RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 KIAA1328Q86T90 577 aa18.94■□□□□ 0.62
COL18A1-203ENST00000359759 LUC7LQ9NQ29 371 aaKnown RBP18.94■□□□□ 0.62
COL18A1-203ENST00000359759 JMYQ8N9B5 988 aa18.94■□□□□ 0.62
COL18A1-203ENST00000359759 SPATA32Q96LK8 384 aa18.94■□□□□ 0.62
COL18A1-203ENST00000359759 SSR1P43307 286 aaKnown RBP18.93■□□□□ 0.62
COL18A1-203ENST00000359759 WDR33Q9C0J8 1336 aaKnown RBP18.93■□□□□ 0.62
COL18A1-203ENST00000359759 MATR3P43243 847 aaKnown RBP eCLIP18.93■□□□□ 0.621e-7■■■■□ 24.2
COL18A1-203ENST00000359759 KRT85P78386 507 aa18.93■□□□□ 0.62
COL18A1-203ENST00000359759 TCP11L2Q8N4U5 519 aa18.93■□□□□ 0.62
COL18A1-203ENST00000359759 TMX1Q9H3N1 280 aa18.93■□□□□ 0.62
COL18A1-203ENST00000359759 DYDC1Q8WWB3 177 aa18.92■□□□□ 0.62
COL18A1-203ENST00000359759 SPINK5Q9NQ38 1064 aaPredicted RBP18.92■□□□□ 0.62
COL18A1-203ENST00000359759 TWISTNBQ3B726 338 aaPredicted RBP18.92■□□□□ 0.62
COL18A1-203ENST00000359759 EZRP15311 586 aaKnown RBP18.92■□□□□ 0.62
COL18A1-203ENST00000359759 TMEM132EQ6IEE7 984 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 AKNAQ7Z591 1439 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 AAMPQ13685 434 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 TICAM2Q86XR7 235 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 CCDC113Q9H0I3 377 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 RAPGEF2Q9Y4G8 1499 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 GOLGA6L10A0A0M3HER8 536 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 TRIM22Q8IYM9 498 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 PDCL2Q8N4E4 241 aa18.91■□□□□ 0.62
COL18A1-203ENST00000359759 INCENPQ9NQS7 918 aa18.9■□□□□ 0.62
COL18A1-203ENST00000359759 GCC1Q96CN9 775 aa18.9■□□□□ 0.62
COL18A1-203ENST00000359759 NUP62CLQ9H1M0 184 aa18.9■□□□□ 0.62
COL18A1-203ENST00000359759 ERC1Q8IUD2 1116 aa18.9■□□□□ 0.62
COL18A1-203ENST00000359759 PRKAR2BP31323 418 aa18.89■□□□□ 0.62
COL18A1-203ENST00000359759 UPF3BQ9BZI7 483 aaKnown RBP18.89■□□□□ 0.62
COL18A1-203ENST00000359759 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.89■□□□□ 0.621e-7■■■■□ 26
COL18A1-203ENST00000359759 TRERF1Q96PN7 1200 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 PDRG1Q9NUG6 133 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 SLC4A2P04920 1241 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 IQCEQ6IPM2 695 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 GIMAP7Q8NHV1 300 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 SYCE3A1L190 88 aa18.89■□□□□ 0.61
COL18A1-203ENST00000359759 FKBP4Q02790 459 aaKnown RBP eCLIP18.88■□□□□ 0.613e-6■■■■■ 29.7
COL18A1-203ENST00000359759 ANKRD1Q15327 319 aa18.88■□□□□ 0.61
COL18A1-203ENST00000359759 EPB41L2O43491 1005 aaKnown RBP18.88■□□□□ 0.61
COL18A1-203ENST00000359759 CWC27Q6UX04 472 aaKnown RBP18.88■□□□□ 0.61
COL18A1-203ENST00000359759 CCDC97Q96F63 343 aaPredicted RBP18.88■□□□□ 0.61
COL18A1-203ENST00000359759 JAKMIP1Q96N16 626 aaKnown RBP18.88■□□□□ 0.61
COL18A1-203ENST00000359759 NLRP6P59044 892 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 SOGA3Q5TF21 947 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 USP8P40818 1118 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 EIF5P55010 431 aaKnown RBP18.87■□□□□ 0.61
COL18A1-203ENST00000359759 MAP2K1Q02750 393 aaPredicted RBP18.87■□□□□ 0.61
COL18A1-203ENST00000359759 MYL6BP14649 208 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 TXLNBQ8N3L3 684 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 NEBLO76041 1014 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 MIA2Q96PC5 1412 aa18.87■□□□□ 0.61
COL18A1-203ENST00000359759 JPH4Q96JJ6 628 aa18.86■□□□□ 0.61
COL18A1-203ENST00000359759 DDX11Q96FC9 970 aa18.86■□□□□ 0.61
COL18A1-203ENST00000359759 TAF4BQ92750 862 aa18.86■□□□□ 0.61
COL18A1-203ENST00000359759 CEP57L1Q8IYX8 460 aa18.86■□□□□ 0.61
COL18A1-203ENST00000359759 CCDC148Q8NFR7 591 aa18.86■□□□□ 0.61
COL18A1-203ENST00000359759 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.86■□□□□ 0.616e-7■■■■□ 20.8
COL18A1-203ENST00000359759 NOL7Q9UMY1 257 aaKnown RBP18.86■□□□□ 0.61
COL18A1-203ENST00000359759 TMCO3Q6UWJ1 677 aa18.85■□□□□ 0.61
COL18A1-203ENST00000359759 CFAP45Q9UL16 551 aa18.85■□□□□ 0.61
COL18A1-203ENST00000359759 ATF3P18847 181 aa18.85■□□□□ 0.61
COL18A1-203ENST00000359759 ESPNB1AK53 854 aa18.85■□□□□ 0.61
COL18A1-203ENST00000359759 RBM5P52756 815 aaKnown RBP eCLIP18.85■□□□□ 0.614e-7■■□□□ 12.3
COL18A1-203ENST00000359759 CFAP100Q494V2 611 aa18.85■□□□□ 0.61
COL18A1-203ENST00000359759 PPP1R1BQ9UD71 204 aaPredicted RBP18.85■□□□□ 0.61
COL18A1-203ENST00000359759 CASQ1P31415 396 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 JAKMIP3Q5VZ66 844 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 AACSQ86V21 672 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 GOPCQ9HD26 462 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 BCCIPQ9P287 314 aaKnown RBP eCLIP18.84■□□□□ 0.61
COL18A1-203ENST00000359759 ARHGAP29Q52LW3 1261 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 UBXN4Q92575 508 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 DNA2P51530 1060 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 POLR3GO15318 223 aaPredicted RBP18.84■□□□□ 0.61
COL18A1-203ENST00000359759 PPP2R1AP30153 589 aa18.84■□□□□ 0.61
COL18A1-203ENST00000359759 RRP9O43818 475 aaKnown RBP18.84■□□□□ 0.61
COL18A1-203ENST00000359759 GNL3LQ9NVN8 582 aaKnown RBP18.84■□□□□ 0.61
COL18A1-203ENST00000359759 DHX8Q14562 1220 aaKnown RBP18.83■□□□□ 0.61
COL18A1-203ENST00000359759 BRD4O60885 1362 aaPredicted RBP18.83■□□□□ 0.61
COL18A1-203ENST00000359759 RBM25P49756 843 aaKnown RBP18.83■□□□□ 0.6
COL18A1-203ENST00000359759 ABTB2Q8N961 1025 aa18.83■□□□□ 0.6
COL18A1-203ENST00000359759 BACH2Q9BYV9 841 aa18.83■□□□□ 0.6
COL18A1-203ENST00000359759 NACAP1Q9BZK3 213 aa18.83■□□□□ 0.6
COL18A1-203ENST00000359759 BLOC1S2Q6QNY1 142 aa18.83■□□□□ 0.6
COL18A1-203ENST00000359759 CHD1LQ86WJ1 897 aa18.83■□□□□ 0.6
COL18A1-203ENST00000359759 SHTN1A0MZ66 631 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 CRACR2AQ9BSW2 395 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 SMTNL1A8MU46 457 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 USP5P45974 858 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 CCDC57Q2TAC2 916 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 GAS2L2Q8NHY3 880 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 STRN4Q9NRL3 753 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 NF2P35240 595 aa18.82■□□□□ 0.6
COL18A1-203ENST00000359759 WASHC2AQ641Q2 1341 aa18.81■□□□□ 0.6
COL18A1-203ENST00000359759 SLC26A8Q96RN1 970 aa18.81■□□□□ 0.6
COL18A1-203ENST00000359759 MCM4P33991 863 aa18.81■□□□□ 0.6
COL18A1-203ENST00000359759 RNF187Q5TA31 235 aaPredicted RBP18.81■□□□□ 0.6
COL18A1-203ENST00000359759 DCAF8L1A6NGE4 600 aa18.81■□□□□ 0.6
COL18A1-203ENST00000359759 CASTP20810 708 aaKnown RBP18.81■□□□□ 0.6
COL18A1-203ENST00000359759 ZNF76P36508 570 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms