RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 BARGINQ6ZT62 677 aa25.78■■□□□ 1.72
CLN3-202ENST00000355477 BLMP54132 1417 aaPredicted RBP25.78■■□□□ 1.72
CLN3-202ENST00000355477 TCP11L2Q8N4U5 519 aa25.77■■□□□ 1.72
CLN3-202ENST00000355477 LTN1O94822 1766 aa25.76■■□□□ 1.71
CLN3-202ENST00000355477 CRB1P82279 1406 aa25.75■■□□□ 1.71
CLN3-202ENST00000355477 THRAP3Q9Y2W1 955 aaKnown RBP25.73■■□□□ 1.71
CLN3-202ENST00000355477 ANKRD36BQ8N2N9 1353 aa25.71■■□□□ 1.71
CLN3-202ENST00000355477 DEFB132Q7Z7B7 95 aa25.71■■□□□ 1.71
CLN3-202ENST00000355477 PARP4Q9UKK3 1724 aaKnown RBP25.71■■□□□ 1.71
CLN3-202ENST00000355477 OVOS2A0A0J9YW53 1432 aa25.71■■□□□ 1.71
CLN3-202ENST00000355477 OVOS2Q6IE36 1432 aa25.71■■□□□ 1.71
CLN3-202ENST00000355477 WDR17Q8IZU2 1322 aa25.7■■□□□ 1.71
CLN3-202ENST00000355477 TOM1L2Q6ZVM7 507 aa25.7■■□□□ 1.7
CLN3-202ENST00000355477 MYOM1P52179 1685 aa25.7■■□□□ 1.7
CLN3-202ENST00000355477 CDCA8Q53HL2 280 aa25.69■■□□□ 1.7
CLN3-202ENST00000355477 WNK3Q9BYP7 1800 aa25.69■■□□□ 1.7
CLN3-202ENST00000355477 SF3B2Q13435 895 aaKnown RBP25.68■■□□□ 1.7
CLN3-202ENST00000355477 RGPD1P0DJD0 1748 aa25.68■■□□□ 1.7
CLN3-202ENST00000355477 ABCC6O95255 1503 aa25.68■■□□□ 1.7
CLN3-202ENST00000355477 PDE3BQ13370 1112 aa25.66■■□□□ 1.7
CLN3-202ENST00000355477 TNS1Q9HBL0 1735 aaKnown RBP25.65■■□□□ 1.7
CLN3-202ENST00000355477 CSB-PGBD3P0DP91 1061 aa25.64■■□□□ 1.7
CLN3-202ENST00000355477 FAM196AQ6ZSG2 479 aa25.63■■□□□ 1.69
CLN3-202ENST00000355477 CARD10Q9BWT7 1032 aa25.63■■□□□ 1.69
CLN3-202ENST00000355477 LRRC37A3O60309 1634 aa25.63■■□□□ 1.69
CLN3-202ENST00000355477 FYB1O15117 783 aa25.62■■□□□ 1.69
CLN3-202ENST00000355477 FBLN1P23142 703 aa25.62■■□□□ 1.69
CLN3-202ENST00000355477 COG3Q96JB2 828 aa25.62■■□□□ 1.69
CLN3-202ENST00000355477 KIF20BQ96Q89 1820 aa25.61■■□□□ 1.69
CLN3-202ENST00000355477 HSPA5P11021 654 aaKnown RBP25.61■■□□□ 1.69
CLN3-202ENST00000355477 CARD14Q9BXL6 1004 aa25.61■■□□□ 1.69
CLN3-202ENST00000355477 EIF4G2P78344 907 aaKnown RBP eCLIP25.6■■□□□ 1.691e-9■■■■□ 22.4
CLN3-202ENST00000355477 TRIM37O94972 964 aa25.59■■□□□ 1.69
CLN3-202ENST00000355477 GGNBP2Q9H3C7 697 aa25.59■■□□□ 1.69
CLN3-202ENST00000355477 ERBB3P21860 1342 aa25.59■■□□□ 1.69
CLN3-202ENST00000355477 PEAK1Q9H792 1746 aa25.58■■□□□ 1.69
CLN3-202ENST00000355477 BAG6P46379 1132 aa25.58■■□□□ 1.69
CLN3-202ENST00000355477 EN1Q05925 392 aaPredicted RBP25.57■■□□□ 1.68
CLN3-202ENST00000355477 DDB1Q16531 1140 aa25.57■■□□□ 1.68
CLN3-202ENST00000355477 ANKRD24Q8TF21 1146 aa25.57■■□□□ 1.68
CLN3-202ENST00000355477 SBF2Q86WG5 1849 aa25.56■■□□□ 1.68
CLN3-202ENST00000355477 DISP2A7MBM2 1401 aa25.56■■□□□ 1.68
CLN3-202ENST00000355477 IP6K1Q92551 441 aa25.56■■□□□ 1.68
CLN3-202ENST00000355477 MAP3K19Q56UN5 1328 aa25.55■■□□□ 1.68
CLN3-202ENST00000355477 CCDC7Q96M83 1385 aa25.55■■□□□ 1.68
CLN3-202ENST00000355477 POLR3GLQ9BT43 218 aa25.54■■□□□ 1.68
CLN3-202ENST00000355477 CDCA7Q9BWT1 371 aaPredicted RBP25.54■■□□□ 1.68
CLN3-202ENST00000355477 NLRP2Q9NX02 1062 aa25.54■■□□□ 1.68
CLN3-202ENST00000355477 SRCAPQ6ZRS2 3230 aa25.54■■□□□ 1.68
CLN3-202ENST00000355477 RGPD2P0DJD1 1756 aa25.53■■□□□ 1.68
CLN3-202ENST00000355477 NSD3Q9BZ95 1437 aa25.53■■□□□ 1.68
CLN3-202ENST00000355477 MARCH10Q8NA82 808 aaPredicted RBP25.52■■□□□ 1.68
CLN3-202ENST00000355477 RRS1Q15050 365 aaKnown RBP25.51■■□□□ 1.67
CLN3-202ENST00000355477 OVOS2A0A0G2JMS6 1433 aa25.5■■□□□ 1.67
CLN3-202ENST00000355477 APBA3O96018 575 aa25.5■■□□□ 1.67
CLN3-202ENST00000355477 HOXC9P31274 260 aa25.5■■□□□ 1.67
CLN3-202ENST00000355477 LTV1Q96GA3 475 aaPredicted RBP25.5■■□□□ 1.67
CLN3-202ENST00000355477 FAM208AQ9UK61 1670 aaKnown RBP25.49■■□□□ 1.67
CLN3-202ENST00000355477 AMPHP49418 695 aa25.49■■□□□ 1.67
CLN3-202ENST00000355477 EZH2Q15910 746 aaKnown RBP25.49■■□□□ 1.67
CLN3-202ENST00000355477 C11orf95C9JLR9 678 aaPredicted RBP25.48■■□□□ 1.67
CLN3-202ENST00000355477 EXOC5O00471 708 aa25.48■■□□□ 1.67
CLN3-202ENST00000355477 CAMKK2Q96RR4 588 aa25.48■■□□□ 1.67
CLN3-202ENST00000355477 MAP2P11137 1827 aaKnown RBP25.44■■□□□ 1.66
CLN3-202ENST00000355477 IL2RBP14784 551 aa25.44■■□□□ 1.66
CLN3-202ENST00000355477 PTF1AQ7RTS3 328 aa25.44■■□□□ 1.66
CLN3-202ENST00000355477 KAT6BQ8WYB5 2073 aa25.43■■□□□ 1.66
CLN3-202ENST00000355477 TNS2Q63HR2 1409 aa25.43■■□□□ 1.66
CLN3-202ENST00000355477 RTL1A6NKG5 1358 aa25.43■■□□□ 1.66
CLN3-202ENST00000355477 RREB1Q92766 1687 aa25.42■■□□□ 1.66
CLN3-202ENST00000355477 CGNL1Q0VF96 1302 aa25.41■■□□□ 1.66
CLN3-202ENST00000355477 BCL9O00512 1426 aa25.41■■□□□ 1.66
CLN3-202ENST00000355477 PANK3Q9H999 370 aa25.4■■□□□ 1.66
CLN3-202ENST00000355477 ANKRD26Q9UPS8 1709 aa25.4■■□□□ 1.66
CLN3-202ENST00000355477 PSDA5PKW4 1024 aaPredicted RBP25.39■■□□□ 1.66
CLN3-202ENST00000355477 HSP90AB2PQ58FF8 381 aa25.39■■□□□ 1.66
CLN3-202ENST00000355477 BCL11BQ9C0K0 894 aaPredicted RBP25.39■■□□□ 1.66
CLN3-202ENST00000355477 NUP188Q5SRE5 1749 aa25.39■■□□□ 1.65
CLN3-202ENST00000355477 EMILIN1Q9Y6C2 1016 aa25.38■■□□□ 1.65
CLN3-202ENST00000355477 PARD3Q8TEW0 1356 aa25.38■■□□□ 1.65
CLN3-202ENST00000355477 NBPF6Q5VWK0 638 aa25.37■■□□□ 1.65
CLN3-202ENST00000355477 NBPF4Q96M43 638 aa25.37■■□□□ 1.65
CLN3-202ENST00000355477 INSRP06213 1382 aa25.36■■□□□ 1.65
CLN3-202ENST00000355477 FLT4P35916 1363 aa25.35■■□□□ 1.65
CLN3-202ENST00000355477 RGPD3A6NKT7 1758 aaPredicted RBP25.35■■□□□ 1.65
CLN3-202ENST00000355477 RGPD4Q7Z3J3 1758 aa25.35■■□□□ 1.65
CLN3-202ENST00000355477 KIF24Q5T7B8 1368 aa25.34■■□□□ 1.65
CLN3-202ENST00000355477 KCNQ2O43526 872 aa25.34■■□□□ 1.65
CLN3-202ENST00000355477 R3HDM1Q15032 1099 aaKnown RBP25.33■■□□□ 1.65
CLN3-202ENST00000355477 USHBP1Q8N6Y0 703 aa25.33■■□□□ 1.65
CLN3-202ENST00000355477 SHANK3Q9BYB0 1731 aa25.33■■□□□ 1.65
CLN3-202ENST00000355477 NHSQ6T4R5 1651 aa25.32■■□□□ 1.64
CLN3-202ENST00000355477 PLSCR1O15162 318 aa25.32■■□□□ 1.64
CLN3-202ENST00000355477 KIF7Q2M1P5 1343 aa25.32■■□□□ 1.64
CLN3-202ENST00000355477 MEGF6O75095 1541 aa25.32■■□□□ 1.64
CLN3-202ENST00000355477 SMG6Q86US8 1419 aaKnown RBP25.31■■□□□ 1.64
CLN3-202ENST00000355477 PPM1GO15355 546 aaPredicted RBP25.31■■□□□ 1.64
CLN3-202ENST00000355477 DDX54Q8TDD1 881 aaKnown RBP25.31■■□□□ 1.64
CLN3-202ENST00000355477 ACSBG1Q96GR2 724 aa25.31■■□□□ 1.64
CLN3-202ENST00000355477 TNNT2P45379 298 aaPredicted RBP25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms