RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 SMC5Q8IY18 1101 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 TMEM106CQ9BVX2 250 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 C22orf23Q9BZE7 217 aa10.13□□□□□ -0.79
ATG4A-201ENST00000343524 NAP1L2Q9ULW6 460 aaPredicted RBP10.13□□□□□ -0.79
ATG4A-201ENST00000343524 MED14O60244 1454 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 ST20-MTHFSA0A0A6YYL1 179 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 E9PSI1 815 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 GTF2E1P29083 439 aaPredicted RBP10.12□□□□□ -0.79
ATG4A-201ENST00000343524 DDIT3P35638 169 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 HMGN5P82970 282 aaKnown RBP10.12□□□□□ -0.79
ATG4A-201ENST00000343524 TRMT2AQ8IZ69 625 aaKnown RBP10.12□□□□□ -0.79
ATG4A-201ENST00000343524 CCDC39Q9UFE4 941 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 ZKSCAN5Q9Y2L8 839 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 STRCP1A6NGW2 1772 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 SRCAPQ6ZRS2 3230 aa10.12□□□□□ -0.79
ATG4A-201ENST00000343524 MYO5CQ9NQX4 1742 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 PER1O15534 1290 aaPredicted RBP10.11□□□□□ -0.79
ATG4A-201ENST00000343524 IGHDP01880 384 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 ZSCAN20P17040 1043 aaPredicted RBP10.11□□□□□ -0.79
ATG4A-201ENST00000343524 RAB3GAP1Q15042 981 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 KLHL40Q2TBA0 621 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 STAC3Q96MF2 364 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 PIK3C2GO75747 1445 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 CLTCQ00610 1675 aaKnown RBP10.11□□□□□ -0.79
ATG4A-201ENST00000343524 ZNF445P59923 1031 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 DCAF8Q5TAQ9 597 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 GAS2L3Q86XJ1 694 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 ANKLE2Q86XL3 938 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 PRIMPOLQ96LW4 560 aa10.11□□□□□ -0.79
ATG4A-201ENST00000343524 BCL11BQ9C0K0 894 aaPredicted RBP10.11□□□□□ -0.79
ATG4A-201ENST00000343524 NPHP4O75161 1426 aaPredicted RBP10.1□□□□□ -0.79
ATG4A-201ENST00000343524 TNPO1Q92973 898 aaKnown RBP10.1□□□□□ -0.79
ATG4A-201ENST00000343524 PDLIM2Q96JY6 352 aa10.1□□□□□ -0.79
ATG4A-201ENST00000343524 PRDM15P57071 1507 aaPredicted RBP10.1□□□□□ -0.79
ATG4A-201ENST00000343524 FAM135AQ9P2D6 1515 aa10.1□□□□□ -0.79
ATG4A-201ENST00000343524 CDK12Q9NYV4 1490 aaPredicted RBP10.1□□□□□ -0.79
ATG4A-201ENST00000343524 PYGBP11216 843 aa10.09□□□□□ -0.79
ATG4A-201ENST00000343524 CLEC17AQ6ZS10 378 aa10.09□□□□□ -0.79
ATG4A-201ENST00000343524 RWDD1Q9H446 243 aaPredicted RBP10.09□□□□□ -0.79
ATG4A-201ENST00000343524 DEPDC5O75140 1603 aa10.09□□□□□ -0.79
ATG4A-201ENST00000343524 ZNF772Q68DY9 489 aaPredicted RBP10.09□□□□□ -0.79
ATG4A-201ENST00000343524 GPRASP1Q5JY77 1395 aa10.08□□□□□ -0.8
ATG4A-201ENST00000343524 HSP90AB1P08238 724 aaKnown RBP10.08□□□□□ -0.8
ATG4A-201ENST00000343524 CDK11BP21127 795 aaKnown RBP10.08□□□□□ -0.8
ATG4A-201ENST00000343524 IFFO2Q5TF58 517 aa10.08□□□□□ -0.8
ATG4A-201ENST00000343524 MYRIPQ8NFW9 859 aa10.08□□□□□ -0.8
ATG4A-201ENST00000343524 FAM163AQ96GL9 167 aaPredicted RBP10.08□□□□□ -0.8
ATG4A-201ENST00000343524 KIDINS220Q9ULH0 1771 aa10.08□□□□□ -0.8
ATG4A-201ENST00000343524 VGFO15240 615 aaPredicted RBP10.07□□□□□ -0.8
ATG4A-201ENST00000343524 SPRYD3Q8NCJ5 442 aa10.07□□□□□ -0.8
ATG4A-201ENST00000343524 PRDM10Q9NQV6 1147 aa10.07□□□□□ -0.8
ATG4A-201ENST00000343524 ADAMTS8Q9UP79 889 aa10.07□□□□□ -0.8
ATG4A-201ENST00000343524 CDK13Q14004 1512 aaKnown RBP10.07□□□□□ -0.8
ATG4A-201ENST00000343524 GTF2F1P35269 517 aaKnown RBP eCLIP10.07□□□□□ -0.8
ATG4A-201ENST00000343524 VASPP50552 380 aaPredicted RBP10.07□□□□□ -0.8
ATG4A-201ENST00000343524 SETBP1Q9Y6X0 1596 aa10.06□□□□□ -0.8
ATG4A-201ENST00000343524 RXRBP28702 533 aa10.06□□□□□ -0.8
ATG4A-201ENST00000343524 IRX5P78411 483 aaPredicted RBP10.06□□□□□ -0.8
ATG4A-201ENST00000343524 KIAA2012Q0VF49 1180 aa10.06□□□□□ -0.8
ATG4A-201ENST00000343524 IQGAP1P46940 1657 aa10.06□□□□□ -0.8
ATG4A-201ENST00000343524 ARHGAP5Q13017 1502 aa10.06□□□□□ -0.8
ATG4A-201ENST00000343524 PDZRN3Q9UPQ7 1066 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 DDX49Q9Y6V7 483 aaKnown RBP10.05□□□□□ -0.8
ATG4A-201ENST00000343524 PRAG1Q86YV5 1406 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 ERBINQ96RT1 1412 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 JCADQ9P266 1359 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 TULP1O00294 542 aaPredicted RBP10.05□□□□□ -0.8
ATG4A-201ENST00000343524 XPCQ01831 940 aaPredicted RBP10.05□□□□□ -0.8
ATG4A-201ENST00000343524 CC2D1BQ5T0F9 858 aaKnown RBP10.05□□□□□ -0.8
ATG4A-201ENST00000343524 PCDH10Q9P2E7 1040 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 ABCC1P33527 1531 aa10.05□□□□□ -0.8
ATG4A-201ENST00000343524 NPC1L1Q9UHC9 1359 aa10.04□□□□□ -0.8
ATG4A-201ENST00000343524 MFAP1P55081 439 aaKnown RBP10.04□□□□□ -0.8
ATG4A-201ENST00000343524 TMF1P82094 1093 aa10.04□□□□□ -0.8
ATG4A-201ENST00000343524 RBM33Q96EV2 1170 aaKnown RBP10.04□□□□□ -0.8
ATG4A-201ENST00000343524 PCDHB8Q9UN66 801 aa10.04□□□□□ -0.8
ATG4A-201ENST00000343524 NBPF1Q3BBV0 1214 aa10.03□□□□□ -0.8
ATG4A-201ENST00000343524 THEMISQ8N1K5 641 aaPredicted RBP10.03□□□□□ -0.8
ATG4A-201ENST00000343524 XIRP1Q702N8 1843 aaKnown RBP10.03□□□□□ -0.8
ATG4A-201ENST00000343524 KIF16BQ96L93 1317 aa10.03□□□□□ -0.8
ATG4A-201ENST00000343524 ROBO1Q9Y6N7 1651 aa10.03□□□□□ -0.8
ATG4A-201ENST00000343524 SLC20A2Q08357 652 aa10.03□□□□□ -0.8
ATG4A-201ENST00000343524 TNRQ92752 1358 aa10.02□□□□□ -0.8
ATG4A-201ENST00000343524 ASXL1Q8IXJ9 1541 aa10.02□□□□□ -0.8
ATG4A-201ENST00000343524 BCAR3O75815 825 aa10.02□□□□□ -0.81
ATG4A-201ENST00000343524 PLCG2P16885 1265 aa10.02□□□□□ -0.81
ATG4A-201ENST00000343524 TMEM51Q9NW97 253 aa10.02□□□□□ -0.81
ATG4A-201ENST00000343524 COG6Q9Y2V7 657 aa10.02□□□□□ -0.81
ATG4A-201ENST00000343524 CCDC66A2RUB6 948 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 PPP2R1AP30153 589 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 NUCB2P80303 420 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 RSPH4AQ5TD94 716 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 FEZ1Q99689 392 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.01□□□□□ -0.81
ATG4A-201ENST00000343524 ANKRD50Q9ULJ7 1429 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 LRP6O75581 1613 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 K7ELQ4 463 aaPredicted RBP10.01□□□□□ -0.81
ATG4A-201ENST00000343524 GABPB1Q06547 395 aaPredicted RBP10.01□□□□□ -0.81
ATG4A-201ENST00000343524 CFAP44Q96MT7 982 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 CHMP4BQ9H444 224 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms