZU2 1322 aa19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 RGPD5Q99666 1765 aa19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 HDGFL2Q7Z4V5 671 aaPredicted RBP19.3■□□□□ 0.68
TNFRSF1A-202ENST00000366159 NME9Q86XW9 330 aa19.3■□□□□ 0.68
TNFRSF1A-202ENST00000366159 NINLQ9Y2I6 1382 aa19.3■□□□□ 0.68
TNFRSF1A-202ENST00000366159 ZBTB7CA1YPR0 619 aa19.29■□□□□ 0.68
TNFRSF1A-202ENST00000366159 BAG6P46379 1132 aa19.29■□□□□ 0.68
TNFRSF1A-202ENST00000366159 TERF2IPQ9NYB0 399 aa19.29■□□□□ 0.68
TNFRSF1A-202ENST00000366159 PDE3BQ13370 1112 aa19.27■□□□□ 0.68
TNFRSF1A-202ENST00000366159 USP47Q96K76 1375 aa19.27■□□□□ 0.68
TNFRSF1A-202ENST00000366159 SOX12O15370 315 aa19.26■□□□□ 0.67
TNFRSF1A-202ENST00000366159 TOM1L2Q6ZVM7 507 aa19.26■□□□□ 0.67
TNFRSF1A-202ENST00000366159 OVOS2A0A0J9YW53 1432 aa19.26■□□□□ 0.67
TNFRSF1A-202ENST00000366159 OVOS2Q6IE36 1432 aa19.26■□□□□ 0.67
TNFRSF1A-202ENST00000366159 TRIM37O94972 964 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 EN1Q05925 392 aaPredicted RBP19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 WNK3Q9BYP7 1800 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 PEAK1Q9H792 1746 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 LRRC37A3O60309 1634 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 CAMKK2Q96RR4 588 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 CARD10Q9BWT7 1032 aa19.25■□□□□ 0.67
TNFRSF1A-202ENST00000366159 PCGF6Q9BYE7 350 aa19.23■□□□□ 0.67
TNFRSF1A-202ENST00000366159 LTN1O94822 1766 aa19.22■□□□□ 0.67
TNFRSF1A-202ENST00000366159 ANKRD36BQ8N2N9 1353 aa19.22■□□□□ 0.67
TNFRSF1A-202ENST00000366159 TMF1P82094 1093 aa19.22■□□□□ 0.67
TNFRSF1A-202ENST00000366159 CDCA7Q9BWT1 371 aaPredicted RBP19.22■□□□□ 0.67
TNFRSF1A-202ENST00000366159 C11orf95C9JLR9 678 aaPredicted RBP19.21■□□□□ 0.67
TNFRSF1A-202ENST00000366159 EZH2Q15910 746 aaKnown RBP19.21■□□□□ 0.67
TNFRSF1A-202ENST00000366159 ERBB3P21860 1342 aa19.2■□□□□ 0.66
TNFRSF1A-202ENST00000366159 DDB1Q16531 1140 aa19.2■□□□□ 0.66
TNFRSF1A-202ENST00000366159 PARD3Q8TEW0 1356 aa19.19■□□□□ 0.66
TNFRSF1A-202ENST00000366159 CCDC7Q96M83 1385 aa19.19■□□□□ 0.66
TNFRSF1A-202ENST00000366159 OVOS2A0A0G2JMS6 1433 aa19.19■□□□□ 0.66
TNFRSF1A-202ENST00000366159 BCL9O00512 1426 aa19.19■□□□□ 0.66
TNFRSF1A-202ENST00000366159 APBA3O96018 575 aa19.19■□□□□ 0.66
TNFRSF1A-202ENST00000366159 CSB-PGBD3P0DP91 1061 aa19.18■□□□□ 0.66
TNFRSF1A-202ENST00000366159 MARCH10Q8NA82 808 aaPredicted RBP19.18■□□□□ 0.66
TNFRSF1A-202ENST00000366159 SBF2Q86WG5 1849 aa19.17■□□□□ 0.66
TNFRSF1A-202ENST00000366159 RREB1Q92766 1687 aa19.17■□□□□ 0.66
TNFRSF1A-202ENST00000366159 FYB1O15117 783 aa19.15■□□□□ 0.66
TNFRSF1A-202ENST00000366159 CDCA8Q53HL2 280 aa19.15■□□□□ 0.66
TNFRSF1A-202ENST00000366159 ANKRD24Q8TF21 1146 aa19.15■□□□□ 0.66
TNFRSF1A-202ENST00000366159 IP6K1Q92551 441 aa19.15■□□□□ 0.66
TNFRSF1A-202ENST00000366159 PSDA5PKW4 1024 aaPredicted RBP19.14■□□□□ 0.65
TNFRSF1A-202ENST00000366159 COG3Q96JB2 828 aa19.14■□□□□ 0.65
TNFRSF1A-202ENST00000366159 MYOM1P52179 1685 aa19.13■□□□□ 0.65
TNFRSF1A-202ENST00000366159 EXOC5O00471 708 aa19.13■□□□□ 0.65
TNFRSF1A-202ENST00000366159 NUP188Q5SRE5 1749 aa19.13■□□□□ 0.65
TNFRSF1A-202ENST00000366159 LRP5O75197 1615 aa19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 MAP3K19Q56UN5 1328 aa19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 FBLN1P23142 703 aa19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 PTF1AQ7RTS3 328 aa19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 RGPD3A6NKT7 1758 aaPredicted RBP19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 RGPD4Q7Z3J3 1758 aa19.12■□□□□ 0.65
TNFRSF1A-202ENST00000366159 TNS2Q63HR2 1409 aa19.11■□□□□ 0.65
TNFRSF1A-202ENST00000366159 PLSCR1O15162 318 aa19.11■□□□□ 0.65
TNFRSF1A-202ENST00000366159 CARD14Q9BXL6 1004 aa19.11■□□□□ 0.65
TNFRSF1A-202ENST00000366159 BCL11BQ9C0K0 894 aaPredicted RBP19.11■□□□□ 0.65
TNFRSF1A-202ENST00000366159 NLRP2Q9NX02 1062 aa19.11■□□□□ 0.65
TNFRSF1A-202ENST00000366159 R3HDM1Q15032 1099 aaKnown RBP19.1■□□□□ 0.65
TNFRSF1A-202ENST00000366159 HOXC9P31274 260 aa19.09■□□□□ 0.65
TNFRSF1A-202ENST00000366159 FAM208AQ9UK61 1670 aaKnown RBP19.09■□□□□ 0.65
TNFRSF1A-202ENST00000366159 IL2RBP14784 551 aa19.08■□□□□ 0.65
TNFRSF1A-202ENST00000366159 GGNBP2Q9H3C7 697 aa19.08■□□□□ 0.65
TNFRSF1A-202ENST00000366159 RTL1A6NKG5 1358 aa19.06■□□□□ 0.64
TNFRSF1A-202ENST00000366159 KIF20BQ96Q89 1820 aa19.06■□□□□ 0.64
TNFRSF1A-202ENST00000366159 PROM2Q8N271 834 aa19.05■□□□□ 0.64
TNFRSF1A-202ENST00000366159 CCER1Q8TC90 406 aaPredicted RBP19.05■□□□□ 0.64
TNFRSF1A-202ENST00000366159 RRS1Q15050 365 aaKnown RBP19.04■□□□□ 0.64
TNFRSF1A-202ENST00000366159 AMPHP49418 695 aa19.03■□□□□ 0.64
TNFRSF1A-202ENST00000366159 NHSQ6T4R5 1651 aa19.03■□□□□ 0.64
TNFRSF1A-202ENST00000366159 NSD3Q9BZ95 1437 aa19.03■□□□□ 0.64
TNFRSF1A-202ENST00000366159 KCNQ2O43526 872 aa19.02■□□□□ 0.64
TNFRSF1A-202ENST00000366159 NBPF14Q5TI25 921 aa19.02■□□□□ 0.64
TNFRSF1A-202ENST00000366159 LTV1Q96GA3 475 aaPredicted RBP19.02■□□□□ 0.64
TNFRSF1A-202ENST00000366159 RGPD2P0DJD1 1756 aa19.02■□□□□ 0.64
TNFRSF1A-202ENST00000366159 KIF24Q5T7B8 1368 aa19.01■□□□□ 0.63
TNFRSF1A-202ENST00000366159 HSPA5P11021 654 aaKnown RBP19■□□□□ 0.63
TNFRSF1A-202ENST00000366159 EIF4G2P78344 907 aaKnown RBP eCLIP19■□□□□ 0.63
TNFRSF1A-202ENST00000366159 NBPF6Q5VWK0 638 aa19■□□□□ 0.63
TNFRSF1A-202ENST00000366159 NBPF4Q96M43 638 aa19■□□□□ 0.63
TNFRSF1A-202ENST00000366159 INSRP06213 1382 aa18.99■□□□□ 0.63
TNFRSF1A-202ENST00000366159 HSP90AB2PQ58FF8 381 aa18.98■□□□□ 0.63
TNFRSF1A-202ENST00000366159 SHANK3Q9BYB0 1731 aa18.98■□□□□ 0.63
TNFRSF1A-202ENST00000366159 ANO8Q9HCE9 1232 aaPredicted RBP18.98■□□□□ 0.63
TNFRSF1A-202ENST00000366159 MEGF6O75095 1541 aa18.97■□□□□ 0.63
TNFRSF1A-202ENST00000366159 FLT4P35916 1363 aa18.97■□□□□ 0.63
TNFRSF1A-202ENST00000366159 TXNRD1Q16881 649 aa18.97■□□□□ 0.63
TNFRSF1A-202ENST00000366159 ACSBG1Q96GR2 724 aa18.97■□□□□ 0.63
TNFRSF1A-202ENST00000366159 ANKRD26Q9UPS8 1709 aa18.96■□□□□ 0.63
TNFRSF1A-202ENST00000366159 EMILIN1Q9Y6C2 1016 aa18.95■□□□□ 0.62
TNFRSF1A-202ENST00000366159 CGNL1Q0VF96 1302 aa18.95■□□□□ 0.62
TNFRSF1A-202ENST00000366159 BTAF1O14981 1849 aa18.94■□□□□ 0.62
TNFRSF1A-202ENST00000366159 DDX54Q8TDD1 881 aaKnown RBP18.94■□□□□ 0.62
TNFRSF1A-202ENST00000366159 CASZ1Q86V15 1759 aa18.93■□□□□ 0.62
TNFRSF1A-202ENST00000366159 ZCRB1Q8TBF4 217 aaKnown RBP18.93■□□□□ 0.62
TNFRSF1A-202ENST00000366159 NCAPD2Q15021 1401 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms